Guide to the Human Genome
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Name: GLI4 Sequence: fasta or formatted (376aa) NCBI GI: 20270245
Description:

GLI-Kruppel family member GLI4

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         31           3
 C cysteine            4.3         16           1
 D aspartate           2.1          8           1
 E glutamate           6.9         26           2
 F phenylalanine       4.0         15           2
 G glycine            11.2         42           2
 H histidine           6.9         26           2
 I isoleucine          2.7         10           1
 K lysine              4.5         17           1
 L leucine             5.9         22           3
 M methionine          0.3          1           1
 N asparagine          1.1          4           1
 P proline             8.2         31           2
 Q glutamine           6.9         26           2
 R arginine            8.0         30           2
 S serine              9.8         37           2
 T threonine           2.9         11           1
 V valine              3.2         12           1
 W tryptophan          1.1          4           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GLI-Kruppel family member GLI4 
ZNF135                0.344   zinc finger protein 135 
ZNF3                  0.342   zinc finger protein 3 isoform 2 
ZNF34                 0.337   zinc finger protein 34 
ZNF566                0.336   zinc finger protein 566 isoform 1 
ZNF566                0.336   zinc finger protein 566 isoform 1 
ZNF566                0.336   zinc finger protein 566 isoform 1 
ZNF566                0.336   zinc finger protein 566 isoform 2 
ZNF250                0.336   zinc finger protein 250 isoform b 
ZNF250                0.336   zinc finger protein 250 isoform a 
ZNF16                 0.336   zinc finger protein 16 
ZNF16                 0.336   zinc finger protein 16 
ZSCAN2                0.335   zinc finger protein 29 isoform 1 
LOC344065             0.335   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.335   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.335   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF180                0.335   zinc finger protein 180 
ZNF192                0.333   zinc finger protein 192 
ZNF79                 0.332   zinc finger protein 79 
ZNF383                0.331   zinc finger protein 383 
ZFP3                  0.329   zinc finger protein-3 
ZNF420                0.329   zinc finger protein 420 
ZNF167                0.328   zinc finger protein 167 isoform 1 
ZNF696                0.328   zinc finger protein 696 
ZNF397                0.326   zinc finger protein 397 isoform 1 
ZNF345                0.326   zinc finger protein 345 
ZNF695                0.324   zinc finger protein SBZF3 
LOC647678             0.324   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.324   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.324   PREDICTED: hypothetical protein XP_002343697 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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