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Search of human proteins with 239746265
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746265 PREDICTED: hypothetical protein XP_002343686 [Homo
sapiens]
(73 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751770 PREDICTED: hypothetical protein XP_002348010 [Homo ... 153 2e-38
gi|239746265 PREDICTED: hypothetical protein XP_002343686 [Homo ... 153 2e-38
gi|239757267 PREDICTED: hypothetical protein XP_002345242 [Homo ... 151 1e-37
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 30 0.53
gi|48762934 alpha 2 type I collagen [Homo sapiens] 29 0.90
gi|145312251 EPH receptor A6 isoform a [Homo sapiens] 29 0.90
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 28 1.2
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 28 1.5
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 28 1.5
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 28 1.5
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 28 1.5
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 28 1.5
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 27 3.4
gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Hom... 27 3.4
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 27 4.5
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 27 4.5
gi|169194762 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 27 4.5
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 27 4.5
gi|44662836 breast cancer anti-estrogen resistance 1 [Homo sapiens] 27 4.5
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|40255047 pleckstrin homology domain containing, family H (wit... 26 5.9
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 26 7.7
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 26 7.7
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 26 7.7
gi|239752937 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239747481 PREDICTED: hypothetical protein XP_002347535 [Homo ... 26 7.7
gi|239741353 PREDICTED: hypothetical protein XP_002342204 [Homo ... 26 7.7
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 26 7.7
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 26 7.7
>gi|239751770 PREDICTED: hypothetical protein XP_002348010 [Homo
sapiens]
Length = 73
Score = 153 bits (387), Expect = 2e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALG 60
MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALG
Sbjct: 1 MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALG 60
Query: 61 LVVRRARPVLPMM 73
LVVRRARPVLPMM
Sbjct: 61 LVVRRARPVLPMM 73
>gi|239746265 PREDICTED: hypothetical protein XP_002343686 [Homo
sapiens]
Length = 73
Score = 153 bits (387), Expect = 2e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALG 60
MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALG
Sbjct: 1 MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALG 60
Query: 61 LVVRRARPVLPMM 73
LVVRRARPVLPMM
Sbjct: 61 LVVRRARPVLPMM 73
>gi|239757267 PREDICTED: hypothetical protein XP_002345242 [Homo
sapiens]
Length = 73
Score = 151 bits (381), Expect = 1e-37
Identities = 72/73 (98%), Positives = 72/73 (98%)
Query: 1 MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALG 60
MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGR GPQWPLGNDLRQGKGGKRSARRALG
Sbjct: 1 MQPPYLVIPDTSTTASHVLVHPGNTGAAAPRTGRTGPQWPLGNDLRQGKGGKRSARRALG 60
Query: 61 LVVRRARPVLPMM 73
LVVRRARPVLPMM
Sbjct: 61 LVVRRARPVLPMM 73
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 22 PGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSAR 56
PG+ G PR G GP P G R+G+ G AR
Sbjct: 585 PGDVGPQGPR-GVQGPPGPAGKPGRRGRAGSDGAR 618
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 22 PGNTGAAAPR--TGRNGPQWPLGNDLRQGKGGKR 53
PG TG P G+ GP P G + RQG+ G +
Sbjct: 1377 PGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAK 1410
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 28.9 bits (63), Expect = 0.90
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 22 PGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALGLVVRRARPVLP 71
PG TG A R G GP G D GK G+ R +G R P P
Sbjct: 123 PGQTGPAGAR-GPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTP 171
>gi|145312251 EPH receptor A6 isoform a [Homo sapiens]
Length = 1130
Score = 28.9 bits (63), Expect = 0.90
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 27 AAAPRTGRNGPQWPLGNDLRQGKGGKRSARR 57
AAAP TG+ GP P+ R+G+ G A R
Sbjct: 23 AAAPATGQPGPSCPVPGTSRRGRPGTPPAGR 53
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 25 TGAAAPRTGRNGP-------QWPLGNDLRQGKGGKRSARRALGLVVRRARPVLPM 72
+G A R GP +W LG+ R+G+G R RR L RA P LP+
Sbjct: 53 SGERASPARRRGPGATTRPGRWSLGSVFRKGEGTWR-RRRLLAAADPRASPCLPV 106
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 23 GNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALGLV 62
G+ G+ P G+ GP P G D R G G AR G++
Sbjct: 542 GSPGSPGP-DGKTGPPGPAGQDGRPGPPGPPGARGQAGVM 580
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 5 YLVIPDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALGLVVR 64
Y +P V V P A PR GR GP W +G G+ A A + R
Sbjct: 23 YKALPIAGGAVVDVEVRPRPPPARLPRNGRRGPLWK-----GRGPAGRAPAASAETALPR 77
Query: 65 RARPVLP 71
P P
Sbjct: 78 PREPPEP 84
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 22 PGNTGAAAPRTGRNGPQWPL---------GNDLRQGKGGKRSARRALG 60
PG G+ P TG NGP PL G++ RQG G + A+G
Sbjct: 1213 PGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG 1259
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 22 PGNTGAAAPRTGRNGPQWPL---------GNDLRQGKGGKRSARRALG 60
PG G+ P TG NGP PL G++ RQG G + A+G
Sbjct: 1192 PGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG 1238
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 22 PGNTGAAAPRTGRNGPQWPL---------GNDLRQGKGGKRSARRALG 60
PG G+ P TG NGP PL G++ RQG G + A+G
Sbjct: 1299 PGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG 1345
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 26.9 bits (58), Expect = 3.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 22 PGNTGAAAPR-----TGRNGPQWPLGNDLRQGKGGKRSARRALGL 61
PG G PR G G + P G+ GK G+R R A G+
Sbjct: 1621 PGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGV 1665
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 22 PGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALGLVVRRARPVLP 71
PG+ G RTG GPQ P G+ +G+ G A G R P P
Sbjct: 1271 PGDPGLPG-RTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTP 1319
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 22 PGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALGLVVRRARPVLP 71
PG+ G GR G + G R+G+ G + R A G++ + P LP
Sbjct: 1847 PGDPG----EDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLP 1892
>gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Homo
sapiens]
Length = 802
Score = 26.9 bits (58), Expect = 3.4
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 1 MQPPYLVIPDTSTTASHVLVHPGNT---GAAAPRTGRNGPQWPLGNDLRQGKGGKRSAR 56
++PP V D A L PG+ G AP G P P G+D GG R +R
Sbjct: 40 LKPPSPVCLDLFPVAPEELRAPGSRWSLGTPAPLQGLLWPLSPGGSDTEITSGGMRPSR 98
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 22 PGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALGLVVRRARPVLP 71
PG +G PR G GP G+D GK GK R G R P P
Sbjct: 233 PGVSGPMGPR-GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP 281
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 22 PGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALGLVVRRARPVLP 71
PG +G PR G GP G+D GK GK R G R P P
Sbjct: 164 PGVSGPMGPR-GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP 212
>gi|169194762 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 34 RNGPQWPLGND--LRQGKGGKRSARRALGLVVRRARPVLPM 72
R+ W L D +R G G+ S R L RRA P LP+
Sbjct: 30 RSSQSWSLAADAGVRGGPRGRESGRGDAWLARRRAGPRLPL 70
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 19 LVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARR 57
LV P +G+A R G NG P R+ GGKR R
Sbjct: 302 LVAPSESGSAGRRGGTNGVATP-----REKLGGKRGVGR 335
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 19 LVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARR 57
LV P +G+A R G NG P R+ GGKR R
Sbjct: 302 LVAPSESGSAGRRGGTNGVATP-----REKLGGKRGVGR 335
>gi|44662836 breast cancer anti-estrogen resistance 1 [Homo sapiens]
Length = 870
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 12 STTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSA 55
S T +H+L G+ GA + PQ PL DL+ +SA
Sbjct: 471 SATVAHLLDLAGSAGATGSWRSPSEPQEPLVQDLQAAVAAVQSA 514
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 GNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARR 57
G AA R GR GP+ G + R G+GGK+ RR
Sbjct: 295 GEKPAAKGRGGR-GPKSLGGQNPRWGRGGKKPRRR 328
>gi|40255047 pleckstrin homology domain containing, family H (with
MyTH4 domain) member 3 [Homo sapiens]
Length = 793
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 9 PDTSTTASHVLVHPGNTGAAAPRTGRNGPQWPLGNDLRQGKGGKRSARRALG 60
P ++ + L PG A R R G G+ R+G GG +A LG
Sbjct: 581 PPSAALLAGALWSPGLAKRRAERARRGGAGRTAGSIAREGGGGAGTAAAVLG 632
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 22 PGNTGAAAPR--TGRNGPQWPLGNDLRQGKGGKRSARRALG 60
PG +G A P G+ GP G + RQG+ G + A G
Sbjct: 1359 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEG 1399
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 22 PGNTGAAAPR--TGRNGPQWPLGNDLRQGKGGKRSARRALG 60
PG +G A P G+ GP G + RQG+ G + A G
Sbjct: 1308 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEG 1348
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 22 PGNTGAAAPR--TGRNGPQWPLGNDLRQGKGGKRSARRALG 60
PG +G A P G+ GP G + RQG+ G + A G
Sbjct: 1347 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEG 1387
>gi|239752937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 40 PLGNDLRQGKGGKRSARRALGLVVRR 65
P G R+G+G + +R LG+ VRR
Sbjct: 34 PAGQGSRKGRGARVEGQRLLGVGVRR 59
>gi|239747481 PREDICTED: hypothetical protein XP_002347535 [Homo
sapiens]
Length = 101
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 40 PLGNDLRQGKGGKRSARRALGLVVRR 65
P G R+G+G + +R LG+ VRR
Sbjct: 34 PAGQGSRKGRGARVEGQRLLGVGVRR 59
>gi|239741353 PREDICTED: hypothetical protein XP_002342204 [Homo
sapiens]
Length = 101
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 40 PLGNDLRQGKGGKRSARRALGLVVRR 65
P G R+G+G + +R LG+ VRR
Sbjct: 34 PAGQGSRKGRGARVEGQRLLGVGVRR 59
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 22 PGNTGAAAP--RTGRNGPQWPLGNDLRQGKGGKRSARRALG 60
PG G P ++GR+G PLG D + G G + + A G
Sbjct: 129 PGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPG 169
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 31 RTGRNGPQWPLGNDLRQGKGGKRSARRALGLVVRRARP 68
R+G++G Q L R +GG + +R G+ R RP
Sbjct: 491 RSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRP 528
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,518,586
Number of Sequences: 37866
Number of extensions: 151849
Number of successful extensions: 615
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 98
length of query: 73
length of database: 18,247,518
effective HSP length: 46
effective length of query: 27
effective length of database: 16,505,682
effective search space: 445653414
effective search space used: 445653414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.