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Search of human proteins with 239745331
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745331 PREDICTED: similar to FLJ00402 protein [Homo
sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750937 PREDICTED: similar to FLJ00402 protein [Homo sapiens] 359 e-100
gi|239745331 PREDICTED: similar to FLJ00402 protein [Homo sapiens] 359 e-100
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-05
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 39 0.002
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 38 0.003
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
gi|34304381 inversin isoform a [Homo sapiens] 38 0.005
gi|34304379 inversin isoform b [Homo sapiens] 38 0.005
gi|163965366 nascent polypeptide-associated complex alpha subuni... 38 0.005
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 37 0.006
gi|241982780 programmed cell death 6 interacting protein isoform... 36 0.013
gi|22027538 programmed cell death 6 interacting protein isoform ... 36 0.013
gi|146134388 YLP motif containing 1 [Homo sapiens] 35 0.029
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.038
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.038
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 35 0.038
gi|55750053 atrophin-1 [Homo sapiens] 35 0.038
gi|55750041 atrophin-1 [Homo sapiens] 35 0.038
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens] 34 0.050
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 34 0.050
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 34 0.066
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 34 0.066
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 33 0.086
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 33 0.086
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 33 0.086
gi|81174549 hypothetical protein LOC84792 [Homo sapiens] 33 0.086
gi|154146199 sal-like 3 [Homo sapiens] 33 0.086
gi|169162422 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 33 0.11
gi|4506835 small inducible cytokine A21 precursor [Homo sapiens] 33 0.15
>gi|239750937 PREDICTED: similar to FLJ00402 protein [Homo sapiens]
Length = 166
Score = 359 bits (921), Expect = e-100
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT 60
MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT
Sbjct: 1 MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT 60
Query: 61 LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120
LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP
Sbjct: 61 LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120
Query: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 166
GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT
Sbjct: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 166
>gi|239745331 PREDICTED: similar to FLJ00402 protein [Homo sapiens]
Length = 166
Score = 359 bits (921), Expect = e-100
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT 60
MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT
Sbjct: 1 MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT 60
Query: 61 LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120
LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP
Sbjct: 61 LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120
Query: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 166
GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT
Sbjct: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 166
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 44.3 bits (103), Expect = 5e-05
Identities = 46/145 (31%), Positives = 53/145 (36%), Gaps = 30/145 (20%)
Query: 21 VGEETVPGVRVSLVRT---MPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWGRFSHSHS 77
VG P V SL R RCHC LP PP L P L + PP S + S
Sbjct: 151 VGSCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASPPRLAAPLAGSRAPS 210
Query: 78 QTPAPRIWAQGPRSRDAGRG-PAPK--GRG------------------GRGSACCLPWGR 116
+P PR + AG G P P+ RG GR C L G
Sbjct: 211 LSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCAL--GS 268
Query: 117 SEVPGTPVRVPAA----AAREWAKR 137
+P P A AAR+W KR
Sbjct: 269 PPIPAGPAAPGRAGERRAARQWRKR 293
Score = 30.4 bits (67), Expect = 0.73
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 79 TPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPV-RVPAAAAREW 134
TP PR A G P P+G G A C P R+ P P + P AREW
Sbjct: 8 TPHPRTPAPGCPEV----APQPEGTDAPGPAVCSPTARAPPPILPAPQRPPTRAREW 60
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 92 RDAGRGPAPKGRGGRGSACCLPW-GRSEVPGTPVRVPAAAAREWAKREHA 140
R+A GPAP RGS P R P + + PAAAAR R+ +
Sbjct: 93 REASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRS 142
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/77 (41%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 46 PILPNPPSLPPSLPTL--IPPPFLL---WGRFSHSHSQTPAPRIWAQGPRSRDAGR-GPA 99
P LP PP PP LP L IPPP G H H+ P P GP+ GR G A
Sbjct: 1288 PSLPPPPQQPPPLPQLGSIPPPPASAPPVGPHRHFHAHGPVP-----GPQHYTLGRPGRA 1342
Query: 100 PKGRGGRGSACCLPWGR 116
P+ RG G P GR
Sbjct: 1343 PR-RGAGGHPQFAPHGR 1358
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 38.1 bits (87), Expect = 0.003
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 76 HSQTPAPRIWAQGPRSRDAGRGPAPKGRGGR---------GSACCLPWGRSEVPGTPVRV 126
HS P PR Q ++R G GP+ G GR G+ LP G S +P P +
Sbjct: 96 HSWAPRPR---QASQTRGGGGGPSLPGPAGRPSGRSRSRVGARGRLPSGGSHLPQPPRSL 152
Query: 127 PAAAAREWAKREHACISKKPARSLDFP 153
AA+A + RE +P + FP
Sbjct: 153 AAASAWQAVARELGLSGPRPTEAPPFP 179
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 38.1 bits (87), Expect = 0.003
Identities = 49/172 (28%), Positives = 59/172 (34%), Gaps = 47/172 (27%)
Query: 30 RVSLVRTMPSRCHCHSPILPNPP-----------SLP------------------PSLPT 60
R SL +P +CH H P PP S P P LP
Sbjct: 160 RASLALGLPIQCHRHISTEPPPPPPAAPATGSAQSRPRPAPARAPLIAPGAHQSAPPLPV 219
Query: 61 L--IPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGR--GGRGSACCLP--- 113
L +P P L R + + AP G +S + RGP P+ + G R A C P
Sbjct: 220 LGRLPAPLPLQLRAGGASTGLAAPSPGRGGKQSEISFRGPGPRAQHPGCRLRAGCEPSCG 279
Query: 114 -WGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPST 164
GR P R P AA + PA F AL PR P T
Sbjct: 280 RLGRGYQQRLPSRSPHAAP----------AAPAPALRSSFMFLALFPRKPGT 321
>gi|34304381 inversin isoform a [Homo sapiens]
Length = 1065
Score = 37.7 bits (86), Expect = 0.005
Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 52 PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACC 111
P P LP+ P R S + S+ P AQGP RD+ P G G A
Sbjct: 620 PQALPCLPSTQDVP----SRQSRAPSKQPPAGNVAQGPEPRDSRGSPG----GSLGGALQ 671
Query: 112 LPWG-RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPS 163
S++ GT R P ARE +K + AC+ +P D + HP PS
Sbjct: 672 KEQHVSSDLQGTNSRRPNETAREHSKGQSACVHFRPNEGSD---GSRHPGVPS 721
>gi|34304379 inversin isoform b [Homo sapiens]
Length = 895
Score = 37.7 bits (86), Expect = 0.005
Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 52 PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACC 111
P P LP+ P R S + S+ P AQGP RD+ P G G A
Sbjct: 620 PQALPCLPSTQDVP----SRQSRAPSKQPPAGNVAQGPEPRDSRGSPG----GSLGGALQ 671
Query: 112 LPWG-RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPS 163
S++ GT R P ARE +K + AC+ +P D + HP PS
Sbjct: 672 KEQHVSSDLQGTNSRRPNETAREHSKGQSACVHFRPNEGSD---GSRHPGVPS 721
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 37.7 bits (86), Expect = 0.005
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 45 SPILPNPPSLPPS---LPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPK 101
+P+ P +LPP P+++ PF G + + Q PA + + P+ A PAPK
Sbjct: 871 TPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARAT--PAPK 928
Query: 102 GRGGRGSACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKP 146
G S P + P +P PA + +WA A P
Sbjct: 929 GIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSP 973
Score = 28.9 bits (63), Expect = 2.1
Identities = 40/163 (24%), Positives = 54/163 (33%), Gaps = 17/163 (10%)
Query: 8 STPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIP---- 63
+TP P P P + G + PS +P PPS P P P
Sbjct: 978 ATPSPKGAPTPPAATPPSPKGGPAT-----PSPKGAPTPPAVTPPS-PKGSPAATPFPKG 1031
Query: 64 ---PPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120
PP S + TP P+ G + A P+PKG S P + P
Sbjct: 1032 ASTPPAATPPSPKGSPAATPLPK----GAPTTPAATLPSPKGGPATPSLKGAPTPPAATP 1087
Query: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPS 163
+P PA + + A A P L P P +P+
Sbjct: 1088 PSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPA 1130
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 37.4 bits (85), Expect = 0.006
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 46 PILPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGG 105
P P+PP+ P + T + PP R + PAP W + GP G GG
Sbjct: 1025 PGFPSPPAPPAAAATAVGPPLC---RLAFEDESPPAPARWPRSDPESQPLLGPGAGGAGG 1081
Query: 106 RGSA 109
G A
Sbjct: 1082 TGGA 1085
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 36.2 bits (82), Expect = 0.013
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 23 EETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSL---PTLIPPPFLLWGRFSHSHSQT 79
E + P + ++ P+ H +P P P ++PP+ P PPP L R + + +
Sbjct: 721 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPS 780
Query: 80 PAPRIWAQGPRSRDAGRGPAPKGRG 104
P A S+ G P P+ +G
Sbjct: 781 PVGAGTAAPAPSQTPGSAPPPQAQG 805
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 36.2 bits (82), Expect = 0.013
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 23 EETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSL---PTLIPPPFLLWGRFSHSHSQT 79
E + P + ++ P+ H +P P P ++PP+ P PPP L R + + +
Sbjct: 716 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPS 775
Query: 80 PAPRIWAQGPRSRDAGRGPAPKGRG 104
P A S+ G P P+ +G
Sbjct: 776 PVGAGTAAPAPSQTPGSAPPPQAQG 800
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 35.0 bits (79), Expect = 0.029
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 6 YSSTPLPLDYPKQPEVGEETVPGVRV-SLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPP 64
YS P PL P + P V +L T+P P +P PP +PPSLPT +PP
Sbjct: 523 YSQMPPPLPTMPPPVLPPSLPPPVMPPALPATVPP------PGMP-PPVMPPSLPTSVPP 575
Query: 65 P 65
P
Sbjct: 576 P 576
Score = 28.1 bits (61), Expect = 3.6
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 46 PILPNPPSLPPSLPTLIPPPFL 67
P +P PP LPPSLP + PP L
Sbjct: 531 PTMP-PPVLPPSLPPPVMPPAL 551
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.038
Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 34/181 (18%)
Query: 10 PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLI-----PP 64
PL L+ P P + P ++ + SP +P PP P P L PP
Sbjct: 175 PLLLEPPPPPSMAPPPPP-----VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229
Query: 65 PFLLWGRFSHSHSQTPAPRIWAQGP------------RSRDAGRGPAPKGRGG-RGSAC- 110
P + + T R++ G R +A R P+ +GSA
Sbjct: 230 PVPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289
Query: 111 -------CLPWGRSEVPGTPVR---VPAAAAREWAKREHACISKKPARSLDFPVFALHPR 160
P P TPVR +P A+E ++E K P+R P F + P
Sbjct: 290 PNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPA 349
Query: 161 S 161
S
Sbjct: 350 S 350
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.038
Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 34/181 (18%)
Query: 10 PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLI-----PP 64
PL L+ P P + P ++ + SP +P PP P P L PP
Sbjct: 175 PLLLEPPPPPSMAPPPPP-----VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229
Query: 65 PFLLWGRFSHSHSQTPAPRIWAQGP------------RSRDAGRGPAPKGRGG-RGSAC- 110
P + + T R++ G R +A R P+ +GSA
Sbjct: 230 PVPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289
Query: 111 -------CLPWGRSEVPGTPVR---VPAAAAREWAKREHACISKKPARSLDFPVFALHPR 160
P P TPVR +P A+E ++E K P+R P F + P
Sbjct: 290 PNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPA 349
Query: 161 S 161
S
Sbjct: 350 S 350
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.038
Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 34/181 (18%)
Query: 10 PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLI-----PP 64
PL L+ P P + P ++ + SP +P PP P P L PP
Sbjct: 175 PLLLEPPPPPSMAPPPPP-----VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229
Query: 65 PFLLWGRFSHSHSQTPAPRIWAQGP------------RSRDAGRGPAPKGRGG-RGSAC- 110
P + + T R++ G R +A R P+ +GSA
Sbjct: 230 PVPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289
Query: 111 -------CLPWGRSEVPGTPVR---VPAAAAREWAKREHACISKKPARSLDFPVFALHPR 160
P P TPVR +P A+E ++E K P+R P F + P
Sbjct: 290 PNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPA 349
Query: 161 S 161
S
Sbjct: 350 S 350
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 34.7 bits (78), Expect = 0.038
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 46 PILPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQ-------GPRSRDAGRGP 98
P P P + P P L PPP L R ++ S +P P + AQ P + G G
Sbjct: 286 PSAPPPANFPHVTPNLPPPPAL---RPLNNASASP-PGLGAQPLPGHLPSPHAMGQGMGG 341
Query: 99 AP----KGRGGRGSACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPV 154
P KG S LP S P P+R P +++ + + S + + FP
Sbjct: 342 LPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPA 401
Query: 155 FALHPRSP 162
P P
Sbjct: 402 SQALPSYP 409
Score = 28.1 bits (61), Expect = 3.6
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 7 SSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPIL---PNPPSLPPSLPTLIP 63
++TP P T PG R + P SP + P PP+ P LP+L P
Sbjct: 651 TATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPP 710
Query: 64 PP 65
PP
Sbjct: 711 PP 712
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 34.7 bits (78), Expect = 0.038
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 46 PILPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQ-------GPRSRDAGRGP 98
P P P + P P L PPP L R ++ S +P P + AQ P + G G
Sbjct: 286 PSAPPPANFPHVTPNLPPPPAL---RPLNNASASP-PGLGAQPLPGHLPSPHAMGQGMGG 341
Query: 99 AP----KGRGGRGSACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPV 154
P KG S LP S P P+R P +++ + + S + + FP
Sbjct: 342 LPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPA 401
Query: 155 FALHPRSP 162
P P
Sbjct: 402 SQALPSYP 409
Score = 28.1 bits (61), Expect = 3.6
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 7 SSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPIL---PNPPSLPPSLPTLIP 63
++TP P T PG R + P SP + P PP+ P LP+L P
Sbjct: 651 TATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPP 710
Query: 64 PP 65
PP
Sbjct: 711 PP 712
>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
Length = 1805
Score = 34.3 bits (77), Expect = 0.050
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 42 HCHSPILPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPK 101
H HS LP S S+ + PP +W H ++ P WA G RSR +G P
Sbjct: 1430 HSHSTTLPRDYSTLTSVSSHGLPP--IW-----EHGRSRLPLSWALGSRSRAQMKG-FPP 1481
Query: 102 GRGGR------GSACCLPWG-----RSEVPGTPVRVPAAA 130
RG R G WG + VP TP R+ +A
Sbjct: 1482 SRGPRDSIILAGRPAAPSWGPDSRLTAGVPDTPTRLVFSA 1521
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 8 STPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFL 67
STP P QP + P + + ++ P C S LP+PP++ + P P P
Sbjct: 669 STPTSAPAPTQPAPTPTSGP-IGLRILAQQPLSVTCFSLALPSPPAVAVASPAPAPAP-- 725
Query: 68 LWGRFSHSHSQTPAPRIWAQGPRS-RDAGRGPAP 100
+PAP AQ P S RD PAP
Sbjct: 726 -----------SPAP-ARAQAPASARDPAPAPAP 747
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 33.9 bits (76), Expect = 0.066
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 49 PNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGP-APKGRGGRG 107
P PP PP LP+ PPP ++P P + A R R GR P P R R
Sbjct: 432 PPPPVSPPPLPSPPPPP------AQEEQEESPPPVVPATCSRKR--GRPPLTPSQRAERE 483
Query: 108 SACCLPWGRSEVPGTP 123
+A P G S TP
Sbjct: 484 AARAGPEGTSPPTPTP 499
Score = 32.7 bits (73), Expect = 0.15
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 11 LPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWG 70
L LD P +P GEE+ P SP+LP P PP +P PP LL
Sbjct: 2335 LDLDRPGEP-AGEES------------PGPLQERSPLLPLPEDGPPQVPD-GPPDLLLES 2380
Query: 71 RFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRG 104
++ H + + + P S D APK G
Sbjct: 2381 QWHHYSGEASSSE---EEPPSPDDKENQAPKRTG 2411
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 10 PLPLDYPKQPEVGEET---VPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPP 65
P P+ P + T +P R S++R R + LP PP PP P PPP
Sbjct: 577 PAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPPPPPAPPPPPAPSPPP 635
Score = 26.9 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 96 RGPAPKGRGGRGSACCLPWGR-SEVPGTPVRVPA 128
RG AP+GRG + LP R ++V TP + PA
Sbjct: 145 RGRAPRGRGRKHKTTPLPPPRLADVAPTPPKTPA 178
Score = 26.9 bits (58), Expect = 8.0
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 48 LPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGG 105
+P P PP +P G + P P +G +S GRG +GRGG
Sbjct: 247 IPKPEPPPPVVPVKHQT-----GSWKCKEGPGPGPGTPRRGGQSSRGGRGGRGRGRGG 299
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 33.9 bits (76), Expect = 0.066
Identities = 35/118 (29%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 49 PNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGS 108
P PP LPP P + PP ++ S H PAP + P G P G
Sbjct: 275 PGPPQLPPPAPGVHPPAPVVHPPASGVH--PPAPGVHPPAPGVHPPAPGVHPPTSGVHPP 332
Query: 109 ACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFA-LHPRSPSTH 165
A P PG V PA A H PA + P A +HP++P H
Sbjct: 333 A---PGVHPPAPG--VHPPAPGVHPPAPGVH-----PPAPGVHPPPSAGVHPQAPGVH 380
Score = 28.9 bits (63), Expect = 2.1
Identities = 38/121 (31%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 49 PNPPSLPPSLPTL-IPPPFLLWG---RFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRG 104
P PPSLP P + PPP L+ G R S P P P GPAP G
Sbjct: 218 PAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPP--GGLPLPPMPPTGPAPSGPP 275
Query: 105 GRGSACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPST 164
G LP P V PA A H PA + P +HP +P
Sbjct: 276 GPPQ---LP-----PPAPGVHPPAPVVHPPASGVH-----PPAPGVHPPAPGVHPPAPGV 322
Query: 165 H 165
H
Sbjct: 323 H 323
Score = 28.1 bits (61), Expect = 3.6
Identities = 43/162 (26%), Positives = 51/162 (31%), Gaps = 27/162 (16%)
Query: 10 PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIP-PPFLL 68
P P P P PGV+ R P + P P P SLPP P +P PP
Sbjct: 218 PAPPSLPAGP-------PGVK----RPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPP 266
Query: 69 WGRFSHS-----HSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTP 123
G PAP + P G P G A P PG
Sbjct: 267 TGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPA---PGVHPPAPG-- 321
Query: 124 VRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTH 165
V P + A H PA + P +HP +P H
Sbjct: 322 VHPPTSGVHPPAPGVH-----PPAPGVHPPAPGVHPPAPGVH 358
Score = 28.1 bits (61), Expect = 3.6
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 10 PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSP----------ILPNPPSLPPSLP 59
P P +P PGV + P H P + P PP + PS P
Sbjct: 360 PAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAP 419
Query: 60 TLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAP 100
+ P P + H TP P + S G P P
Sbjct: 420 GVHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPP 460
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 33.5 bits (75), Expect = 0.086
Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 44 HSPILPNP----PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPA 99
H P P P P LPP+ P PP L S Q R A+ R P
Sbjct: 39 HPPSSPPPLHITPVLPPTFPGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLR-----PP 93
Query: 100 PKGRGGRGSACCLPWG--RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFA 156
+ RGG C P G S PG +P+AAA A++ C RS++ P A
Sbjct: 94 WEVRGGARGPCSAPVGSRASSGPG----LPSAAAARPARKTLTC----QPRSIESPATA 144
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 79 TPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAA 130
TP PR R R G G GRGGR +A + + R AAA
Sbjct: 241 TPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAASSSAAARGAAAA 292
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 33.5 bits (75), Expect = 0.086
Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 44 HSPILPNP----PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPA 99
H P P P P LPP+ P PP L S Q R A+ R P
Sbjct: 57 HPPSSPPPLHITPVLPPTFPGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLR-----PP 111
Query: 100 PKGRGGRGSACCLPWG--RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFA 156
+ RGG C P G S PG +P+AAA A++ C RS++ P A
Sbjct: 112 WEVRGGARGPCSAPVGSRASSGPG----LPSAAAARPARKTLTC----QPRSIESPATA 162
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 79 TPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAA 130
TP PR R R G G GRGGR +A + + R AAA
Sbjct: 259 TPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAASSSAAARGAAAA 310
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 33.5 bits (75), Expect = 0.086
Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 44 HSPILPNP----PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPA 99
H P P P P LPP+ P PP L S Q R A+ R P
Sbjct: 57 HPPSSPPPLHITPVLPPTFPGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLR-----PP 111
Query: 100 PKGRGGRGSACCLPWG--RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFA 156
+ RGG C P G S PG +P+AAA A++ C RS++ P A
Sbjct: 112 WEVRGGARGPCSAPVGSRASSGPG----LPSAAAARPARKTLTC----QPRSIESPATA 162
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 79 TPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAA 130
TP PR R R G G GRGGR +A + + R AAA
Sbjct: 259 TPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAASSSAAARGAAAA 310
>gi|81174549 hypothetical protein LOC84792 [Homo sapiens]
Length = 259
Score = 33.5 bits (75), Expect = 0.086
Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 3 KREYSSTPLPLDYPK---QPEVGEETVPGVRVSLVRTMPSRC----HCHSPILP------ 49
K+ P P D P +P V + +R PS H P+LP
Sbjct: 31 KKRMPEGPWPADAPSWMNKPVVDGNSQSEALSLEMRKDPSGAGLWLHSGGPVLPYVRESV 90
Query: 50 --NPPSL--PPSLPTLIPPPFLLWGRFSHSHSQTPAPRIW-AQGPRSRDAGRGPAPKG 102
NP S P + L P P + R S S + R W GPR+ D RG PKG
Sbjct: 91 RRNPASAATPSTAVGLFPAPTECFARVSCSGVEALGRRDWLGGGPRATDGHRGQCPKG 148
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 33.5 bits (75), Expect = 0.086
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 30 RVSLVRTMPSRCHCHSPILPNPPSLPPS-LPTLIPPPFLLWGRFSHSHSQTPAPRIWAQG 88
+V+L++ P R P+ P PS LP L P + PA I G
Sbjct: 229 QVALMQRPPPRPSLSPAAAPSAPGPAPSQLPGLAALPL---------SAGAPAAAIAGSG 279
Query: 89 PRSRDAGRGPAPKGRGGRGSACCLPWGRSE--VPGTPVRVPAAAAREWAKREHACISKKP 146
P + A G P R G++ P G +E P P PA AA A + S +P
Sbjct: 280 PAAPAAFEGAQPLSRPESGAST--PGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQP 337
Query: 147 ARSLDFPVFA 156
+ P A
Sbjct: 338 QSASTPPALA 347
>gi|169162422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 33.1 bits (74), Expect = 0.11
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 25 TVP----GVRVSLVRTMPSRCH--CHSPI-----LPNPPSLPPSLPTLIPPPFLLWGRFS 73
TVP G +SL++++ SR C P + P L P L P L
Sbjct: 30 TVPEYGCGESLSLLKSLCSRTFPACQRPASSTSPCAHQPMLSPLCKPLPTPAITLLHSLK 89
Query: 74 HSHSQTP--------APRIWAQGPRSRDAGRGPAPKGRGGRGSA-CCLPWGRSEVPGTPV 124
+ S+ P AP G R R R P P+ GRG+A CLP G+S V
Sbjct: 90 YQSSKYPRLAAPGSVAPSAACAGHRRRLTRRSPRPRKSRGRGAANACLP-GKSSHQERGV 148
Query: 125 RV----PAAAARE 133
V PA +AR+
Sbjct: 149 LVGCPSPALSARD 161
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.1 bits (74), Expect = 0.11
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 36 TMPSRCHCHSPILPNPPSLP-PSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRD- 93
T P H P LP P P P PT P + G S H + P P + G RD
Sbjct: 1491 TAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDS 1550
Query: 94 AGRGPAPKGRGGR 106
AG P P R R
Sbjct: 1551 AGVSPFPPKRRER 1563
>gi|4506835 small inducible cytokine A21 precursor [Homo sapiens]
Length = 134
Score = 32.7 bits (73), Expect = 0.15
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 52 PSLPPSLPTLI------------PPPFLLWGRFSHSH-SQTPAPRIWAQGPRSRDAGRGP 98
PSL S+P ++ P LW + H +TP+P+ AQG R RG
Sbjct: 53 PSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRK---DRGA 109
Query: 99 APKGRGGRGSACCLPWGRSEVPGTP 123
+ G+ G+GS C RS+ P P
Sbjct: 110 SKTGKKGKGSKGCKRTERSQTPKGP 134
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,758,146
Number of Sequences: 37866
Number of extensions: 648468
Number of successful extensions: 4460
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 3869
Number of HSP's gapped (non-prelim): 782
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.