Guide to the Human Genome
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Name: IGHMBP2 Sequence: fasta or formatted (993aa) NCBI GI: 119392094
Description:

immunoglobulin mu binding protein 2

Referenced in:

Replication Proteins
RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         99           3
 C cysteine            1.6         16           2
 D aspartate           4.3         43           2
 E glutamate           7.5         74           3
 F phenylalanine       2.6         26           2
 G glycine             6.5         65           2
 H histidine           3.0         30           2
 I isoleucine          3.3         33           2
 K lysine              5.7         57           5
 L leucine            11.2        111           3
 M methionine          0.9          9           1
 N asparagine          2.6         26           2
 P proline             5.1         51           2
 Q glutamine           5.7         57           2
 R arginine            8.0         79           2
 S serine              8.0         79           2
 T threonine           5.2         52           3
 V valine              6.7         67           3
 W tryptophan          0.3          3           1
 Y tyrosine            1.6         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin mu binding protein 2 
UPF1                  0.082   regulator of nonsense transcripts 1 
DNA2                  0.076   DNA replication helicase 2 homolog 
SETX                  0.065   senataxin 
MOV10L1               0.051   MOV10-like 1 
MOV10                 0.047   Mov10, Moloney leukemia virus 10, homolog 
MOV10                 0.047   Mov10, Moloney leukemia virus 10, homolog 
PRIC285               0.047   PPAR-alpha interacting complex protein 285 isoform ...
PRIC285               0.047   PPAR-alpha interacting complex protein 285 isoform ...
HELZ                  0.032   helicase with zinc finger domain 
ZNFX1                 0.031   zinc finger, NFX1-type containing 1 
AQR                   0.024   aquarius 
YTHDC2                0.009   YTH domain containing 2 
TULP1                 0.009   tubby like protein 1 
SRRM1                 0.009   serine/arginine repetitive matrix 1 
PRR12                 0.009   proline rich 12 
RANBP3                0.009   RAN binding protein 3 isoform RANBP3-a 
SFPQ                  0.008   splicing factor proline/glutamine rich (polypyrimidin...
ZFAND6                0.008   zinc finger, AN1-type domain 6 
DHX16                 0.008   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
LOC100129786          0.008   PREDICTED: hypothetical protein LOC100129786 
LOC100129786          0.008   PREDICTED: hypothetical protein LOC100129786 
LOC100129786          0.008   PREDICTED: hypothetical protein LOC100129786 
CDGAP                 0.008   Cdc42 GTPase-activating protein 
SHANK1                0.008   SH3 and multiple ankyrin repeat domains 1 
GPATCH1               0.008   G patch domain containing 1 
RANBP3                0.007   RAN binding protein 3 isoform RANBP3-d 
EHBP1L1               0.007   tangerin 
DHX57                 0.007   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
SFRS18                0.007   splicing factor, arginine/serine-rich 130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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