Search of human proteins with 239745787

Search of human proteins with 239745787

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745787 PREDICTED: hypothetical protein XP_002343554 [Homo
sapiens]
         (207 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756810 PREDICTED: hypothetical protein [Homo sapiens]           445   e-125
gi|239751292 PREDICTED: hypothetical protein XP_002347787 [Homo ...   445   e-125
gi|239745787 PREDICTED: hypothetical protein XP_002343554 [Homo ...   445   e-125
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]           32   0.29 
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]           32   0.29 
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]           32   0.29 
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]            31   0.85 
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ...    31   0.85 
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ...    31   0.85 
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               31   0.85 
gi|169210827 PREDICTED: hypothetical protein [Homo sapiens]            30   1.1  
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    30   1.4  
gi|24308065 netrin 5 [Homo sapiens]                                    30   1.4  
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    30   1.4  
gi|13375913 transmembrane protein 149 [Homo sapiens]                   30   1.9  
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     29   2.5  
gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]            29   2.5  
gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo ...    29   2.5  
gi|149944536 ichthyin protein [Homo sapiens]                           29   2.5  
gi|223972690 adenosine deaminase domain containing 2 isoform 2 [...    29   2.5  
gi|223972688 adenosine deaminase domain containing 2 isoform 1 [...    29   2.5  
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    29   2.5  
gi|4503489 ephrin-B3 precursor [Homo sapiens]                          29   2.5  
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       29   3.2  
gi|182765442 homeobox A10 isoform a [Homo sapiens]                     29   3.2  
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]            29   3.2  
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]            29   3.2  
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ...    29   3.2  
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         29   3.2  
gi|115511036 alpha-kinase 3 [Homo sapiens]                             29   3.2  

>gi|239756810 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 207

 Score =  445 bits (1145), Expect = e-125
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
           MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR
Sbjct: 1   MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60

Query: 61  WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
           WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ
Sbjct: 61  WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120

Query: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
           MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG
Sbjct: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180

Query: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
           ARGTQAMHPVREAGPGWISMESQCQDP
Sbjct: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207


>gi|239751292 PREDICTED: hypothetical protein XP_002347787 [Homo
           sapiens]
          Length = 207

 Score =  445 bits (1145), Expect = e-125
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
           MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR
Sbjct: 1   MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60

Query: 61  WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
           WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ
Sbjct: 61  WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120

Query: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
           MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG
Sbjct: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180

Query: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
           ARGTQAMHPVREAGPGWISMESQCQDP
Sbjct: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207


>gi|239745787 PREDICTED: hypothetical protein XP_002343554 [Homo
           sapiens]
          Length = 207

 Score =  445 bits (1145), Expect = e-125
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
           MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR
Sbjct: 1   MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60

Query: 61  WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
           WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ
Sbjct: 61  WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120

Query: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
           MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG
Sbjct: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180

Query: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
           ARGTQAMHPVREAGPGWISMESQCQDP
Sbjct: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207


>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 22/53 (41%), Positives = 25/53 (47%)

Query: 3   LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRAC 55
           LPAP  + FG +     +  G    VA LP    G  GKG    PAP GTR C
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCC 179


>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 22/53 (41%), Positives = 25/53 (47%)

Query: 3   LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRAC 55
           LPAP  + FG +     +  G    VA LP    G  GKG    PAP GTR C
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCC 179


>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 22/53 (41%), Positives = 25/53 (47%)

Query: 3   LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRAC 55
           LPAP  + FG +     +  G    VA LP    G  GKG    PAP GTR C
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCC 179


>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 44  GAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGS 92
           GAG +  G  A  R P    P       GR      GDRGR G+  CGS
Sbjct: 417 GAGRSAAGDEARARGPAGRAPSPSAALSGR------GDRGRTGATRCGS 459


>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
           sapiens]
          Length = 490

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 44  GAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGS 92
           GAG +  G  A  R P    P       GR      GDRGR G+  CGS
Sbjct: 443 GAGRSAAGDEARARGPAGRAPSPSAALSGR------GDRGRTGATRCGS 485


>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
           sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 44  GAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGS 92
           GAG +  G  A  R P    P       GR      GDRGR G+  CGS
Sbjct: 475 GAGRSAAGDEARARGPAGRAPSPSAALSGR------GDRGRTGATRCGS 517


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 31   LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPR-KQGRHLYLEV-GDRGRAGSQ 88
            LPG+ GG    GL   P P G +     P  P  + GP+ +QG      + G RG  G+Q
Sbjct: 1316 LPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSP-GIQGPKGEQGLPGQPGIQGKRGHRGAQ 1374

Query: 89   G----CGSHG 94
            G    CG  G
Sbjct: 1375 GDQGPCGDPG 1384



 Score = 29.3 bits (64), Expect = 2.5
 Identities = 30/72 (41%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 22  LGGTVPVACLPGLVG--GCWG-KGLGAGPAPLGTRACWRAPRWPVPVAGPRKQG-RHLYL 77
           +G T PV  LPG VG  G  G KG    P PLG +       +P P   P   G   L  
Sbjct: 851 IGETGPVG-LPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPG 909

Query: 78  EVGDRGRAGSQG 89
            VG RG  GSQG
Sbjct: 910 HVGARGPPGSQG 921


>gi|169210827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 139

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 6   PCRQSFGCRGCRHQKCLGGTVPVACLPG--LVGGCWGKGLGAGPAPLGTRACWRAPRWPV 63
           P R   G    R  K LG   P   LPG   VGG WGK        LG+    R     V
Sbjct: 37  PGRDPSGLCYWRKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNR-----V 91

Query: 64  PVAGPRKQGRHLYL 77
           P +  R + RH+ L
Sbjct: 92  PSSQSRGKARHMPL 105


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
           sapiens]
          Length = 1691

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 31  LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPR-KQGRHLYLEV----GDRGRA 85
           LPGL G    +G G    P G          P+  +GP+ K+G  +   +    GDRG +
Sbjct: 508 LPGLKGARGDRGSGGAQGPAGAPGLVG----PLGPSGPKGKKGEPILSTIQGMPGDRGDS 563

Query: 86  GSQG 89
           GSQG
Sbjct: 564 GSQG 567


>gi|24308065 netrin 5 [Homo sapiens]
          Length = 489

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 26/85 (30%)

Query: 30  CLPG----LVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRK-------------QG 72
           C PG    ++   W  G   GP     R  W  P WP  + GP +               
Sbjct: 83  CTPGPPALILSAAWASG---GP----WRLLWHRPAWPGALGGPERVTFHSTPGPKATVAA 135

Query: 73  RHLYLEVGDRGRAGSQGCGSHGAVQ 97
            HL +E G  G+AG    G  G  Q
Sbjct: 136 SHLRVEFG--GQAGLAAAGLRGRCQ 158


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
           sapiens]
          Length = 1690

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 31  LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPR-KQGRHLYLEV----GDRGRA 85
           LPGL G    +G G    P G          P+  +GP+ K+G  +   +    GDRG +
Sbjct: 507 LPGLKGARGDRGSGGAQGPAGAPGLVG----PLGPSGPKGKKGEPILSTIQGMPGDRGDS 562

Query: 86  GSQG 89
           GSQG
Sbjct: 563 GSQG 566


>gi|13375913 transmembrane protein 149 [Homo sapiens]
          Length = 355

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 37/122 (30%), Positives = 43/122 (35%), Gaps = 22/122 (18%)

Query: 19  QKCLGGTVPVACLPG---LVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRKQGRHL 75
           +KC  G     C P    L   C G  +   PA  G R  WR    PVP  G      H 
Sbjct: 74  RKCSSGQ----CNPDGAELCSPCGGGAVTPTPAAGGGRTPWRCRERPVPAKG------HC 123

Query: 76  YLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCG------LPIGFQVLRQMLAGILQLV 129
            L  G+ G   SQ      +    I WR    V        LP+   VL   LA I  L+
Sbjct: 124 PLTPGNPGAPSSQ---ERSSPASSIAWRTPEPVPQQAWPNFLPLVVLVLLLTLAVIAILL 180

Query: 130 LI 131
            I
Sbjct: 181 FI 182


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 40  GKGLGAGPAPLGTRACWRAPRWPVPVAG-PRKQG-RHLYLEVGDRGRAGSQG 89
           GKG+G GP P+G       PR P   AG P  QG +    E G+ G+ G  G
Sbjct: 83  GKGVGLGPGPMGL----MGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAG 130


>gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 459

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 22/96 (22%)

Query: 37  GCWGKGLGAGPAPLG----------------TRACWR-APRWP--VPVAGPRKQGRHLYL 77
           GCWG    A P P G                 + C + APR     P  GP    R L  
Sbjct: 160 GCWGSAPRALPCPFGRGQLPACCSPATVRPAAQGCAQPAPRVAAGTPAVGPTLALRRLDK 219

Query: 78  EVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPI 113
               R  A S+  G   A    + W  AGR C LP+
Sbjct: 220 LPSSRAPAPSKLTGGSLA---GLLWALAGRACSLPL 252


>gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo
           sapiens]
          Length = 459

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 22/96 (22%)

Query: 37  GCWGKGLGAGPAPLG----------------TRACWR-APRWP--VPVAGPRKQGRHLYL 77
           GCWG    A P P G                 + C + APR     P  GP    R L  
Sbjct: 160 GCWGSAPRALPCPFGRGQLPACCSPATVRPAAQGCAQPAPRVAAGTPAVGPTLALRRLDK 219

Query: 78  EVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPI 113
               R  A S+  G   A    + W  AGR C LP+
Sbjct: 220 LPSSRAPAPSKLTGGSLA---GLLWALAGRACSLPL 252


>gi|149944536 ichthyin protein [Homo sapiens]
          Length = 466

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 46  GPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAA 105
           G +  GT   W A     P  GP   G       GD+ R  +   GS GAV+ R+G  A 
Sbjct: 3   GDSSPGTLPLWDASL--SPPLGPDPGGFSRASHAGDKSRPPAPELGSPGAVRPRVGSCAP 60

Query: 106 G 106
           G
Sbjct: 61  G 61


>gi|223972690 adenosine deaminase domain containing 2 isoform 2
           [Homo sapiens]
          Length = 583

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 8/36 (22%)

Query: 40  GKGLGAGPAPLGTRACW--------RAPRWPVPVAG 67
           G G GAG   LG    W        +APR PVP AG
Sbjct: 68  GPGAGAGVGELGAARAWENLGEQMGKAPRVPVPPAG 103


>gi|223972688 adenosine deaminase domain containing 2 isoform 1
           [Homo sapiens]
          Length = 665

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 8/36 (22%)

Query: 40  GKGLGAGPAPLGTRACW--------RAPRWPVPVAG 67
           G G GAG   LG    W        +APR PVP AG
Sbjct: 68  GPGAGAGVGELGAARAWENLGEQMGKAPRVPVPPAG 103


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 31   LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQG- 89
            LPGL G    KG    P PLG         +P P  GP   G       G +G  G  G 
Sbjct: 948  LPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPG-----PTGLKGDKGPPGP 1002

Query: 90   CGSHGAVQQRIGWRAAGRVCGLP 112
             G++G+  +R     AG + GLP
Sbjct: 1003 VGANGSPGERGPLGPAGGI-GLP 1024


>gi|4503489 ephrin-B3 precursor [Homo sapiens]
          Length = 340

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 24  GTVPVACLPGLVGGCWGKGLGA-GPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDR 82
           G +P   +P + G   G  L   G A  G   CWR  R         K     +   G  
Sbjct: 218 GPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR--------AKPSESRHPGPGSF 269

Query: 83  GRAGSQGCGSHGAVQQR 99
           GR GS G G  G +  R
Sbjct: 270 GRGGSLGLGGGGGMGPR 286


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 32   PGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRKQGRH----LYLEVGDRGRAGS 87
            PG  G    +G    P P G      AP  P PV  P   G+         +G  GRAG 
Sbjct: 1058 PGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGK 1117

Query: 88   QG 89
            +G
Sbjct: 1118 RG 1119


>gi|182765442 homeobox A10 isoform a [Homo sapiens]
          Length = 410

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 3   LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGA---GPAPL 50
           LP      +G + C     LGG    A  PG  GG  G G GA   GP+P+
Sbjct: 65  LPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPI 115


>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 461

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 44  GAGPAPLGTRACWRAPRW----PVPVAGPRKQGRHLYL-EVGDRGRAGSQGCGSHGAVQQ 98
           G GP P    A   A RW    P P+    K+G  L   +     RAG     + GA  +
Sbjct: 349 GLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGE 408

Query: 99  RIGWRAAGRVCGL---PIGFQVLRQ 120
           R+G R   R  GL   P+G Q  R+
Sbjct: 409 RLGPRGTRRARGLQLRPVGGQSRRE 433


>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 461

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 44  GAGPAPLGTRACWRAPRW----PVPVAGPRKQGRHLYL-EVGDRGRAGSQGCGSHGAVQQ 98
           G GP P    A   A RW    P P+    K+G  L   +     RAG     + GA  +
Sbjct: 349 GLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGE 408

Query: 99  RIGWRAAGRVCGL---PIGFQVLRQ 120
           R+G R   R  GL   P+G Q  R+
Sbjct: 409 RLGPRGTRRARGLQLRPVGGQSRRE 433


>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
           sapiens]
          Length = 461

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 44  GAGPAPLGTRACWRAPRW----PVPVAGPRKQGRHLYL-EVGDRGRAGSQGCGSHGAVQQ 98
           G GP P    A   A RW    P P+    K+G  L   +     RAG     + GA  +
Sbjct: 349 GLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGE 408

Query: 99  RIGWRAAGRVCGL---PIGFQVLRQ 120
           R+G R   R  GL   P+G Q  R+
Sbjct: 409 RLGPRGTRRARGLQLRPVGGQSRRE 433


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 17/60 (28%)

Query: 31  LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGC 90
           LPG+ G     GL   P P G R     P +P                 G+RG+ G++GC
Sbjct: 886 LPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFP-----------------GERGKPGAEGC 928


>gi|115511036 alpha-kinase 3 [Homo sapiens]
          Length = 1907

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 37/105 (35%), Positives = 40/105 (38%), Gaps = 23/105 (21%)

Query: 3   LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPRWP 62
           LP P       R CRHQ                 G  G GLGAGP   GT   W AP  P
Sbjct: 96  LPRPPGPLQTRRYCRHQ-----------------GRQGSGLGAGPG-AGT---W-APA-P 132

Query: 63  VPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGR 107
             V+ PR  GR    E   +         + GA Q R G  AAGR
Sbjct: 133 PGVSKPRCPGRARPGEGQQQVTTARPPAINRGARQPRAGAAAAGR 177


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.145    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,647,336
Number of Sequences: 37866
Number of extensions: 513758
Number of successful extensions: 1995
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1956
Number of HSP's gapped (non-prelim): 83
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.