Guide to the Human Genome
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Name: LOC100132556 Sequence: fasta or formatted (142aa) NCBI GI: 239746957
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.4          2           1
 C cysteine            6.3          9           1
 D aspartate           1.4          2           1
 E glutamate           3.5          5           1
 F phenylalanine       2.1          3           1
 G glycine             3.5          5           1
 H histidine           7.0         10           1
 I isoleucine         15.5         22           1
 K lysine              3.5          5           1
 L leucine             7.7         11           2
 M methionine          4.9          7           1
 N asparagine          3.5          5           1
 P proline             2.1          3           1
 Q glutamine           0.0          0           0
 R arginine            2.1          3           1
 S serine              3.5          5           1
 T threonine           9.2         13           1
 V valine              7.7         11           1
 W tryptophan          0.7          1           1
 Y tyrosine           14.1         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100134060          0.278   PREDICTED: hypothetical protein 
LOC100291751          0.275   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100129642          0.271   PREDICTED: hypothetical protein 
LOC100132983          0.271   PREDICTED: hypothetical protein 
LOC100291272          0.268   PREDICTED: hypothetical protein XP_002348172 
LOC100287989          0.268   PREDICTED: hypothetical protein XP_002343908 
LOC100131203          0.268   PREDICTED: hypothetical protein 
LOC100133226          0.264   PREDICTED: hypothetical protein 
LOC100131203          0.264   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.264   PREDICTED: similar to serine/threonine-protein kina...
LOC100132782          0.264   PREDICTED: hypothetical protein 
LOC100131488          0.261   PREDICTED: hypothetical protein 
LOC100129825          0.261   PREDICTED: hypothetical protein 
LOC100292028          0.257   PREDICTED: hypothetical protein XP_002346286 
LOC100133547          0.257   PREDICTED: hypothetical protein 
LOC100288460          0.257   PREDICTED: hypothetical protein XP_002342485 
LOC100134730          0.257   PREDICTED: hypothetical protein 
LOC100128473          0.257   PREDICTED: hypothetical protein 
LOC100132016          0.254   PREDICTED: hypothetical protein 
LOC100288317          0.250   PREDICTED: hypothetical protein XP_002342505 
LOC100134139          0.250   PREDICTED: hypothetical protein 
LOC100133553          0.250   PREDICTED: hypothetical protein, partial 
LOC100133450          0.250   PREDICTED: hypothetical protein, partial 
LOC100287975          0.250   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100128267          0.250   PREDICTED: hypothetical protein, partial 
LOC100129825          0.246   PREDICTED: hypothetical protein 
LOC100134411          0.246   PREDICTED: hypothetical protein 
LOC100133807          0.246   PREDICTED: similar to serine/threonine-protein kina...
LOC100134447          0.246   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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