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Search of human proteins with 239745404
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745404 PREDICTED: hypothetical protein XP_002343488 [Homo
sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745404 PREDICTED: hypothetical protein XP_002343488 [Homo ... 383 e-107
gi|239756477 PREDICTED: similar to predicted protein [Homo sapiens] 223 9e-59
gi|239751001 PREDICTED: similar to predicted protein [Homo sapiens] 223 9e-59
gi|148596957 myosin binding protein C, cardiac [Homo sapiens] 32 0.23
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 32 0.30
gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens] 31 0.52
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 31 0.52
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 31 0.52
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 31 0.52
gi|116256460 zinc finger protein 775 [Homo sapiens] 31 0.68
gi|239752904 PREDICTED: hypothetical protein [Homo sapiens] 30 0.89
gi|239747453 PREDICTED: hypothetical protein XP_002347537 [Homo ... 30 0.89
gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo ... 30 0.89
gi|47271475 SPOC domain containing 1 [Homo sapiens] 30 0.89
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 30 1.5
gi|156938257 leucine rich repeat containing 16B [Homo sapiens] 30 1.5
gi|194097341 period 1 [Homo sapiens] 29 2.0
gi|40353727 synaptopodin isoform A [Homo sapiens] 29 2.0
gi|12056461 crystallin, beta A3 [Homo sapiens] 29 2.0
gi|110227615 echinoderm microtubule associated protein like 3 [H... 29 2.0
gi|115392150 hypothetical protein LOC644815 [Homo sapiens] 29 2.0
gi|23510333 pygopus homolog 2 [Homo sapiens] 29 2.0
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 29 2.6
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming... 29 2.6
gi|223972612 Crm, cramped-like [Homo sapiens] 28 3.4
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens] 28 3.4
gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo sapi... 28 3.4
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 28 3.4
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 28 3.4
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 28 3.4
>gi|239745404 PREDICTED: hypothetical protein XP_002343488 [Homo
sapiens]
Length = 183
Score = 383 bits (984), Expect = e-107
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MVTVGPFCIAPIFDGPTCAPHTWSHRTGQILLFLSSPGASFIEATQDPLLKAKLKHSTPF 60
MVTVGPFCIAPIFDGPTCAPHTWSHRTGQILLFLSSPGASFIEATQDPLLKAKLKHSTPF
Sbjct: 1 MVTVGPFCIAPIFDGPTCAPHTWSHRTGQILLFLSSPGASFIEATQDPLLKAKLKHSTPF 60
Query: 61 SFRWPPFDSRQPELVTVFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHA 120
SFRWPPFDSRQPELVTVFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHA
Sbjct: 61 SFRWPPFDSRQPELVTVFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHA 120
Query: 121 VLLESDLEERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNL 180
VLLESDLEERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNL
Sbjct: 121 VLLESDLEERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNL 180
Query: 181 EAP 183
EAP
Sbjct: 181 EAP 183
>gi|239756477 PREDICTED: similar to predicted protein [Homo sapiens]
Length = 291
Score = 223 bits (567), Expect = 9e-59
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 77 VFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHAVLLESDLEERFRATAR 136
VFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHAVLLESDLEERFRATAR
Sbjct: 185 VFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHAVLLESDLEERFRATAR 244
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNLEAP 183
PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNLEAP
Sbjct: 245 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNLEAP 291
>gi|239751001 PREDICTED: similar to predicted protein [Homo sapiens]
Length = 291
Score = 223 bits (567), Expect = 9e-59
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 77 VFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHAVLLESDLEERFRATAR 136
VFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHAVLLESDLEERFRATAR
Sbjct: 185 VFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHAVLLESDLEERFRATAR 244
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNLEAP 183
PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNLEAP
Sbjct: 245 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNLEAP 291
>gi|148596957 myosin binding protein C, cardiac [Homo sapiens]
Length = 1274
Score = 32.3 bits (72), Expect = 0.23
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 97 ITATSAENRVTFRVRFDSDAGSHAVL------------LESDLEERFRATARPPGERTGA 144
+ + +T R +D GS+AV+ +E++ E A A P E TGA
Sbjct: 57 LATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFDLKVIEAEKAEPMLAPAPAPAEATGA 116
Query: 145 --GAGEPRARGGQEFPSHTRSNRTPQNGDGPRSP 176
A P A G+ PS S+ NG P +P
Sbjct: 117 PGEAPAPAAELGESAPSPKGSSSAALNGPTPGAP 150
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 32.0 bits (71), Expect = 0.30
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 122 LLESDLEERFRATARPPGERTGAGAGEPR 150
LL D +E A+ PPG R GAGAG PR
Sbjct: 1027 LLPWDSDESPEASPGPPGPRRGAGAGGPR 1055
>gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]
Length = 366
Score = 31.2 bits (69), Expect = 0.52
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 136 RPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPNLEAP 183
RPPG G+PR ++ R P G G +P P AP
Sbjct: 52 RPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAP 99
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 31.2 bits (69), Expect = 0.52
Identities = 17/50 (34%), Positives = 20/50 (40%)
Query: 128 EERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPP 177
E+ R A PG R G PR G P+ + GDGP PP
Sbjct: 878 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP 927
Score = 27.7 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPP 177
PPGE+ G P G P R + P DGP+ PP
Sbjct: 1217 PPGEKGENGDVGPMGPPG---PPGPRGPQGPNGADGPQGPP 1254
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 31.2 bits (69), Expect = 0.52
Identities = 17/50 (34%), Positives = 20/50 (40%)
Query: 128 EERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPP 177
E+ R A PG R G PR G P+ + GDGP PP
Sbjct: 827 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP 876
Score = 27.7 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPP 177
PPGE+ G P G P R + P DGP+ PP
Sbjct: 1166 PPGEKGENGDVGPMGPPG---PPGPRGPQGPNGADGPQGPP 1203
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 31.2 bits (69), Expect = 0.52
Identities = 17/50 (34%), Positives = 20/50 (40%)
Query: 128 EERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPP 177
E+ R A PG R G PR G P+ + GDGP PP
Sbjct: 866 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP 915
Score = 27.7 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPP 177
PPGE+ G P G P R + P DGP+ PP
Sbjct: 1205 PPGEKGENGDVGPMGPPG---PPGPRGPQGPNGADGPQGPP 1242
>gi|116256460 zinc finger protein 775 [Homo sapiens]
Length = 537
Score = 30.8 bits (68), Expect = 0.68
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 120 AVLLESDLEERFRATARPPGERTGAGAGEPRARGGQEFPSHTR-----------SNRTPQ 168
A+L+E D E F+ P +T G PRA GGQE R + R P
Sbjct: 34 AMLVEKDKENIFQQHRGLPPRQT---MGRPRALGGQEESGSPRWAPPTEQDAGLAGRAPG 90
Query: 169 NGDGPRSP 176
+ GP SP
Sbjct: 91 SASGPLSP 98
>gi|239752904 PREDICTED: hypothetical protein [Homo sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 0.89
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNG---DGPRSPP 177
PPG G + R + FPSHTR + + +GP +PP
Sbjct: 69 PPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPP 112
>gi|239747453 PREDICTED: hypothetical protein XP_002347537 [Homo
sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 0.89
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNG---DGPRSPP 177
PPG G + R + FPSHTR + + +GP +PP
Sbjct: 69 PPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPP 112
>gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo
sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 0.89
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNG---DGPRSPP 177
PPG G + R + FPSHTR + + +GP +PP
Sbjct: 69 PPGLARGLPHSQGRPQSAAGFPSHTRLSTAEEESGLCEGPAAPP 112
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 30.4 bits (67), Expect = 0.89
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 129 ERFRATARPPGER-TGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
E RPP + TG+G GEP G + P GDGP+ P
Sbjct: 250 ESLGGPCRPPSPKDTGSGPGEPGGSGAGCASGTEKFGYLPATGDGPQPGSP 300
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 [Homo
sapiens]
Length = 1461
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 119 HAVLLESDLEERFRATARP-----PGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDG 172
H+ LL+ L E F P P +R G G R R PSH+ + P +G G
Sbjct: 1328 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGG 1386
>gi|156938257 leucine rich repeat containing 16B [Homo sapiens]
Length = 1372
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 126 DLEERFRATARPPGERTGAGAGEPRARGG----QEFPSHTRSNRTPQNG--DGPRSPPPN 179
D+E + PPG +G G +P A G E P+H R G PR+ PP
Sbjct: 929 DMESQLGNLGIPPGWFSGLGGSQPTASGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPG 988
Query: 180 LEAP 183
P
Sbjct: 989 PGRP 992
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 29.3 bits (64), Expect = 2.0
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Query: 42 IEATQDPLLKAKLKHSTPFSFRWPPFDSRQPELVTVFTSNLYNQD--SIPQTTVPWKITA 99
++A Q+ + L+ P S + + E +T L NQD S+ + + +I
Sbjct: 175 VQANQEYYQQWSLEEGEPCSMDMSTYTLEELEHITS-EYTLQNQDTFSVAVSFLTGRIVY 233
Query: 100 TSAENRVTFRVRFDSDAGSH--AVLLESDLEERFRATA--RPPGERTGAGAGEPRARGGQ 155
S + V R + D G+ +L D+ + +TA R P TGA AG Q
Sbjct: 234 ISEQAAVLLRCKRDVFRGTRFSELLAPQDVGVFYGSTAPSRLPTWGTGASAGSGLRDFTQ 293
Query: 156 EFPSHTRSNRTPQNGDGPRSPP 177
E R P GPR P
Sbjct: 294 EKSVFCRIRGGPDRDPGPRYQP 315
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 29.3 bits (64), Expect = 2.0
Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 26/188 (13%)
Query: 6 PFCIAPIFDG---PTCAPHTWSHRTGQILLFLSSPGASFIEATQDPLLKAK-LKHSTPFS 61
P ++P + G P WS R Q +P SF +T++ ++A+ + S P S
Sbjct: 634 PTAVSPPYGGDISPVSPSRAWSPRAKQ------APRPSF--STRNAGIEAQDRRESLPTS 685
Query: 62 FRWPPFDSRQPELVTVFTS------NLYNQDSIPQTTVPWKITATSAENRVTFRVRFDSD 115
W P SR P + + S + S P P + S R +R +++
Sbjct: 686 PPWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRPETE 745
Query: 116 AGSHAVLLESDLEERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRS 175
A + L++ L AR + PR+ G + P R P P
Sbjct: 746 ARPPSRQLQALLARNIINAARRK-------SASPRSAGAEN-PRPFSPPRAPPPPPPPPP 797
Query: 176 PPPNLEAP 183
PPP + +P
Sbjct: 798 PPPRMRSP 805
>gi|12056461 crystallin, beta A3 [Homo sapiens]
Length = 215
Score = 29.3 bits (64), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 69 SRQPELVTVFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDS 114
+ Q EL T+ T+ + + P + PWKIT EN R+ F S
Sbjct: 5 AEQQELETLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTS 50
>gi|110227615 echinoderm microtubule associated protein like 3 [Homo
sapiens]
Length = 896
Score = 29.3 bits (64), Expect = 2.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 124 ESDLEERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSP-PPNLEA 182
+++ E +++ PPG G P +G E PS T+S + G SP PP +
Sbjct: 86 QTETEVELKSSPGPPG----LSNGPPAPQGASEEPSGTQSEGGGSSSSGAGSPGPPGILR 141
Query: 183 P 183
P
Sbjct: 142 P 142
>gi|115392150 hypothetical protein LOC644815 [Homo sapiens]
Length = 823
Score = 29.3 bits (64), Expect = 2.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 15 GPTCA-PHTWSHRTGQILLFLSSPGASFIEATQDPLL--KAKLKHSTPF 60
GP A PH W + GQ+ L PG+ + P+ +A +H +PF
Sbjct: 735 GPAMAGPHHWQAKGGQVPRLLPDPGSPRLAQNARPMTDGRATEEHPSPF 783
>gi|23510333 pygopus homolog 2 [Homo sapiens]
Length = 406
Score = 29.3 bits (64), Expect = 2.0
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 137 PPGERTGAGAG-EPRARGGQEFPSHTRSNRTPQNGDGPRSPPP-NLEAP 183
PPG TG G G +P R FP + GP PPP N+ P
Sbjct: 115 PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFP 163
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 28.9 bits (63), Expect = 2.6
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 118 SHAVLLESDLEERFRATARPPGERTG---AGAGEPRARGGQEFPSHTRSNRTPQNGDGPR 174
+HAV R RA AR P G AGA PR GG R+ R +G G
Sbjct: 80 AHAVPHPVRPAARLRAPARDPVPLAGRQRAGAA-PRGPGGPARTPAVRAGRRAADGPGEE 138
Query: 175 SPPP 178
+P P
Sbjct: 139 APAP 142
>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
sequence-like 1 [Homo sapiens]
Length = 491
Score = 28.9 bits (63), Expect = 2.6
Identities = 23/96 (23%), Positives = 33/96 (34%)
Query: 83 YNQDSIPQTTVPWKITATSAENRVTFRVRFDSDAGSHAVLLESDLEERFRATARPPGERT 142
YNQ P +++ R + F H+ L+ +++ + AR P
Sbjct: 253 YNQPHEDIRAPPAELSMAPPPPRSVSQETFRISTRKHSNLITVPIQDDSNSGAREPPPPA 312
Query: 143 GAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
A A GQ SH PQ P PPP
Sbjct: 313 PAPAHHHPEYQGQPVVSHPHHIMPPQQHYAPPPPPP 348
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 28.5 bits (62), Expect = 3.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 136 RPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNG-DGPRSPPPNLEAP 183
R E + G G A +E R +TP+ G DGP +PP +AP
Sbjct: 21 RAADEESLEGEGAGGADAAEESSGTKRDEKTPRAGADGPPAPPGAPQAP 69
>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 28.5 bits (62), Expect = 3.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 133 ATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPPN 179
A +P G T G R GGQE + R R G S P+
Sbjct: 662 AATKPQGPATSTRTGSQRQEGGQEAAAPARQGRKKPAGKSLASEAPS 708
>gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo
sapiens]
Length = 862
Score = 28.5 bits (62), Expect = 3.4
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 128 EERFRATARPPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
++ R + + AGAGE R G PS + P P PPP
Sbjct: 170 KDETRVSTNGSDDPEDAGAGENRRVSGNNSPSLSNGGFKPSRPPRPSRPPP 220
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 28.5 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
P G GA G P+ GG P + P + PR PPP
Sbjct: 1672 PDGGLKGAAEGPPKRPGGSS-PLNAVPCEGPPGSEPPRRPPP 1712
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 28.5 bits (62), Expect = 3.4
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 128 EERFRATARPPGERTGA---GAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
+ + R++ PPG+ G G +P+ G P PQ G+ P+ PPP
Sbjct: 167 DNKSRSSRSPPGKPQGPPPQGGNQPQ---GPPPPPGKPQGPPPQGGNKPQGPPP 217
Score = 27.7 bits (60), Expect = 5.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 129 ERFRATARPPGERTGA---GAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
++ R+ PPG+ G G +P+ G P PQ G+ P+ PPP
Sbjct: 106 DKSRSPRSPPGKPQGPPPQGGNQPQ---GPPPPPGKPQGPPPQGGNKPQGPPP 155
Score = 27.7 bits (60), Expect = 5.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 132 RATARPPGERTGA---GAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
R++ PPG+ G G +P+ G P PQ G+ P+ PPP
Sbjct: 295 RSSRSPPGKPQGPPPQGGNQPQ---GPPPPPGKPQGPPPQGGNKPQGPPP 341
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 28.5 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 129 ERFRATARPPGERTGA---GAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
++ R++ PPG+ G G +P+ G P PQ G+ P+ PPP
Sbjct: 207 DKSRSSQSPPGKPQGPPPQGGNQPQ---GPPPPPGKPQGPPPQGGNKPQGPPP 256
Score = 28.1 bits (61), Expect = 4.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 137 PPGERTGAGAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
PPG+ G ++R Q P + PQ G+ P+ PPP
Sbjct: 195 PPGKPQGPPPQGDKSRSSQSPPGKPQGP-PPQGGNQPQGPPP 235
Score = 27.7 bits (60), Expect = 5.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 129 ERFRATARPPGERTGA---GAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
++ R+ PPG+ G G +P+ G P PQ G+ P+ PPP
Sbjct: 85 DKSRSPRSPPGKPQGPPPQGGNQPQ---GPPPPPGKPQGPPPQGGNRPQGPPP 134
Score = 26.9 bits (58), Expect = 9.8
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 129 ERFRATARPPGERTGA---GAGEPRARGGQEFPSHTRSNRTPQNGDGPRSPPP 178
++ R+ PPG+ G G +P+ G P PQ G P+ PPP
Sbjct: 146 DKSRSPRSPPGKPQGPPPQGGNQPQ---GPPPPPGKPQGPPPQGGKKPQGPPP 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,007,550
Number of Sequences: 37866
Number of extensions: 455154
Number of successful extensions: 2119
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2011
Number of HSP's gapped (non-prelim): 168
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.