Guide to the Human Genome
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Search of human proteins with 239744954

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]           392   e-110
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ...   392   e-110
gi|20070107 orthodenticle homeobox 1 [Homo sapiens]                    51   7e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        48   6e-06
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            46   2e-05
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            46   2e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    46   2e-05
gi|117938759 GNAS complex locus XLas [Homo sapiens]                    45   3e-05
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    44   7e-05
gi|189181750 human immunodeficiency virus type I enhancer bindin...    44   7e-05
gi|116089331 human immunodeficiency virus type I enhancer bindin...    44   7e-05
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         44   7e-05
gi|33946327 nucleoporin 214kDa [Homo sapiens]                          44   1e-04
gi|222418647 mucin 7, secreted precursor [Homo sapiens]                44   1e-04
gi|222418649 mucin 7, secreted precursor [Homo sapiens]                44   1e-04
gi|222418645 mucin 7, secreted precursor [Homo sapiens]                44   1e-04
gi|19111150 angiomotin isoform 2 [Homo sapiens]                        44   1e-04
gi|166064029 angiomotin isoform 1 [Homo sapiens]                       44   1e-04
gi|23821044 zinc finger/RING finger 2 [Homo sapiens]                   43   1e-04
gi|7662162 ALEX2 protein [Homo sapiens]                                43   1e-04
gi|29540562 ALEX2 protein [Homo sapiens]                               43   1e-04
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    43   2e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       43   2e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       43   2e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    42   3e-04
gi|74027251 tripartite motif-containing 33 protein isoform beta ...    42   3e-04
gi|74027249 tripartite motif-containing 33 protein isoform alpha...    42   3e-04
gi|116256363 transmembrane protease, serine 13 [Homo sapiens]          42   3e-04
gi|55750053 atrophin-1 [Homo sapiens]                                  42   4e-04
gi|55750041 atrophin-1 [Homo sapiens]                                  42   4e-04

>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score =  392 bits (1008), Expect = e-110
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST 60
           MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST
Sbjct: 1   MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST 60

Query: 61  LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120
           LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA
Sbjct: 61  LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120

Query: 121 GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180
           GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP
Sbjct: 121 GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180

Query: 181 RPSSTGYGSESRSR 194
           RPSSTGYGSESRSR
Sbjct: 181 RPSSTGYGSESRSR 194


>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
           sapiens]
          Length = 194

 Score =  392 bits (1008), Expect = e-110
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST 60
           MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST
Sbjct: 1   MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST 60

Query: 61  LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120
           LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA
Sbjct: 61  LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120

Query: 121 GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180
           GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP
Sbjct: 121 GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180

Query: 181 RPSSTGYGSESRSR 194
           RPSSTGYGSESRSR
Sbjct: 181 RPSSTGYGSESRSR 194


>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
          Length = 354

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 27  SLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAA 86
           S PA++  + +RE    E    G+F+PP   SS            S S    + ++PAAA
Sbjct: 105 SRPAKKKSSPVRESSGSESS--GQFTPPAVSSSA----------SSSSSASSSSANPAAA 152

Query: 87  GGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGA 146
                 G+P       + PA    W P+S    + PAS S  E  A PS       S  A
Sbjct: 153 AAAGLGGNPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAA 212

Query: 147 AAATATA 153
            AATA A
Sbjct: 213 GAATAAA 219


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 22/170 (12%)

Query: 6    RWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEP--PPPGEFSPPGDGSSTLPG 63
            R PP     SR+++  +P   S   + P   L    Q +P  P P  FS           
Sbjct: 2408 RTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQS-------- 2459

Query: 64   GDPACLLKSCSPGLGTRSSPAAAGGGATSGSP----RVVTPEPAAPATQVSWPPSSARLL 119
                CL+   +P  G++S  + A    TS +      +  P P  P + V  PP+S    
Sbjct: 2460 ---RCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPAS---- 2512

Query: 120  AGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
             G   PS A A   P+   RS+ SS ++++++++ S  ++ S++   ++S
Sbjct: 2513 TGAQQPS-ALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 2561



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 41/186 (22%), Positives = 59/186 (31%), Gaps = 30/186 (16%)

Query: 12   SDSSRVSTLLSP----RALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
            SDS   S  + P    + +  P   P   +RE +  EP P          SS+      +
Sbjct: 2561 SDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSS 2620

Query: 68   CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQV-------SWPPSSARLLA 120
                S S    + SS +++   ++S S    +P PA P  Q          PP   R   
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSS----SPSPAKPGPQALPKPASPKKPPPGERRSR 2676

Query: 121  GPASP---------------SRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGS 165
             P  P                R      PS  D+ + SS   +     G  R+       
Sbjct: 2677 SPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRR 2736

Query: 166  VTTSCR 171
             T S R
Sbjct: 2737 ETPSPR 2742



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 17/135 (12%)

Query: 9   PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
           P P   S+     +P   S  +  PH ++   K G PP  G  + P     ++     +C
Sbjct: 821 PPPKQKSK-----TPSRQSHSSSSPHPKV---KSGTPPRQGSITSPQANEQSVTPQRRSC 872

Query: 69  LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLL--------- 119
              S  P L +R+    +  G++    +  TP   +P+   S  P    ++         
Sbjct: 873 FESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSG 932

Query: 120 AGPASPSRAEAQAWP 134
           +   SPSR  ++  P
Sbjct: 933 SSSPSPSRVTSRTTP 947



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 39  EDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVV 98
           +DK  +       SP  + SST  G +P     + +P L  R   +      T  S   V
Sbjct: 338 KDKDKKEKSATRPSPSPERSST--GPEPP----APTPLLAERHGGSPQPLATTPLSQEPV 391

Query: 99  TPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATA-GSRR 157
            P   A  T+   PP S   L   +S   +     P+   R A SS  +   A A GS R
Sbjct: 392 NPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHR 451

Query: 158 AAGSTTGSVTTSCRRA 173
              S+  S   S  RA
Sbjct: 452 EISSSPTSKNRSHGRA 467


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 57/208 (27%), Positives = 69/208 (33%), Gaps = 48/208 (23%)

Query: 27  SLPAEEPH---ARLREDKQGEPPPPGEFS------------------PPGDGSSTLPGGD 65
           S P  EP    AR       EP PPG  S                  PPG GS  +P G 
Sbjct: 133 SHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQ 192

Query: 66  P-------------------ACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPA 106
           P                   A LL S  P    R +P A    A     R     PAA  
Sbjct: 193 PEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARG 252

Query: 107 TQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSV 166
           +    PP +  LLA   S + + A++ P +  R   +S    A   AGSR     +    
Sbjct: 253 S-AQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSR---APSLSPF 308

Query: 167 TTSCR----RALLNCALPRPSSTGYGSE 190
              CR    R+     LP P S   G E
Sbjct: 309 PRRCRRRAERSPAGHGLPLPRSLSRGGE 336


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 57/208 (27%), Positives = 69/208 (33%), Gaps = 48/208 (23%)

Query: 27  SLPAEEPH---ARLREDKQGEPPPPGEFS------------------PPGDGSSTLPGGD 65
           S P  EP    AR       EP PPG  S                  PPG GS  +P G 
Sbjct: 133 SHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQ 192

Query: 66  P-------------------ACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPA 106
           P                   A LL S  P    R +P A    A     R     PAA  
Sbjct: 193 PEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARG 252

Query: 107 TQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSV 166
           +    PP +  LLA   S + + A++ P +  R   +S    A   AGSR     +    
Sbjct: 253 S-AQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSR---APSLSPF 308

Query: 167 TTSCR----RALLNCALPRPSSTGYGSE 190
              CR    R+     LP P S   G E
Sbjct: 309 PRRCRRRAERSPAGHGLPLPRSLSRGGE 336


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 43/144 (29%), Positives = 56/144 (38%), Gaps = 27/144 (18%)

Query: 43  GEPPPPGEFSPPGDGSS--------------------TLPGGDPACLL---KSCSPGLGT 79
           G  P PG   P G G++                    +L    PA LL   K  +PG   
Sbjct: 179 GPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVI 238

Query: 80  RSSP---AAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSV 136
           ++ P   AAA     + SP    P PAAPA     PP +   LA P         A P+V
Sbjct: 239 QTPPFVGAAAPPAPAAPSPPAA-PAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAV 297

Query: 137 PDRSADSSGAAAATATAGSRRAAG 160
           P  +A  +G +A  A A +  A G
Sbjct: 298 PPPAAAQNGGSAGAAPAPAPAAGG 321



 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 51/193 (26%), Positives = 65/193 (33%), Gaps = 36/193 (18%)

Query: 22  SPRALSLPAEEPHARLREDKQGEPP-------PPGEFSPPGDGSSTLPGGDPACLLKSCS 74
           +P A S PA    A         PP       PPG  + P   +  +P   PA      S
Sbjct: 251 APAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP--PPAAAQNGGS 308

Query: 75  PGLGTRSSPAAAGGGATSGSP-------------------RVVTPEPAAPATQVSWPPSS 115
            G     +PAA G    SG P                   RVV   P A  T  +  P+S
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPAS 368

Query: 116 --ARLLAGP----ASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
             A ++ GP    A PS A     P  P         AA   T    R   +TT  +  +
Sbjct: 369 TAASMVIGPTMQGALPSPAAVP--PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRAT 426

Query: 170 CRRALLNCALPRP 182
               +L   LP+P
Sbjct: 427 LTPTVLAPRLPQP 439



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 43/158 (27%), Positives = 57/158 (36%), Gaps = 25/158 (15%)

Query: 44  EPPPPGEFSPPGDGSS----------TLPGG--DPACLLKSCSPGLGTRSSPAAAGGGAT 91
           EPPP G   P G G             +P G   PA  L+    G     +P  A     
Sbjct: 88  EPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVA 147

Query: 92  SGSPRVVTPEPAAPATQVSWPPSSARLLAGPA---SPSRAEAQAWPSVPDRSADSSGAAA 148
           +G      P PA PA        +AR   GP     P        P+ P  +   +G+A 
Sbjct: 148 AGP----EPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSA- 202

Query: 149 ATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTG 186
             A   S  AA     S+  +   ALL   LP+P++ G
Sbjct: 203 --ALLNSHHAAAPAV-SLVNNGPAALL--PLPKPAAPG 235



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 63  GGDPACLLKSCSPGLGTRSSPAAA---GGGATSG----SPR--VVTPEPAAPATQVSWPP 113
           G  PA   +  +PG      PA     GGG        SPR  +V   PA PA ++  PP
Sbjct: 72  GAGPAAPAEG-APGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPP 130

Query: 114 SSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTG 164
             +     P   + A A      P   A  +G AA  A AG     G   G
Sbjct: 131 EGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG 181



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 75  PGLGTRSSPAAAGGGATSGSPRVVTPEPAA---PATQVSWPPSSARLLAGPASPSRAEAQ 131
           P     S PAA    A + +P    P PA    P    + PP++A  +  PA+     + 
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSA 309

Query: 132 AWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180
              + P  +  + G A  +   G   AA +    V     + ++  A P
Sbjct: 310 G--AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPP 356



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 72  SCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQ 131
           S SP     + PAA   GA   +P    P PA  A     P        GP SP R    
Sbjct: 64  SGSPAGAAGAGPAAPAEGAPGAAPE---PPPAGRAR----PGGGGPQRPGPPSPRRPLVP 116

Query: 132 AWPSVPDRS----ADSSGAAAATATAGSRRAAG 160
           A P+ P        + S  + A   A +  AAG
Sbjct: 117 AGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG 149


>gi|117938759 GNAS complex locus XLas [Homo sapiens]
          Length = 1037

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 45  PPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAA 104
           P  P   + P D  S     DP     +  P  G  ++PAA     +  +P       + 
Sbjct: 399 PADPDSGATPEDPDSGTAPADPDSGAFAADPDSG--AAPAAPADPDSGAAPDAPADPDSG 456

Query: 105 PATQVSWPPSSARLLAGPASPSRAEAQA---WPSVPDRSADSSGAAAATATAGSRRAAGS 161
            A      P +      PA+P+ AE +A    P+ PD  A ++ AA+AT  A  RRAA +
Sbjct: 457 AAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVRRAASA 516

Query: 162 TTGS 165
              S
Sbjct: 517 APAS 520



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 38/174 (21%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 11  PSDSSRVSTLLSPRALSLPAE--EPHARLREDKQGEPP----PPGEFSPPGDGSSTLPGG 64
           P+D    +    P + + PA   +P +    D   +P     P     P    +   P  
Sbjct: 417 PADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDSGAAPDAPADPDAGAAPEAPAA 476

Query: 65  DPACLLKSC-----SPGLGTRSSPAA-----------AGGGATSGSPRVVTPEPAAPATQ 108
             A   ++      +P  G  ++PAA           A     SG+ R +   P +P  Q
Sbjct: 477 PAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVRRAASAAPASGARRKIHLRPPSPEIQ 536

Query: 109 VSWP----PSSARLLAGPASPSRAEAQAW-PSVPDRSADSSGAAAATATAGSRR 157
            + P    P+ A    G +  SR     +   V     DSSG  +   T+G  R
Sbjct: 537 AADPPTPRPTRASAWRGKSESSRGRRVYYDEGVASSDDDSSGDESDDGTSGCLR 590


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 23/146 (15%)

Query: 47  PPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRS----SPAAAGGGATSGSPRVVTPEP 102
           PP    PP   SS+     P       SP LGT +     P A GG ++ GSP    P+ 
Sbjct: 41  PPLPAGPPSSSSSSSSSSSP-------SPPLGTHNPGGLKPPATGGLSSLGSP----PQQ 89

Query: 103 AAPATQ------VSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSR 156
            + AT       +S P  S  + +G A PS + + +  S    ++ SS +AAA A A + 
Sbjct: 90  LSAATPHGINDILSRP--SMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAA 147

Query: 157 RAAGSTTGSVTTSCRRALLNCALPRP 182
            AA S  G +    R + L+   P P
Sbjct: 148 AAASSPAGLLAGLPRFSSLSPPPPPP 173


>gi|189181750 human immunodeficiency virus type I enhancer binding
            protein 3 b [Homo sapiens]
          Length = 2405

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 19/132 (14%)

Query: 8    PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
            PP+    S      SP+  S PA EP A         P PPG    PG G   LP G P 
Sbjct: 1979 PPLARKHSLTKNDSSPQRCS-PAREPQA-------SAPSPPGLHVDPGRGMGALPCGSPR 2030

Query: 68   CLLKSCS-PGLGTRSSPAA-----AGGGATSGSPRVVTPEPAAPATQVSWPPSSAR---- 117
              L   +   LG   +P A       G    G PR       +P  Q   PP SA     
Sbjct: 2031 LQLSPLTLCPLGRELAPRAHVLSKLEGTTDPGLPRYSPTRRWSPG-QAESPPRSAPPGKW 2089

Query: 118  LLAGPASPSRAE 129
             LAGP SPS  E
Sbjct: 2090 ALAGPGSPSAGE 2101


>gi|116089331 human immunodeficiency virus type I enhancer binding
            protein 3 [Homo sapiens]
          Length = 2406

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 19/132 (14%)

Query: 8    PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
            PP+    S      SP+  S PA EP A         P PPG    PG G   LP G P 
Sbjct: 1979 PPLARKHSLTKNDSSPQRCS-PAREPQA-------SAPSPPGLHVDPGRGMGALPCGSPR 2030

Query: 68   CLLKSCS-PGLGTRSSPAA-----AGGGATSGSPRVVTPEPAAPATQVSWPPSSAR---- 117
              L   +   LG   +P A       G    G PR       +P  Q   PP SA     
Sbjct: 2031 LQLSPLTLCPLGRELAPRAHVLSKLEGTTDPGLPRYSPTRRWSPG-QAESPPRSAPPGKW 2089

Query: 118  LLAGPASPSRAE 129
             LAGP SPS  E
Sbjct: 2090 ALAGPGSPSAGE 2101


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 23/150 (15%)

Query: 22  SPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRS 81
           SPR    P   P  R R   +  PPPP                      +S SP    R 
Sbjct: 310 SPRRRPSPRRRPSPRRRTPPRRMPPPPRH-------------------RRSRSPVRRRRR 350

Query: 82  SPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWP--SVPDR 139
           S A+  G ++S S       P  P  + S PP   R L+  ASP R   +  P  + P +
Sbjct: 351 SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPK 410

Query: 140 SADSSGAAAATATAGSRRAA--GSTTGSVT 167
           +  S     +  T  SR +   G T+G VT
Sbjct: 411 TRHSPTPQQSNRTRKSRVSVSPGRTSGKVT 440



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 43/166 (25%), Positives = 57/166 (34%), Gaps = 22/166 (13%)

Query: 6   RWPPVPSDSSRV-STLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGG 64
           R+ P P    R  S    P+  + P+  P  R+       PPP    SP     S     
Sbjct: 603 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHS----PPPKQRSSPVTKRRSPSLSS 658

Query: 65  DPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPP-----SSARLL 119
                 K  SP   TR + +       S SPR     P AP T  S PP     SS+   
Sbjct: 659 KHR---KGSSPSRSTREARSPQPNKRHSPSPR-----PRAPQTSSSPPPVRRGASSSPQR 710

Query: 120 AGPASPSRAEAQAWPSVPD----RSADSSGAAAATATAGSRRAAGS 161
               SPS    +     P+    + A S    +    + SR  +GS
Sbjct: 711 RQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGS 756


>gi|33946327 nucleoporin 214kDa [Homo sapiens]
          Length = 2090

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 28/187 (14%)

Query: 9    PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
            P  S+S   ++  S  ALS  A      + + +    PP   FS PG  + T      A 
Sbjct: 1546 PAVSNSGTAASSTSLVALSAEATPATTGVPDARTEAVPPASSFSVPGQTAVT------AA 1599

Query: 69   LLKSCSP-GLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSR 127
             + S  P  + T S+P A      S +  +V P P+A A       S + + A P  P+ 
Sbjct: 1600 AISSAGPVAVETSSTPIA------SSTTSIVAPGPSAEAAAFGTVTSGSSVFAQP--PAA 1651

Query: 128  AEAQAWPSVPDRSADSSGAA-----AATATAGSRRAAGSTTGSVTTSCRRALLNCALPRP 182
            + + A+  + + +A +  A       A +TA S    G  TGS  ++        A P+ 
Sbjct: 1652 SSSSAFNQLTNNTATAPSATPVFGQVAASTAPS--LFGQQTGSTASTA------AATPQV 1703

Query: 183  SSTGYGS 189
            SS+G+ S
Sbjct: 1704 SSSGFSS 1710



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 9/162 (5%)

Query: 10   VPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACL 69
            +P  S+  S ++S    SL A +        +     PP    PP   ++ LP   P   
Sbjct: 1414 LPVTSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTVPPSA-PPPTTAATPLPTSFPTLS 1472

Query: 70   LKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP-----AAPATQVSWPPSSARLLAGPAS 124
              S      T S P +AG      +   +  +P     +A A  +     SA+L   P  
Sbjct: 1473 FGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDSEVSASAASLLEEQQSAQLPQAPPQ 1532

Query: 125  PSRAEAQAWPSVPDRSADSSGAAAATAT--AGSRRAAGSTTG 164
             S +  +  P +   +  +SG AA++ +  A S  A  +TTG
Sbjct: 1533 TSDS-VKKEPVLAQPAVSNSGTAASSTSLVALSAEATPATTG 1573



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 44/179 (24%), Positives = 64/179 (35%), Gaps = 16/179 (8%)

Query: 8    PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
            P  PS +   S   S      P   P A   + KQG      + S P   S  L  GD A
Sbjct: 1132 PATPSTAMGSSVPYSTAKTPHPVLTPVAA-NQAKQGSLINSLKPSGPTPASGQLSSGDKA 1190

Query: 68   C-------LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120
                     + S     G  S P +     T  +  ++TP P++  T       S +  +
Sbjct: 1191 SGTAKIETAVTSTPSASGQFSKPFSFSPSGTGFNFGIITPTPSSNFTAAQGATPSTKESS 1250

Query: 121  GPA--SPSRAEAQAWPSVPDRSADSSGAAAATATAG------SRRAAGSTTGSVTTSCR 171
             P   S       ++ ++P+ S  S   +A+  T G      SR  A S T   TTS +
Sbjct: 1251 QPDAFSSGGGSKPSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSK 1309



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 15/144 (10%)

Query: 3   QAERWPPVPSDSSRVSTLL-SPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTL 61
           + ER P  P  +    T   +P+ L   A    A L         PP   + P    S L
Sbjct: 423 EGERQPKSPGSTPTTPTSSQAPQKLDASAAAAPASL---------PPSSPAAPIATFSLL 473

Query: 62  PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAG 121
           P G    +    S  L + ++        +SGS          P+T    PPS A L   
Sbjct: 474 PAGGAPTVFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASL--- 530

Query: 122 PASPSRAEAQAWPSVPDRSADSSG 145
             +P+ A +   PS    S  SSG
Sbjct: 531 --APTPAASPVAPSAASFSFGSSG 552



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 79   TRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPD 138
            T++S   +G   T+  P V+      P T  +   S    +A PA+ S +    + S+P 
Sbjct: 1363 TKTSGVPSGFNFTA--PPVLGKHTEPPVTSSATTTS----VAPPAATSTSSTAVFGSLPV 1416

Query: 139  RSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSS 184
             SA SSG     +  G+  +AG T+ S  +    + +  + P P++
Sbjct: 1417 TSAGSSG---VISFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTT 1459


>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
          Length = 377

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 6/165 (3%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
           P  PS S+   T  +P   S   + P +     +    PP    + P   SS+ P    A
Sbjct: 177 PAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTA 236

Query: 68  CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP----AAPATQVSWPPSSARLLAGPA 123
                 +      SS A     A   +P   T +P    A P T  + P  SA   A P+
Sbjct: 237 APPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296

Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTT 168
           SP+  E  A P     S+ ++ A   + T  S      TT SVTT
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTSET--SAAPTHQTTTSVTT 339



 Score = 34.7 bits (78), Expect = 0.052
 Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)

Query: 39  EDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVV 98
           +D    PP P   +P    SS  P    A      +P   T++ P+++    T+ +P   
Sbjct: 163 QDTTAAPPTPSATTPAPPSSSAPPETTAA----PPTPSATTQAPPSSSAPPETTAAP--- 215

Query: 99  TPEPAAPATQVSWPPSSA---RLLAGPASPSRAEAQAWPS--VPDRSADSSGAAAATATA 153
              P  PAT    PPSS+      A P +PS        S   P+ +A     +A T   
Sbjct: 216 ---PTPPAT-TPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP 271

Query: 154 GSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
            S  A   TT +  T         + P P  T
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSPAPQET 303



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 11  PSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLL 70
           PS S++++TL  P    LP        RE+           +     ++  P   PA   
Sbjct: 117 PSASTKITTL--PNVTFLPQNATTISSREN----------VNTSSSVATLAPVNSPAPQD 164

Query: 71  KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEA 130
            + +P   + ++PA      +S +P   T  P  P+     PPSS+      A P    A
Sbjct: 165 TTAAPPTPSATTPAPP----SSSAPPETTAAPPTPSATTQAPPSSS------APPETTAA 214

Query: 131 QAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSE 190
              P     +  SS A   T  A    +A  TT +  +S          P PS+T     
Sbjct: 215 PPTPPATTPAPPSSSAPPETTAAPPTPSA--TTPAPLSSSAPPETTAVPPTPSATTLDPS 272

Query: 191 SRS 193
           S S
Sbjct: 273 SAS 275



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 6/161 (3%)

Query: 9   PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
           PV S + + +T   P   +     P +    +    PP P   +     SS  P    A 
Sbjct: 156 PVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA- 214

Query: 69  LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRA 128
                +P   T + P+++    T+ +P   TP    PA   S  P     +    S +  
Sbjct: 215 ---PPTPPATTPAPPSSSAPPETTAAPP--TPSATTPAPLSSSAPPETTAVPPTPSATTL 269

Query: 129 EAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
           +  +  + P+ +A     +A T    S  A   TT +  T+
Sbjct: 270 DPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITT 310


>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
          Length = 377

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 6/165 (3%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
           P  PS S+   T  +P   S   + P +     +    PP    + P   SS+ P    A
Sbjct: 177 PAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTA 236

Query: 68  CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP----AAPATQVSWPPSSARLLAGPA 123
                 +      SS A     A   +P   T +P    A P T  + P  SA   A P+
Sbjct: 237 APPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296

Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTT 168
           SP+  E  A P     S+ ++ A   + T  S      TT SVTT
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTSET--SAAPTHQTTTSVTT 339



 Score = 34.7 bits (78), Expect = 0.052
 Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)

Query: 39  EDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVV 98
           +D    PP P   +P    SS  P    A      +P   T++ P+++    T+ +P   
Sbjct: 163 QDTTAAPPTPSATTPAPPSSSAPPETTAA----PPTPSATTQAPPSSSAPPETTAAP--- 215

Query: 99  TPEPAAPATQVSWPPSSA---RLLAGPASPSRAEAQAWPS--VPDRSADSSGAAAATATA 153
              P  PAT    PPSS+      A P +PS        S   P+ +A     +A T   
Sbjct: 216 ---PTPPAT-TPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP 271

Query: 154 GSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
            S  A   TT +  T         + P P  T
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSPAPQET 303



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 11  PSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLL 70
           PS S++++TL  P    LP        RE+           +     ++  P   PA   
Sbjct: 117 PSASTKITTL--PNVTFLPQNATTISSREN----------VNTSSSVATLAPVNSPAPQD 164

Query: 71  KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEA 130
            + +P   + ++PA      +S +P   T  P  P+     PPSS+      A P    A
Sbjct: 165 TTAAPPTPSATTPAPP----SSSAPPETTAAPPTPSATTQAPPSSS------APPETTAA 214

Query: 131 QAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSE 190
              P     +  SS A   T  A    +A  TT +  +S          P PS+T     
Sbjct: 215 PPTPPATTPAPPSSSAPPETTAAPPTPSA--TTPAPLSSSAPPETTAVPPTPSATTLDPS 272

Query: 191 SRS 193
           S S
Sbjct: 273 SAS 275



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 6/161 (3%)

Query: 9   PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
           PV S + + +T   P   +     P +    +    PP P   +     SS  P    A 
Sbjct: 156 PVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA- 214

Query: 69  LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRA 128
                +P   T + P+++    T+ +P   TP    PA   S  P     +    S +  
Sbjct: 215 ---PPTPPATTPAPPSSSAPPETTAAPP--TPSATTPAPLSSSAPPETTAVPPTPSATTL 269

Query: 129 EAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
           +  +  + P+ +A     +A T    S  A   TT +  T+
Sbjct: 270 DPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITT 310


>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
          Length = 377

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 6/165 (3%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
           P  PS S+   T  +P   S   + P +     +    PP    + P   SS+ P    A
Sbjct: 177 PAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTA 236

Query: 68  CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP----AAPATQVSWPPSSARLLAGPA 123
                 +      SS A     A   +P   T +P    A P T  + P  SA   A P+
Sbjct: 237 APPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296

Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTT 168
           SP+  E  A P     S+ ++ A   + T  S      TT SVTT
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTSET--SAAPTHQTTTSVTT 339



 Score = 34.7 bits (78), Expect = 0.052
 Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)

Query: 39  EDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVV 98
           +D    PP P   +P    SS  P    A      +P   T++ P+++    T+ +P   
Sbjct: 163 QDTTAAPPTPSATTPAPPSSSAPPETTAA----PPTPSATTQAPPSSSAPPETTAAP--- 215

Query: 99  TPEPAAPATQVSWPPSSA---RLLAGPASPSRAEAQAWPS--VPDRSADSSGAAAATATA 153
              P  PAT    PPSS+      A P +PS        S   P+ +A     +A T   
Sbjct: 216 ---PTPPAT-TPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP 271

Query: 154 GSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
            S  A   TT +  T         + P P  T
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSPAPQET 303



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 11  PSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLL 70
           PS S++++TL  P    LP        RE+           +     ++  P   PA   
Sbjct: 117 PSASTKITTL--PNVTFLPQNATTISSREN----------VNTSSSVATLAPVNSPAPQD 164

Query: 71  KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEA 130
            + +P   + ++PA      +S +P   T  P  P+     PPSS+      A P    A
Sbjct: 165 TTAAPPTPSATTPAPP----SSSAPPETTAAPPTPSATTQAPPSSS------APPETTAA 214

Query: 131 QAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSE 190
              P     +  SS A   T  A    +A  TT +  +S          P PS+T     
Sbjct: 215 PPTPPATTPAPPSSSAPPETTAAPPTPSA--TTPAPLSSSAPPETTAVPPTPSATTLDPS 272

Query: 191 SRS 193
           S S
Sbjct: 273 SAS 275



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 6/161 (3%)

Query: 9   PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
           PV S + + +T   P   +     P +    +    PP P   +     SS  P    A 
Sbjct: 156 PVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA- 214

Query: 69  LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRA 128
                +P   T + P+++    T+ +P   TP    PA   S  P     +    S +  
Sbjct: 215 ---PPTPPATTPAPPSSSAPPETTAAPP--TPSATTPAPLSSSAPPETTAVPPTPSATTL 269

Query: 129 EAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
           +  +  + P+ +A     +A T    S  A   TT +  T+
Sbjct: 270 DPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITT 310


>gi|19111150 angiomotin isoform 2 [Homo sapiens]
          Length = 675

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 58  SSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAP--ATQVSWPPSS 115
           ++T+    P  +  + +P      SPA A   A + SP      PAA   A+  +  PS+
Sbjct: 495 TTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSA 554

Query: 116 ARLLA---GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRR 172
           A   A    PA+P+   A A   VP  +A  + A A T    S  A   T     T    
Sbjct: 555 AAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTP--- 611

Query: 173 ALLNCALPRPSSTGYG 188
           A+    +P   +TG G
Sbjct: 612 AVAQAEVPASPATGPG 627



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 78  GTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVP 137
           GT S+  AA    +  +P V     AA  T  +   ++  + A P + + A A A  + P
Sbjct: 460 GTESNKTAAVAPISVPAP-VAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAP 518

Query: 138 DRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRAL 174
                S   AAATA A S  AAG    + + +   A+
Sbjct: 519 -----SPATAAATAAAVSPAAAGQIPAAASVASAAAV 550


>gi|166064029 angiomotin isoform 1 [Homo sapiens]
          Length = 1084

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 58   SSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAP--ATQVSWPPSS 115
            ++T+    P  +  + +P      SPA A   A + SP      PAA   A+  +  PS+
Sbjct: 904  TTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSA 963

Query: 116  ARLLA---GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRR 172
            A   A    PA+P+   A A   VP  +A  + A A T    S  A   T     T    
Sbjct: 964  AAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTP--- 1020

Query: 173  ALLNCALPRPSSTGYG 188
            A+    +P   +TG G
Sbjct: 1021 AVAQAEVPASPATGPG 1036



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 78  GTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVP 137
           GT S+  AA    +  +P V     AA  T  +   ++  + A P + + A A A  + P
Sbjct: 869 GTESNKTAAVAPISVPAP-VAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAP 927

Query: 138 DRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRAL 174
                S   AAATA A S  AAG    + + +   A+
Sbjct: 928 -----SPATAAATAAAVSPAAAGQIPAAASVASAAAV 959


>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
          Length = 242

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 1/111 (0%)

Query: 80  RSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDR 139
           +S PAAA G   + S   +    +  A   +     AR  A    P++  +   PS    
Sbjct: 5   QSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGG 64

Query: 140 SADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSE 190
           +A ++ A AA A   SR + G   GSV +  R A    ++P  SS  YGS+
Sbjct: 65  AAAAAAAPAAPAAPRSR-SLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQ 114


>gi|7662162 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 45/181 (24%), Positives = 66/181 (36%), Gaps = 22/181 (12%)

Query: 21  LSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTR 80
           ++P A S  A+       ++  G    P   S  G   ++     P       +  LG  
Sbjct: 98  VAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAMASAIAPPPGV-----TEALGAA 152

Query: 81  SSPAAAGGGATSGSPR-------------VVTPEPAAPATQVSWP----PSSARLLAGPA 123
            +PA AG    + +PR             VV  E AAP      P    P+      G A
Sbjct: 153 EAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVA 212

Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPS 183
           SP+ A     P+ P  +A  +GAA +  T+GS R A     S            A+P+ +
Sbjct: 213 SPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKAT 272

Query: 184 S 184
           S
Sbjct: 273 S 273


>gi|29540562 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 45/181 (24%), Positives = 66/181 (36%), Gaps = 22/181 (12%)

Query: 21  LSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTR 80
           ++P A S  A+       ++  G    P   S  G   ++     P       +  LG  
Sbjct: 98  VAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAMASAIAPPPGV-----TEALGAA 152

Query: 81  SSPAAAGGGATSGSPR-------------VVTPEPAAPATQVSWP----PSSARLLAGPA 123
            +PA AG    + +PR             VV  E AAP      P    P+      G A
Sbjct: 153 EAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVA 212

Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPS 183
           SP+ A     P+ P  +A  +GAA +  T+GS R A     S            A+P+ +
Sbjct: 213 SPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKAT 272

Query: 184 S 184
           S
Sbjct: 273 S 273


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 55/182 (30%), Positives = 70/182 (38%), Gaps = 20/182 (10%)

Query: 15  SRVSTLLSPRALSLPAEEPHARLR--EDKQGEPPPPGEFSPPGDGSSTLPGGDP--ACLL 70
           S  + L  P   SL    P A L            P   SP G  S T P G P  A L 
Sbjct: 144 STAAALTMPSRASLTRTPPRASLTMTPSTASLTRTPPRASPTGMPSRTSPTGMPSTASLT 203

Query: 71  KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGP--ASP--- 125
           K  S    TR+   A+     +G+P   +P  + P   +S  PS+A L+  P  ASP   
Sbjct: 204 KMDSTASITRTLSRAS----PTGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGM 259

Query: 126 -SRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSS 184
            SR       S    +   S  + A+ T    RA+ S T S  +  R       LPR S 
Sbjct: 260 LSRTSLTKMDSTASITRTPSRPSTASPTGTPSRASLSMTPSTASLMR------MLPRASP 313

Query: 185 TG 186
           TG
Sbjct: 314 TG 315



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 14/147 (9%)

Query: 48  PGEFSPPGDGSSTLPGGDPACLLKSCSP------GLGTRSSPAAAGGGAT-SGSPRVVT- 99
           P   SP G  S+  P G P+    + SP      GL + +SP      A+ +G+P   + 
Sbjct: 344 PSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASPTGTPSTASL 403

Query: 100 ---PEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSR 156
              P  A+P   +S   +S   +   ASP+R   +A P+     A  +G  +  +  G++
Sbjct: 404 TRKPPRASPTGMLS--RTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQ 461

Query: 157 RAAGSTTGSVTTSCRRALLNCALPRPS 183
             A S TGS +T+      + A P  S
Sbjct: 462 STA-SPTGSPSTASPTGSPSTASPTGS 487



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 17/184 (9%)

Query: 2   AQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTL 61
           A   R PP  S +  +S   S   +   A       R    G PP     SP G  S   
Sbjct: 401 ASLTRKPPRASPTGMLSRT-SITKMDSTASPTRTPPRASPTGTPP---RASPTGTPSRAS 456

Query: 62  PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARL--L 119
           P G  +    + SP      SP+ A   + +GSP   +P  +     ++  PS A L  +
Sbjct: 457 PTGTQS----TASP----TGSPSTA---SPTGSPSTASPTGSPSRASLTRTPSRASLTKM 505

Query: 120 AGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCAL 179
              AS +R  ++A P+    +A  +G+ +     GS   A  T      S  R     +L
Sbjct: 506 ESTASITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASL 565

Query: 180 PRPS 183
             PS
Sbjct: 566 TTPS 569



 Score = 34.7 bits (78), Expect = 0.052
 Identities = 53/198 (26%), Positives = 65/198 (32%), Gaps = 24/198 (12%)

Query: 9   PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
           P     SR S   +P   SL      A L     G P        P   S T  G  P  
Sbjct: 3   PPTRTPSRASPTRTPSTASLTGTPSRASLT----GTPSTASLMGTPSRASLT--GTPPRA 56

Query: 69  LLKSCSPGLGTRSSPAAAGGGATSGSPRVV-TPEPAA--------------PATQVSWPP 113
            LK  +       SP+ A       S  +  TP  A+              P   +   P
Sbjct: 57  SLKGTTSMASLMVSPSRASLTRMQSSSLLTRTPSMASLKRMPPRASRTRTLPRASLMRRP 116

Query: 114 SSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRA 173
           S+A L     SPSRA     PS    S   S AAA T  + +         S+T +   A
Sbjct: 117 STASLTR---SPSRASLTTTPSRASLSMTPSTAAALTMPSRASLTRTPPRASLTMTPSTA 173

Query: 174 LLNCALPRPSSTGYGSES 191
            L    PR S TG  S +
Sbjct: 174 SLTRTPPRASPTGMPSRT 191



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 47/181 (25%), Positives = 61/181 (33%), Gaps = 21/181 (11%)

Query: 15  SRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTL--PGGDPACLL-- 70
           SR S   SP   SL      A       G PP       P   S T   P   P  +L  
Sbjct: 363 SRASPTGSPSTASLTGLSSTA----SPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSR 418

Query: 71  ----KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPA-TQVSWPPSSARLLAGPASP 125
               K  S    TR+ P A+  G    +    TP  A+P  TQ +  P+         SP
Sbjct: 419 TSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQSTASPTG--------SP 470

Query: 126 SRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
           S A     PS    +   S A+     + +      +T S+T +  RA         S T
Sbjct: 471 STASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASPTWTPSTASPT 530

Query: 186 G 186
           G
Sbjct: 531 G 531



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 22/146 (15%)

Query: 54  PGDGSSTLPGGDPACLLKSCSPGLGT--RSSPAAAGGGATSGSPRVVTPEPAA-----PA 106
           P   S+  P G P+    S +P   +  R  P A+  G  S +        A+     P 
Sbjct: 278 PSRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISRTPPR 337

Query: 107 TQVSWPPSSARLLAGPAS------PSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAG 160
             ++  PS A     P++      PSRA     PS    +A  +G ++  +  G+   A 
Sbjct: 338 ASITRTPSRASPTGKPSTASPTGTPSRASPTGSPS----TASLTGLSSTASPTGTPPRA- 392

Query: 161 STTGSVTTSCRRALLNCALPRPSSTG 186
           S TG+ +T    A L    PR S TG
Sbjct: 393 SPTGTPST----ASLTRKPPRASPTG 414


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 38  REDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAA----AGGGATSG 93
           R+  Q    PP +  PP  G    PG  P    +   P L  R  P      +G G  +G
Sbjct: 446 RQTSQQPAGPPAQQRPPPQGGPPQPGPGP----QRQGPPLQQRPPPQGQQHLSGLGPPAG 501

Query: 94  SP---RVVTP--EPAAPATQVSWPP-----SSARLLAGPASPSRAEAQAWPSVPDRSADS 143
           SP   R+ +P   P  PA+Q + P       S  +  GP +P  A   A PS P R A  
Sbjct: 502 SPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS-PQRQAGP 560

Query: 144 SGAAAATATAGSR--RAAGSTTG 164
             A   T+ +G    +A+G+  G
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPG 583



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 43/159 (27%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 31  EEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGA 90
           + P  + ++   G  PP G   P    S T     PA      + G G +S P A G GA
Sbjct: 483 QRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGA 542

Query: 91  TSGSPRVVTPEPAAPATQ-VSWPPSSAR--LLAGPASPSRAEAQAWPSVPDRSADSSGAA 147
               P    P PA+P+ Q  + PP + R   ++GPA P  + A                 
Sbjct: 543 ----PPAARP-PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGP 597

Query: 148 AATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTG 186
           A      S+      TG  TT           PRPS  G
Sbjct: 598 AGPTRQASQAGPVPRTGPPTTQ---------QPRPSGPG 627



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 41/177 (23%), Positives = 59/177 (33%), Gaps = 13/177 (7%)

Query: 15  SRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCS 74
           S  S    P + + P  +   R      G P  P    PP   S     G P    ++  
Sbjct: 510 SPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV 569

Query: 75  PGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVS--------WPPSSARLLAGPASPS 126
            G     +  A  GG     P    P PA P  Q S         PP++ +    P+ P 
Sbjct: 570 SGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQ--PRPSGPG 627

Query: 127 RAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPS 183
            A  +  P +  + +      A  A  G      + + S+T +    L   A PRPS
Sbjct: 628 PA-GRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFN--LPEPAPPRPS 681



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 13/75 (17%)

Query: 42  QGEPPPPGEFSP---PGDGSSTL---PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSP 95
           Q  PPPPG  SP   PG G++T     G  PA    + SPG       ++ GGG  S   
Sbjct: 29  QPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPG-------SSGGGGFFSSLS 81

Query: 96  RVVTPEPAAPATQVS 110
             V    AA A   S
Sbjct: 82  NAVKQTTAAAAATFS 96


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 38  REDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAA----AGGGATSG 93
           R+  Q    PP +  PP  G    PG  P    +   P L  R  P      +G G  +G
Sbjct: 446 RQTSQQPAGPPAQQRPPPQGGPPQPGPGP----QRQGPPLQQRPPPQGQQHLSGLGPPAG 501

Query: 94  SP---RVVTP--EPAAPATQVSWPP-----SSARLLAGPASPSRAEAQAWPSVPDRSADS 143
           SP   R+ +P   P  PA+Q + P       S  +  GP +P  A   A PS P R A  
Sbjct: 502 SPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS-PQRQAGP 560

Query: 144 SGAAAATATAGSR--RAAGSTTG 164
             A   T+ +G    +A+G+  G
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPG 583



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 43/159 (27%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 31  EEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGA 90
           + P  + ++   G  PP G   P    S T     PA      + G G +S P A G GA
Sbjct: 483 QRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGA 542

Query: 91  TSGSPRVVTPEPAAPATQ-VSWPPSSAR--LLAGPASPSRAEAQAWPSVPDRSADSSGAA 147
               P    P PA+P+ Q  + PP + R   ++GPA P  + A                 
Sbjct: 543 ----PPAARP-PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGP 597

Query: 148 AATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTG 186
           A      S+      TG  TT           PRPS  G
Sbjct: 598 AGPTRQASQAGPVPRTGPPTTQ---------QPRPSGPG 627



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 24/96 (25%), Positives = 30/96 (31%)

Query: 15  SRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCS 74
           S  S    P + + P  +   R      G P  P    PP   S     G P    ++  
Sbjct: 510 SPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV 569

Query: 75  PGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVS 110
            G     +  A  GG     P    P PA P  Q S
Sbjct: 570 SGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQAS 605



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 13/75 (17%)

Query: 42  QGEPPPPGEFSP---PGDGSSTL---PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSP 95
           Q  PPPPG  SP   PG G++T     G  PA    + SPG       ++ GGG  S   
Sbjct: 29  QPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPG-------SSGGGGFFSSLS 81

Query: 96  RVVTPEPAAPATQVS 110
             V    AA A   S
Sbjct: 82  NAVKQTTAAAAATFS 96



 Score = 31.2 bits (69), Expect = 0.58
 Identities = 29/118 (24%), Positives = 37/118 (31%), Gaps = 9/118 (7%)

Query: 30  AEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPG-LGTRSSPAAAGG 88
           A  P A  +    G  PP    +PPG      P   P        PG  G     + AG 
Sbjct: 558 AGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKP--------PGPAGPTRQASQAGP 609

Query: 89  GATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGA 146
              +G P    P P+ P       P  A+  +    P    A   P  P   A  + A
Sbjct: 610 VPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASPAQA 667


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 56/207 (27%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEF--SPPGDGSSTLPGGD 65
           PP P  S  +S L  P     P + P A      Q  P PP  F    P   S++LP   
Sbjct: 769 PPSPPASLPMSPLAKP-----PPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSP 823

Query: 66  PACLLKSCSPGLGTR--SSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPA 123
            A       P L       P +     T  +PR   P    P T VS P  +  L  GP 
Sbjct: 824 LATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR--RPPTPGPDTSVSGPRLTLALAPGPP 881

Query: 124 SPSRAEAQAWPSVPDRSADSS-----------------GAAAAT----ATAGSRRAAGST 162
            P      +  S PD +  SS                 G AAA+    A   +   A  +
Sbjct: 882 PPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWS 941

Query: 163 TGSVTTSCRRALLNCALPRPSSTGYGS 189
            G       R      LP P +TG GS
Sbjct: 942 RGPAPPLAFRGAPGAPLPWPPATGPGS 968



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 46/138 (33%), Positives = 57/138 (41%), Gaps = 20/138 (14%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEF------SPPGDGSSTL 61
           PP P  S  +S L +P   +  A   H  L+      P PP +       SPP   S+T 
Sbjct: 633 PPSPPASPPLSPLATPSPQAPNALAVHL-LQAPFSPPPSPPVQAPFSPPASPPVSPSATP 691

Query: 62  PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP-AAPATQVSWPPSSARLLA 120
           P   P  L    +P L    SP A+   + S +P    P P AAP  QV  PPS      
Sbjct: 692 PSQAPPSL---AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQV--PPSP----- 741

Query: 121 GPASPSRA-EAQAWPSVP 137
            PASP  +  A   P VP
Sbjct: 742 -PASPPMSPSATPPPRVP 758



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 8   PPVPSD-SSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDP 66
           PPV +  S   S  +SP A   P++ P +      Q  P PP   SPP   S+T P   P
Sbjct: 671 PPVQAPFSPPASPPVSPSATP-PSQAPPSLAAPPLQVPPSPPA--SPPMSPSATPPPQAP 727

Query: 67  ACLLKSCSPGLGTRSSPAAAGGGATSGSPRV-VTPEPAAPATQVSWPPSSARLLAGPASP 125
             L    +P L    SP A+   + S +P   V P  AAP  QV  PPS    L  P SP
Sbjct: 728 PPL---AAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQV--PPSPPASL--PMSP 780

Query: 126 -SRAEAQAWPSV 136
            ++   QA P++
Sbjct: 781 LAKPPPQAPPAL 792



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 46/190 (24%), Positives = 70/190 (36%), Gaps = 31/190 (16%)

Query: 24  RALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSS-------TLPG-----GDPACLLK 71
           R+    +  P +R     +GE  PP + + PG  SS       T PG     G      +
Sbjct: 81  RSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEE 140

Query: 72  SCSPGLGT---RSSPAAAGGGATSGSPRVVTPEPA------APATQVSWPPSSARLLAGP 122
           + + G  T   + S  +AG    +  P   TP PA      A  T+V  P  +    A P
Sbjct: 141 TVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPS--ARP 198

Query: 123 ASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRP 182
             P+          P +S  S+   + T  + + R   S  G +     R+L + A P  
Sbjct: 199 RPPTEG--------PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLS 250

Query: 183 SSTGYGSESR 192
           S    G  +R
Sbjct: 251 SPARSGPSAR 260



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 44/178 (24%), Positives = 62/178 (34%), Gaps = 34/178 (19%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
           P  PS +    +  +   + LP   P AR R   +G   P    S   + S+T P   PA
Sbjct: 169 PGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG---PRKSVSSASEHSTTEPS--PA 223

Query: 68  CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSR 127
                       R  P+A GG             PA+ +   S  P S+   +GP++   
Sbjct: 224 A-----------RRRPSAGGG----------LQRPASRSLSSSATPLSSPARSGPSARGT 262

Query: 128 AEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
             A A PS P        A         R+ A    G +++S        A P PS T
Sbjct: 263 PRAPAHPSQP--KPKGLQALRPPQVTPPRKDAAPALGPLSSS------PLATPSPSGT 312



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPP----PPGEFSPPGDGSSTLPG 63
           PP PS    + TL SP A   P++ P +      Q  P     PP +  P    S +L  
Sbjct: 345 PPSPSAPPSLQTLPSPPATP-PSQAPPSMTTPPMQAPPSLQTIPPIQV-PHSLTSPSLQA 402

Query: 64  GDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARL---LA 120
                 L S        S    A     + SPR       +P+   S PP S  L   L+
Sbjct: 403 PPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLS 462

Query: 121 GPASP 125
            PASP
Sbjct: 463 LPASP 467



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 35/115 (30%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 29  PAEEPHARLREDKQGEPPPPGEFSPPGD-GSSTLPGGDPACLLKSCSPGLGT-RSSPAAA 86
           P   P AR     +G P  P   S P   G   L         K  +P LG   SSP A 
Sbjct: 248 PLSSP-ARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT 306

Query: 87  GGGATSGSPRVVTPEPAAPATQVSWPPS---SARLLAGPASPSRAEA-QAWPSVP 137
              + + +  V  P+ AA     + PPS   +  L   P SPS   + Q  PS P
Sbjct: 307 PSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPP 361



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 40/140 (28%), Positives = 53/140 (37%), Gaps = 30/140 (21%)

Query: 8   PPVPSD-SSRVSTLLSPRAL-------SLPAEEPHARLRE------DKQGEPPPPGEFSP 53
           PP+ +  S  VS L SP  +       SL +  P A L        + Q    PP   +P
Sbjct: 467 PPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTP 526

Query: 54  PGDGSSTLPGGDPACLLKSCSPG-LGTRSSPAAAGGGATSGSPR----------VVTPEP 102
           P   S T P   P   L S +P  L T S+P       T   P           + TP P
Sbjct: 527 PA--SLTTP---PLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPP 581

Query: 103 AAPATQVSWPPSSARLLAGP 122
             P++  + PP +   LA P
Sbjct: 582 ETPSSIATPPPQAPPALASP 601



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 45   PPPPGEFSPPGDGSSTLPGGD--------PACLLKSCSPGLGTRSSPAAAGGGATSGSPR 96
            P PP       DG  T+   +        P  L    SPG     + A AG GA+S SP+
Sbjct: 959  PWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPK 1018

Query: 97   VV----TPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATAT 152
                   P  A  A+ V    S   LLA  A  +   +   P   +    + GA AA + 
Sbjct: 1019 QARLGELPLGALQASVVQHLLSRTLLLAA-AEGAAGGSGGGPGGAEGGGVTGGARAALSD 1077

Query: 153  A 153
            A
Sbjct: 1078 A 1078



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 32/117 (27%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 45  PP--PPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP 102
           PP  PP   SPP  G  + P    A       P L      A     A+     + TP P
Sbjct: 591 PPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSP 650

Query: 103 AAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAA 159
            AP         +  LL  P SP  +     P  P  S   S +A   + A    AA
Sbjct: 651 QAPNA------LAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAA 701



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 38/122 (31%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 21  LSPRALSLPAEEPHARLREDKQGEPPPPGE--FSPPGDGSSTLPGGDPACLLKSC----- 73
           LSP A   P   P   L    Q  P PP     SP    S   P      LL++      
Sbjct: 611 LSPLATPPPQAPPXLAL-PPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPP 669

Query: 74  SPGLGTRSSPAAAGGGATSGSP-RVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQA 132
           SP +    SP A+   + S +P     P  AAP  QV  PPS       PASP  + +  
Sbjct: 670 SPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQV--PPSP------PASPPMSPSAT 721

Query: 133 WP 134
            P
Sbjct: 722 PP 723


>gi|74027251 tripartite motif-containing 33 protein isoform beta
           [Homo sapiens]
          Length = 1110

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 84  AAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPS-RAEAQAWPSVPDRSAD 142
           A +GGG +  +P  VT   A PA Q + PP +A L+        RA A+   + PD    
Sbjct: 10  AESGGGGSGSAP--VTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPD---- 63

Query: 143 SSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSS 184
                 A A++GS +AA S   SV T      ++   P P+S
Sbjct: 64  --DGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAPAPAS 103


>gi|74027249 tripartite motif-containing 33 protein isoform alpha
           [Homo sapiens]
          Length = 1127

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 84  AAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPS-RAEAQAWPSVPDRSAD 142
           A +GGG +  +P  VT   A PA Q + PP +A L+        RA A+   + PD    
Sbjct: 10  AESGGGGSGSAP--VTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPD---- 63

Query: 143 SSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSS 184
                 A A++GS +AA S   SV T      ++   P P+S
Sbjct: 64  --DGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAPAPAS 103


>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
          Length = 567

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 20/145 (13%)

Query: 37  LREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPR 96
           +  D  G   P    S     +   P G P        PG   R+SPA A       SP 
Sbjct: 1   MERDSHGNASPARTPSAGASPAQASPAGTP--------PG---RASPAQAS--PAQASPA 47

Query: 97  VVTPEPAAPATQVSWPPSSARLLAGPASPSRAE-AQAWPSVPDRSADSSGAAAATATAGS 155
              P  A+PA          R   G ASP++A  AQA P      A +S A A+ + + S
Sbjct: 48  GTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASP------ARASPALASLSRSSS 101

Query: 156 RRAAGSTTGSVTTSCRRALLNCALP 180
            R++ + + SVTTS  R  L  A P
Sbjct: 102 GRSSSARSASVTTSPTRVYLVRATP 126



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 99  TPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAAT--ATAGSR 156
           TP   A   Q S P  +    A PA  S A+A    + P R++ +  + A T    A   
Sbjct: 14  TPSAGASPAQAS-PAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPG 72

Query: 157 RAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSESRS 193
           RA+ +       S  RA    A    SS+G  S +RS
Sbjct: 73  RASPAQASPAQASPARASPALASLSRSSSGRSSSARS 109


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 42/140 (30%), Positives = 56/140 (40%), Gaps = 34/140 (24%)

Query: 27  SLPAEEPHARLREDKQGEPPPPG-------EFSPPGDGSSTLPGGDPACLLKSCSPGLGT 79
           +LP+  P A         PPPP          SPPG G+  LPG  P             
Sbjct: 284 NLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLP------------- 330

Query: 80  RSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDR 139
             SP A G G   G P      P    +  S PP+S+   + PA P R         P  
Sbjct: 331 --SPHAMGQG-MGGLPPGPEKGPTLAPSPHSLPPASS---SAPAPPMR--------FPYS 376

Query: 140 SADSSGAAAATATAGSRRAA 159
           S+ SS AAA+++++ S  +A
Sbjct: 377 SSSSSSAAASSSSSSSSSSA 396



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 14/118 (11%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
           P  P  S      ++P     P E P +R+ +   G PPP  +  P G G   L G    
Sbjct: 176 PRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTG-GVLSG---- 230

Query: 68  CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASP 125
                  P +G +   AA+  G  +G  +   P P  P +  S   S A     P +P
Sbjct: 231 -------PPMGPKGGGAASSVGGPNGGKQ--HPPPTTPISVSSSGASGAPPTKPPTTP 279



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 33/171 (19%)

Query: 7   WPPVPS---DSSRVSTLLSP--------RALSLPAEEPHARLRED------------KQG 43
           +PPVP+    S+ +ST+++         +  S P   P+ +                K G
Sbjct: 601 FPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPG 660

Query: 44  EPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPA 103
            PP     +PPG   ++ P G      K  SP +G    P A   G  S  P    P   
Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGT--FKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASG 718

Query: 104 AP--ATQVSWPPSSA-RLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATA 151
            P  ATQ+   P+        P  P+R+     PS P +  D    A+ +A
Sbjct: 719 PPLSATQIKQEPAEEYETPESPVPPARS-----PSPPPKVVDVPSHASQSA 764



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 45  PPPPGEFSPPGDGSSTLPGGDPAC-----LLKSCSPG---LGTRSSPAAAGGGATSGSPR 96
           PPPPG F  P +G S+      A       L+   PG   L    S  +      +G P 
Sbjct: 509 PPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPV 568

Query: 97  VVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSR 156
             +   ++  +Q S+P S      GP    +     +P VP  +  S+  +   AT  S 
Sbjct: 569 SSSSNSSSSTSQGSYPCSHPSPSQGP----QGAPYPFPPVPTVTTSSATLSTVIATVASS 624

Query: 157 RAAGST 162
            A   T
Sbjct: 625 PAGYKT 630


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 42/140 (30%), Positives = 56/140 (40%), Gaps = 34/140 (24%)

Query: 27  SLPAEEPHARLREDKQGEPPPPG-------EFSPPGDGSSTLPGGDPACLLKSCSPGLGT 79
           +LP+  P A         PPPP          SPPG G+  LPG  P             
Sbjct: 284 NLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLP------------- 330

Query: 80  RSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDR 139
             SP A G G   G P      P    +  S PP+S+   + PA P R         P  
Sbjct: 331 --SPHAMGQG-MGGLPPGPEKGPTLAPSPHSLPPASS---SAPAPPMR--------FPYS 376

Query: 140 SADSSGAAAATATAGSRRAA 159
           S+ SS AAA+++++ S  +A
Sbjct: 377 SSSSSSAAASSSSSSSSSSA 396



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 14/118 (11%)

Query: 8   PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
           P  P  S      ++P     P E P +R+ +   G PPP  +  P G G   L G    
Sbjct: 176 PRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTG-GVLSG---- 230

Query: 68  CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASP 125
                  P +G +   AA+  G  +G  +   P P  P +  S   S A     P +P
Sbjct: 231 -------PPMGPKGGGAASSVGGPNGGKQ--HPPPTTPISVSSSGASGAPPTKPPTTP 279



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 33/171 (19%)

Query: 7   WPPVPS---DSSRVSTLLSP--------RALSLPAEEPHARLRED------------KQG 43
           +PPVP+    S+ +ST+++         +  S P   P+ +                K G
Sbjct: 601 FPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPG 660

Query: 44  EPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPA 103
            PP     +PPG   ++ P G      K  SP +G    P A   G  S  P    P   
Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGT--FKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASG 718

Query: 104 AP--ATQVSWPPSSA-RLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATA 151
            P  ATQ+   P+        P  P+R+     PS P +  D    A+ +A
Sbjct: 719 PPLSATQIKQEPAEEYETPESPVPPARS-----PSPPPKVVDVPSHASQSA 764



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 45  PPPPGEFSPPGDGSSTLPGGDPAC-----LLKSCSPG---LGTRSSPAAAGGGATSGSPR 96
           PPPPG F  P +G S+      A       L+   PG   L    S  +      +G P 
Sbjct: 509 PPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPV 568

Query: 97  VVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSR 156
             +   ++  +Q S+P S      GP    +     +P VP  +  S+  +   AT  S 
Sbjct: 569 SSSSNSSSSTSQGSYPCSHPSPSQGP----QGAPYPFPPVPTVTTSSATLSTVIATVASS 624

Query: 157 RAAGST 162
            A   T
Sbjct: 625 PAGYKT 630


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.123    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,784,341
Number of Sequences: 37866
Number of extensions: 750926
Number of successful extensions: 9046
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 1152
Number of HSP's that attempted gapping in prelim test: 5153
Number of HSP's gapped (non-prelim): 4222
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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