Guide to the Human Genome
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Name: LOC100128100 Sequence: fasta or formatted (178aa) NCBI GI: 239756560
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {178aa} PREDICTED: hypothetical protein
alt prot {159aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         11           1
 C cysteine            9.6         17           2
 D aspartate           3.9          7           1
 E glutamate           2.8          5           1
 F phenylalanine       1.1          2           1
 G glycine             6.7         12           1
 H histidine           5.1          9           2
 I isoleucine          1.1          2           1
 K lysine              1.1          2           1
 L leucine             7.3         13           1
 M methionine          3.4          6           1
 N asparagine          0.6          1           1
 P proline            15.2         27           2
 Q glutamine           3.4          6           1
 R arginine            6.7         12           1
 S serine              7.9         14           1
 T threonine           4.5          8           2
 V valine             11.8         21           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128100          0.995   PREDICTED: hypothetical protein 
LOC100133017          0.182   PREDICTED: hypothetical protein 
LOC100128100          0.182   PREDICTED: hypothetical protein 
LOC100132856          0.179   PREDICTED: hypothetical protein 
RAPH1                 0.041   Ras association and pleckstrin homology domains 1 is...
C22orf29              0.030   hypothetical protein LOC79680 
ZFHX3                 0.030   AT-binding transcription factor 1 
FMN1                  0.027   formin 1 
MIA3                  0.027   melanoma inhibitory activity family, member 3 [Homo...
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100133305          0.024   PREDICTED: hypothetical protein 
LOC100133305          0.024   PREDICTED: hypothetical protein 
RERE                  0.024   atrophin-1 like protein isoform b 
RERE                  0.024   atrophin-1 like protein isoform a 
RERE                  0.024   atrophin-1 like protein isoform a 
NACA                  0.024   nascent polypeptide-associated complex alpha subuni...
NHSL1                 0.022   NHS-like 1 
CREBBP                0.022   CREB binding protein isoform b 
CREBBP                0.022   CREB binding protein isoform a 
CASKIN1               0.019   CASK interacting protein 1 
WASF1                 0.019   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.019   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.019   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.019   Wiskott-Aldrich syndrome protein family member 1 [Hom...
TBKBP1                0.019   TBK1 binding protein 1 
SMR3A                 0.019   submaxillary gland androgen regulated protein 3 homo...
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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