Guide to the Human Genome
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Name: LOC100294352 Sequence: fasta or formatted (291aa) NCBI GI: 239751001
Description:

PREDICTED: similar to predicted protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4         10           1
 C cysteine            5.2         15           1
 D aspartate           6.5         19           1
 E glutamate           7.6         22           2
 F phenylalanine       1.7          5           1
 G glycine             3.1          9           2
 H histidine           5.5         16           1
 I isoleucine          0.7          2           1
 K lysine              1.4          4           1
 L leucine             4.5         13           2
 M methionine          1.4          4           1
 N asparagine          2.1          6           1
 P proline             8.9         26           3
 Q glutamine           6.2         18           1
 R arginine           23.4         68           2
 S serine              3.1          9           1
 T threonine           8.2         24           2
 V valine              2.7          8           1
 W tryptophan          4.1         12           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to predicted protein 
LOC100292733          1.000   PREDICTED: similar to predicted protein 
LOC100287598          0.315   PREDICTED: hypothetical protein XP_002343488 
SRRM2                 0.070   splicing coactivator subunit SRm300 
LOC727832             0.043   golgi autoantigen, golgin subfamily a-like 
BUD13                 0.035   BUD13 homolog isoform 1 
TCHH                  0.033   trichohyalin 
LOC100130174          0.027   PREDICTED: hypothetical protein 
LOC100130174          0.027   PREDICTED: hypothetical protein 
LOC100130174          0.027   PREDICTED: hypothetical protein 
LOC440243             0.025   PREDICTED: Putative golgin subfamily A member 6-lik...
BUD13                 0.025   BUD13 homolog isoform 2 
CDC2L1                0.025   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.025   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC100131202          0.025   PREDICTED: hypothetical protein 
CDC2L1                0.024   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.024   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC100286959          0.022   PREDICTED: hypothetical protein XP_002343921 
LOC283767             0.022   golgi autoantigen, golgin subfamily a-like 
LOC100292293          0.022   PREDICTED: similar to apopolysialoglycoprotein [Hom...
CDC2L1                0.022   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L2                0.019   cell division cycle 2-like 2 isoform 1 
CDC2L2                0.017   cell division cycle 2-like 2 isoform 4 
ZC3H13                0.017   zinc finger CCCH-type containing 13 
LOC100133599          0.016   PREDICTED: hypothetical protein 
GPX4                  0.016   glutathione peroxidase 4 isoform C precursor 
LOC283685             0.014   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PRPF4B                0.013   serine/threonine-protein kinase PRP4K 
PHRF1                 0.013   PHD and ring finger domains 1 
ACIN1                 0.013   apoptotic chromatin condensation inducer 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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