Guide to the Human Genome
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Name: LOC100133017 Sequence: fasta or formatted (159aa) NCBI GI: 239745536
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         14           2
 C cysteine            8.8         14           1
 D aspartate           3.1          5           1
 E glutamate           1.3          2           1
 F phenylalanine       1.9          3           1
 G glycine             6.9         11           2
 H histidine           5.7          9           1
 I isoleucine          3.8          6           2
 K lysine              1.3          2           1
 L leucine            12.6         20           2
 M methionine          3.1          5           1
 N asparagine          1.3          2           1
 P proline             9.4         15           2
 Q glutamine           1.9          3           1
 R arginine            5.0          8           2
 S serine              9.4         15           1
 T threonine           1.3          2           1
 V valine             11.9         19           1
 W tryptophan          1.3          2           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128100          0.994   PREDICTED: hypothetical protein 
LOC100132856          0.984   PREDICTED: hypothetical protein 
LOC100128100          0.216   PREDICTED: hypothetical protein 
LOC100128100          0.213   PREDICTED: hypothetical protein 
LOC100134353          0.038   PREDICTED: hypothetical protein 
LOC100293155          0.035   PREDICTED: hypothetical protein 
LOC100134279          0.029   PREDICTED: hypothetical protein, partial 
LOC100133844          0.029   PREDICTED: hypothetical protein 
LOC100133553          0.029   PREDICTED: hypothetical protein, partial 
LOC100133975          0.029   PREDICTED: hypothetical protein, partial 
LOC100132016          0.029   PREDICTED: hypothetical protein 
LOC100132016          0.029   PREDICTED: hypothetical protein 
LOC100132679          0.025   PREDICTED: hypothetical protein 
LOC100133776          0.025   PREDICTED: similar to hCG1820441 
LOC100129802          0.022   PREDICTED: hypothetical protein, partial 
LOC100129802          0.022   PREDICTED: hypothetical protein 
LOC100294466          0.022   PREDICTED: hypothetical protein, partial 
LOC100133173          0.022   PREDICTED: hypothetical protein 
LOC100294083          0.022   PREDICTED: hypothetical protein, partial 
LOC100128267          0.019   PREDICTED: hypothetical protein, partial 
LOC100134395          0.019   PREDICTED: hypothetical protein, partial 
LOC100288317          0.019   PREDICTED: hypothetical protein XP_002342505 
LOC100134576          0.019   PREDICTED: hypothetical protein 
LOC100133741          0.016   PREDICTED: hypothetical protein 
LOC100133515          0.016   PREDICTED: hypothetical protein 
LOC100133807          0.016   PREDICTED: similar to serine/threonine-protein kina...
LOC100291272          0.016   PREDICTED: hypothetical protein XP_002348172 
LOC100287989          0.016   PREDICTED: hypothetical protein XP_002343908 
LOC100133226          0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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