Guide to the Human Genome
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Name: LOC100290856 Sequence: fasta or formatted (282aa) NCBI GI: 239747453
Description:

PREDICTED: hypothetical protein XP_002347537

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         26           2
 C cysteine            5.0         14           2
 D aspartate           3.9         11           1
 E glutamate           6.0         17           3
 F phenylalanine       2.1          6           1
 G glycine            11.3         32           2
 H histidine           3.5         10           2
 I isoleucine          0.4          1           1
 K lysine              1.8          5           1
 L leucine             7.1         20           4
 M methionine          2.1          6           2
 N asparagine          0.7          2           1
 P proline            10.3         29           4
 Q glutamine           7.4         21           1
 R arginine            9.6         27           2
 S serine              9.2         26           2
 T threonine           4.3         12           1
 V valine              3.9         11           1
 W tryptophan          2.1          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347537 
LOC100292753          1.000   PREDICTED: hypothetical protein 
LOC100289061          1.000   PREDICTED: hypothetical protein XP_002342174 
SNX26                 0.021   sorting nexin 26 
NKX6-2                0.017   NK6 transcription factor related, locus 2 
MYOC                  0.016   myocilin 
KANK4                 0.014   ankyrin repeat domain 38 
RSPO1                 0.014   R-spondin1 
GGT5                  0.014   gamma-glutamyltransferase 5 isoform c 
GGT5                  0.014   gamma-glutamyltransferase 5 isoform b 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
TSC22D4               0.014   TSC22 domain family, member 4 
LOC729983             0.012   PREDICTED: hypothetical protein 
LOC100292677          0.012   PREDICTED: hypothetical protein 
BICC1                 0.012   bicaudal C homolog 1 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
LOC729991-MEF2B       0.012   myocyte enhancer factor 2B isoform b 
LOC100293662          0.012   PREDICTED: hypothetical protein 
SRRM2                 0.012   splicing coactivator subunit SRm300 
LOC100289444          0.010   PREDICTED: hypothetical protein 
LOC100289444          0.010   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.010   PREDICTED: hypothetical protein 
VSX1                  0.010   visual system homeobox 1 isoform b 
VSX1                  0.010   visual system homeobox 1 isoform a 
LOC100293573          0.009   PREDICTED: hypothetical protein 
LOC100292733          0.009   PREDICTED: similar to predicted protein 
LOC100290236          0.009   PREDICTED: hypothetical protein XP_002348273 
LOC100294352          0.009   PREDICTED: similar to predicted protein 
LOC100287598          0.009   PREDICTED: hypothetical protein XP_002343488 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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