Guide to the Human Genome
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Name: LOC100131192 Sequence: fasta or formatted (175aa) NCBI GI: 239741451
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {429aa} PREDICTED: hypothetical protein
alt prot {429aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         21           3
 C cysteine            0.0          0           0
 D aspartate           2.3          4           1
 E glutamate           5.1          9           1
 F phenylalanine       2.3          4           1
 G glycine            12.6         22           2
 H histidine           3.4          6           1
 I isoleucine          0.6          1           1
 K lysine              0.6          1           1
 L leucine             9.1         16           2
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            12.0         21           3
 Q glutamine           6.9         12           1
 R arginine           11.4         20           3
 S serine              9.1         16           2
 T threonine           3.4          6           1
 V valine              4.6          8           1
 W tryptophan          2.9          5           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131192          0.741   PREDICTED: hypothetical protein 
LOC100131192          0.741   PREDICTED: hypothetical protein 
LOC283999             0.044   hypothetical protein LOC283999 
LOC100133756          0.035   PREDICTED: hypothetical protein, partial 
COL8A1                0.035   alpha 1 type VIII collagen precursor 
COL8A1                0.035   alpha 1 type VIII collagen precursor 
MAP7D1                0.029   MAP7 domain containing 1 
GLI4                  0.029   GLI-Kruppel family member GLI4 
GRIK5                 0.029   glutamate receptor KA2 precursor 
SYN1                  0.029   synapsin I isoform Ia 
SYN1                  0.029   synapsin I isoform Ib 
LOC646509             0.029   PREDICTED: hypothetical protein 
C1QL1                 0.029   complement component 1, q subcomponent-like 1 
C15orf52              0.029   hypothetical protein LOC388115 
PRR18                 0.026   proline rich region 18 
COL2A1                0.026   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.026   collagen, type II, alpha 1 isoform 2 precursor [Hom...
UBE2Z                 0.026   ubiquitin-conjugating enzyme E2Z 
GPR124                0.026   G protein-coupled receptor 124 
WBP11                 0.026   WW domain binding protein 11 
LOC100291554          0.024   PREDICTED: hypothetical protein XP_002345934 
LOC729506             0.024   PREDICTED: hypothetical protein 
LOC100290255          0.024   PREDICTED: hypothetical protein XP_002346835 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
LOC100287733          0.024   PREDICTED: hypothetical protein XP_002342667 
MAPK8IP1              0.024   mitogen-activated protein kinase 8 interacting protei...
COL4A5                0.024   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.024   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.024   type IV collagen alpha 5 isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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