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Search of human proteins with 239744417
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
(364 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 743 0.0
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 509 e-144
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 456 e-128
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 234 9e-62
gi|8393009 chromosome 11 open reading frame2 [Homo sapiens] 170 2e-42
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 107 2e-23
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 55 8e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 55 8e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 51 2e-06
gi|91208420 bassoon protein [Homo sapiens] 50 3e-06
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 50 3e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 5e-06
gi|11415052 retinoid X receptor, beta [Homo sapiens] 49 7e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 49 7e-06
gi|145199237 transcription elongation factor B polypeptide 3 bin... 49 9e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 48 1e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 3e-05
gi|19913396 smoothelin isoform b [Homo sapiens] 47 3e-05
gi|19913394 smoothelin isoform c [Homo sapiens] 47 3e-05
gi|19913398 smoothelin isoform a [Homo sapiens] 47 3e-05
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-05
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-05
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-05
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 47 4e-05
gi|188536110 leucine rich repeat neuronal 4 [Homo sapiens] 47 4e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 46 5e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 46 5e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 46 5e-05
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 46 5e-05
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 743 bits (1919), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MWRLTERRRKAHRMLKLYNGLSEGEAVGLPAGPDPLDPTDLNGAHFDPEVYLDKLPRESP 60
MWRLTERRRKAHRMLKLYNGLSEGEAVGLPAGPDPLDPTDLNGAHFDPEVYLDKLPRESP
Sbjct: 1 MWRLTERRRKAHRMLKLYNGLSEGEAVGLPAGPDPLDPTDLNGAHFDPEVYLDKLPRESP 60
Query: 61 LAQLMDSETDMVQQIRALDSDMQTLVYENYDKFIPATEMTNSIKLPPSAKSINVSGIGRP 120
LAQLMDSETDMVQQIRALDSDMQTLVYENYDKFIPATEMTNSIKLPPSAKSINVSGIGRP
Sbjct: 61 LAQLMDSETDMVQQIRALDSDMQTLVYENYDKFIPATEMTNSIKLPPSAKSINVSGIGRP 120
Query: 121 SGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNER 180
SGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNER
Sbjct: 121 SGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNER 180
Query: 181 PAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKAT 240
PAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKAT
Sbjct: 181 PAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKAT 240
Query: 241 GKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGV 300
GKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGV
Sbjct: 241 GKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGV 300
Query: 301 SDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLGCV 360
SDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLGCV
Sbjct: 301 SDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLGCV 360
Query: 361 ASTS 364
ASTS
Sbjct: 361 ASTS 364
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 509 bits (1311), Expect = e-144
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 118 GRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES 177
GRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES
Sbjct: 15 GRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES 74
Query: 178 NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS 237
NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS
Sbjct: 75 NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS 134
Query: 238 KATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDG 297
KATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDG
Sbjct: 135 KATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDG 194
Query: 298 RGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLL 357
RGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLL
Sbjct: 195 RGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLL 254
Query: 358 GCVASTS 364
GCVASTS
Sbjct: 255 GCVASTS 261
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 456 bits (1172), Expect = e-128
Identities = 249/336 (74%), Positives = 254/336 (75%), Gaps = 64/336 (19%)
Query: 14 MLKLYNGLSEGEAVGLPAGPDPLDPTDLNGAHFDPEVYLDKLPRESPLAQLMDSETDMVQ 73
MLKLYNGLSEGEAV L AG DPLDPTDLNGAHF+PEVYLDKLPRE PLAQLMDSETDMVQ
Sbjct: 1 MLKLYNGLSEGEAVRLLAGTDPLDPTDLNGAHFNPEVYLDKLPRECPLAQLMDSETDMVQ 60
Query: 74 QIRALDSDMQTLVYENYDKFIPATEMTNSIKLPPSAKSINVSGIGRPSGCNLVGAGRRCR 133
QIRALDSDMQTLVYENYDK PPSAK
Sbjct: 61 QIRALDSDMQTLVYENYDK-------------PPSAKC---------------------- 85
Query: 134 AWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSS 193
RRPGPGVSAV A GQQRAPES ERPAEE PA MPSS
Sbjct: 86 -----------------------RRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSS 122
Query: 194 APRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRRE 253
APRGPTEPA RRPSSADRPLAPGPSSSPGAGRAP AMASPSGSS+ATGKPRGRDG PRRE
Sbjct: 123 APRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRRE 182
Query: 254 EDDVTPEEKRLRLLLEEGSAQP---DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGC 310
EDDV PEEKRLRLLLE GSAQP +DGEDAPRPGRK+TGTQTGGDGRGVSD GAGV
Sbjct: 183 EDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGV--- 239
Query: 311 RGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSS 346
RGC+GRGVGAAGGSVAGPGLKLV ERQLRRARSDSS
Sbjct: 240 RGCQGRGVGAAGGSVAGPGLKLVIERQLRRARSDSS 275
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 234 bits (597), Expect = 9e-62
Identities = 124/171 (72%), Positives = 131/171 (76%), Gaps = 13/171 (7%)
Query: 154 RAQRRPGPGVSAVGASGQQRAPESNERPAEEPT----------PAPMPSSAPRGPTEPAL 203
+ QR PGPG + +R + ERPAE APMPSSAPRGPTEPAL
Sbjct: 42 KGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPAL 101
Query: 204 RRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKR 263
RRPSSA+RPLA PSSS GRAPGAMASPS SS+ATGKPRGRDGRPRREEDDV PEEKR
Sbjct: 102 RRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKR 161
Query: 264 LRLLLEEGSAQP---DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 311
LRLLLE GSAQP +DGEDAPRPGR ETGTQTGGDGRGVSDAGAGVRGCR
Sbjct: 162 LRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCR 212
>gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
Length = 782
Score = 170 bits (431), Expect = 2e-42
Identities = 84/99 (84%), Positives = 88/99 (88%)
Query: 6 ERRRKAHRMLKLYNGLSEGEAVGLPAGPDPLDPTDLNGAHFDPEVYLDKLPRESPLAQLM 65
ERRRKAH MLKLY GLSEGEA G PAGPDPLDPTDLNGAHFDPEVYLDKL RE PLAQLM
Sbjct: 28 ERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLM 87
Query: 66 DSETDMVQQIRALDSDMQTLVYENYDKFIPATEMTNSIK 104
DSETDMV+QIRALDSDMQTLVYENY+KFI AT+ +K
Sbjct: 88 DSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRKMK 126
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 107 bits (266), Expect = 2e-23
Identities = 59/111 (53%), Positives = 68/111 (61%), Gaps = 8/111 (7%)
Query: 197 GPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKP--------RGRDG 248
GP+ R A R S P + R P A + + +A + R DG
Sbjct: 57 GPSPAWRRCAGEASRGRQRARSGPPKSPRRPDAQLRAARTQRARAQTPQLRREDARAGDG 116
Query: 249 RPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRG 299
PRREEDDV PEEKRLRLLLE GSAQP+DGEDAPRPGR+ETGTQTGGDG+G
Sbjct: 117 WPRREEDDVPPEEKRLRLLLEGGSAQPEDGEDAPRPGREETGTQTGGDGKG 167
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 55.5 bits (132), Expect = 8e-08
Identities = 54/199 (27%), Positives = 71/199 (35%), Gaps = 28/199 (14%)
Query: 136 PERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAP 195
P A PQ +G+R R GV +G G++ AP + P ++ P +
Sbjct: 473 PGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 532
Query: 196 RGPTEPALRRPSSAD--RPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRRE 253
RGP+ A + ++ D RP PG + G PG A P G +G P G DGRP
Sbjct: 533 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD-AGPQGKVGPSGAP-GEDGRP--- 587
Query: 254 EDDVTPEEKRLRLLLEEGSAQPDDGEDAPR----PGRKETGTQTGGDGRGVSDAGAGVRG 309
G P P PG K + G G G+RG
Sbjct: 588 -----------------GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 630
Query: 310 CRGCRGRGVGAAGGSVAGP 328
G G A AGP
Sbjct: 631 LPGKDGETGAAGPPGPAGP 649
Score = 47.4 bits (111), Expect = 2e-05
Identities = 60/210 (28%), Positives = 73/210 (34%), Gaps = 47/210 (22%)
Query: 151 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSAD 210
+G R + P GA+G+ P SN P P P P+G + P A
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS-GPPGRAG 942
Query: 211 RPLAPGPSSSPGAGRAPGAMASPSGSSKATGKP--------RGRDGRPRREEDDVTPEEK 262
P GP+ PG PG G S A G P RG G P + + P
Sbjct: 943 EPGLQGPAGPPGEKGEPG----DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG-- 996
Query: 263 RLRLLLEEGSAQP----------DDGEDAP-----------RPGRKETGTQTGGDGRGVS 301
L S +P D G P PGR+ + G DG
Sbjct: 997 -----LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS---PGADGPPGR 1048
Query: 302 DAGAGVRGCRGCRGRGVGAAG--GSVAGPG 329
D AGV+G RG G VGA G G PG
Sbjct: 1049 DGAAGVKGDRGETG-AVGAPGAPGPPGSPG 1077
Score = 46.6 bits (109), Expect = 4e-05
Identities = 58/188 (30%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 160 GPGV-SAVGASGQQ-----RAPESNERPAEEP-TPAPMPSSAPRGPTEPALRRPSSADRP 212
GPG A GA G+ R PE + P EP TP S P G A P + P
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG---SPGPAG----ASGNPGTDGIP 416
Query: 213 LAPGPSSSPGAGRAPG--AMASPSGSSKATGK--PRGRDGRP-----RREEDDVTPEEKR 263
A G + +PG APG P G ATG P+G+ G P + E+
Sbjct: 417 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG-------- 468
Query: 264 LRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAG-AGVRGCRGCRG-RGVGAA 321
+G P + AP P +E G+ GV G G RG G RG G
Sbjct: 469 -----PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 523
Query: 322 GGSVAGPG 329
G PG
Sbjct: 524 AGPKGAPG 531
Score = 42.0 bits (97), Expect = 9e-04
Identities = 53/181 (29%), Positives = 65/181 (35%), Gaps = 26/181 (14%)
Query: 167 GASGQQRAPESNERPAEEPTPA-PMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGR 225
G G++ AP R E TP P P P P P L +A +A G G G
Sbjct: 138 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ--MAGGFDEKAG-GA 194
Query: 226 APGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP---------- 275
G M P G G P G G P + P E E G + P
Sbjct: 195 QLGVMQGPMGPMGPRGPP-GPAGAPGPQGFQGNPGEPG-----EPGVSGPMGPRGPPGPP 248
Query: 276 ----DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAGGSVAGPGL 330
DDGE A +PG+ G G G+ G +G RG G+ A G PG+
Sbjct: 249 GKPGDDGE-AGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 307
Query: 331 K 331
K
Sbjct: 308 K 308
Score = 41.6 bits (96), Expect = 0.001
Identities = 39/108 (36%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 161 PGVSAVGASGQQRAPE---SNERPAEEPTPAPM-PSSAP--RGPTEPALR--------RP 206
PG+ GA G+ AP + P E +P PM P P RG T PA +P
Sbjct: 293 PGLD--GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQP 350
Query: 207 SSADRPLAPGPSSSPGAGRAPGAM--ASPSGSSKATGK--PRGRDGRP 250
A P GP+ PG APGA A P+G+ G PRG G P
Sbjct: 351 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 398
Score = 40.8 bits (94), Expect = 0.002
Identities = 71/241 (29%), Positives = 82/241 (34%), Gaps = 56/241 (23%)
Query: 118 GRPSGCNLVGAGRRCRAWPERAWPQA--GDSDCLGQGRR--------AQRRPG----PGV 163
GRP L GA R P A PQ G S G+ R A+ +PG PG
Sbjct: 549 GRPGEPGLPGA-RGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGP 607
Query: 164 SAV-------GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR-----PSSADR 211
G G AP P ++ ++ P GP PA R P +
Sbjct: 608 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETG---AAGPPGPAGPAGERGEQGAPGPSGF 664
Query: 212 PLAPGPSSSPGAGRAPGAMASPSGSSKATG--KPRGRDGRPRREEDDVTPEEKRLRLLLE 269
PGP PG G PG P G + A G PRG G P E
Sbjct: 665 QGLPGPPGPPGEGGKPGDQGVP-GEAGAPGLVGPRGERGFPG-----------------E 706
Query: 270 EGSAQPDDGEDAPR--PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAG 327
GS G PR PG T G G G G +G G GAAG +AG
Sbjct: 707 RGSPGA-QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER-GAAG--IAG 762
Query: 328 P 328
P
Sbjct: 763 P 763
Score = 40.8 bits (94), Expect = 0.002
Identities = 49/170 (28%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 166 VGASGQQRAP-ESNERPAEEPTPAPMPSSA--PRGPTEPALRRPSSADRPLAPGPSSSPG 222
VG G + AP + R P P P+ A +G P PGP+ S G
Sbjct: 770 VGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP-------------PGPAGSAG 816
Query: 223 AGRAPG--AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGED 280
A APG P G + G P G DG+P + + +K + G+ P
Sbjct: 817 ARGAPGERGETGPPGPAGFAGPP-GADGQPGAKGEQGEAGQKG-----DAGAPGPQGPSG 870
Query: 281 APRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR-GVGAAGGSVAGPG 329
AP P + TG TG G + G G G GR G + G+ PG
Sbjct: 871 APGP-QGPTGV-TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 918
Score = 36.6 bits (83), Expect = 0.036
Identities = 49/196 (25%), Positives = 62/196 (31%), Gaps = 30/196 (15%)
Query: 159 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGP-----TEPALRRPSSADRPL 213
PGP GA G Q + P E PM P GP + +P A
Sbjct: 212 PGPA----GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 267
Query: 214 APGPSSSPGAGRAPG-----------------AMASPSGSSKATGKPRGRDGRPRREEDD 256
PGP + G PG A G +G P G +G P
Sbjct: 268 PPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSP-GENGSPGPMGPR 326
Query: 257 VTPEEKRLRLLLEEGSAQPDDGEDAPR--PGRKETGTQTGGDGRGVSDAGAGVRGCRGCR 314
P E+ A+ +DG+ P PG G G + AG G RG
Sbjct: 327 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 386
Query: 315 G-RGVGAAGGSVAGPG 329
G +G G+ PG
Sbjct: 387 GAQGPRGEPGTPGSPG 402
Score = 34.3 bits (77), Expect = 0.18
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 226
G +G Q P ++ P S PRGP P GPS GA
Sbjct: 1134 GFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV-------------GPSGKDGANGI 1180
Query: 227 PGAMA--SPSGSSKATGKPRGRDGRP 250
PG + P G S TG P G G P
Sbjct: 1181 PGPIGPPGPRGRSGETG-PAGPPGNP 1205
Score = 29.6 bits (65), Expect = 4.4
Identities = 58/198 (29%), Positives = 71/198 (35%), Gaps = 35/198 (17%)
Query: 143 AGDSDCLG-QGRRAQRR-PG-PGVSAVGASGQQRAP-ESNERPAEEPTPAPM---PSSAP 195
AG +G G+R +R PG PG S G G+Q AP S +R P P P+ P
Sbjct: 977 AGQRGIVGLPGQRGERGFPGLPGPS--GEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 1034
Query: 196 RGPTEPALRRPSSAD----------------RPLAPGPSSSPGAGRAPGAMASPSGSSKA 239
P P D P APGP SPG P G + A
Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA-GPTGKQGDRGEAGA 1093
Query: 240 TGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQ--TGGDG 297
G P G G P P+ R ++G A + GE + R TG Q G G
Sbjct: 1094 QG-PMGPSG-PAGARGIQGPQGPR----GDKGEA-GEPGERGLKGHRGFTGLQGLPGPPG 1146
Query: 298 RGVSDAGAGVRGCRGCRG 315
+G G G RG
Sbjct: 1147 PSGDQGASGPAGPSGPRG 1164
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 55.5 bits (132), Expect = 8e-08
Identities = 54/199 (27%), Positives = 71/199 (35%), Gaps = 28/199 (14%)
Query: 136 PERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAP 195
P A PQ +G+R R GV +G G++ AP + P ++ P +
Sbjct: 404 PGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 463
Query: 196 RGPTEPALRRPSSAD--RPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRRE 253
RGP+ A + ++ D RP PG + G PG A P G +G P G DGRP
Sbjct: 464 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD-AGPQGKVGPSGAP-GEDGRP--- 518
Query: 254 EDDVTPEEKRLRLLLEEGSAQPDDGEDAPR----PGRKETGTQTGGDGRGVSDAGAGVRG 309
G P P PG K + G G G+RG
Sbjct: 519 -----------------GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 561
Query: 310 CRGCRGRGVGAAGGSVAGP 328
G G A AGP
Sbjct: 562 LPGKDGETGAAGPPGPAGP 580
Score = 47.4 bits (111), Expect = 2e-05
Identities = 60/210 (28%), Positives = 73/210 (34%), Gaps = 47/210 (22%)
Query: 151 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSAD 210
+G R + P GA+G+ P SN P P P P+G + P A
Sbjct: 815 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS-GPPGRAG 873
Query: 211 RPLAPGPSSSPGAGRAPGAMASPSGSSKATGKP--------RGRDGRPRREEDDVTPEEK 262
P GP+ PG PG G S A G P RG G P + + P
Sbjct: 874 EPGLQGPAGPPGEKGEPG----DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG-- 927
Query: 263 RLRLLLEEGSAQP----------DDGEDAP-----------RPGRKETGTQTGGDGRGVS 301
L S +P D G P PGR+ + G DG
Sbjct: 928 -----LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS---PGADGPPGR 979
Query: 302 DAGAGVRGCRGCRGRGVGAAG--GSVAGPG 329
D AGV+G RG G VGA G G PG
Sbjct: 980 DGAAGVKGDRGETG-AVGAPGAPGPPGSPG 1008
Score = 46.6 bits (109), Expect = 4e-05
Identities = 58/188 (30%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 160 GPGV-SAVGASGQQ-----RAPESNERPAEEP-TPAPMPSSAPRGPTEPALRRPSSADRP 212
GPG A GA G+ R PE + P EP TP S P G A P + P
Sbjct: 295 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG---SPGPAG----ASGNPGTDGIP 347
Query: 213 LAPGPSSSPGAGRAPG--AMASPSGSSKATGK--PRGRDGRP-----RREEDDVTPEEKR 263
A G + +PG APG P G ATG P+G+ G P + E+
Sbjct: 348 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG-------- 399
Query: 264 LRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAG-AGVRGCRGCRG-RGVGAA 321
+G P + AP P +E G+ GV G G RG G RG G
Sbjct: 400 -----PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 454
Query: 322 GGSVAGPG 329
G PG
Sbjct: 455 AGPKGAPG 462
Score = 42.0 bits (97), Expect = 9e-04
Identities = 53/181 (29%), Positives = 65/181 (35%), Gaps = 26/181 (14%)
Query: 167 GASGQQRAPESNERPAEEPTPA-PMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGR 225
G G++ AP R E TP P P P P P L +A +A G G G
Sbjct: 69 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ--MAGGFDEKAG-GA 125
Query: 226 APGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP---------- 275
G M P G G P G G P + P E E G + P
Sbjct: 126 QLGVMQGPMGPMGPRGPP-GPAGAPGPQGFQGNPGEPG-----EPGVSGPMGPRGPPGPP 179
Query: 276 ----DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAGGSVAGPGL 330
DDGE A +PG+ G G G+ G +G RG G+ A G PG+
Sbjct: 180 GKPGDDGE-AGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 238
Query: 331 K 331
K
Sbjct: 239 K 239
Score = 41.6 bits (96), Expect = 0.001
Identities = 39/108 (36%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 161 PGVSAVGASGQQRAPE---SNERPAEEPTPAPM-PSSAP--RGPTEPALR--------RP 206
PG+ GA G+ AP + P E +P PM P P RG T PA +P
Sbjct: 224 PGLD--GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQP 281
Query: 207 SSADRPLAPGPSSSPGAGRAPGAM--ASPSGSSKATGK--PRGRDGRP 250
A P GP+ PG APGA A P+G+ G PRG G P
Sbjct: 282 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 329
Score = 40.8 bits (94), Expect = 0.002
Identities = 71/241 (29%), Positives = 82/241 (34%), Gaps = 56/241 (23%)
Query: 118 GRPSGCNLVGAGRRCRAWPERAWPQA--GDSDCLGQGRR--------AQRRPG----PGV 163
GRP L GA R P A PQ G S G+ R A+ +PG PG
Sbjct: 480 GRPGEPGLPGA-RGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGP 538
Query: 164 SAV-------GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR-----PSSADR 211
G G AP P ++ ++ P GP PA R P +
Sbjct: 539 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETG---AAGPPGPAGPAGERGEQGAPGPSGF 595
Query: 212 PLAPGPSSSPGAGRAPGAMASPSGSSKATG--KPRGRDGRPRREEDDVTPEEKRLRLLLE 269
PGP PG G PG P G + A G PRG G P E
Sbjct: 596 QGLPGPPGPPGEGGKPGDQGVP-GEAGAPGLVGPRGERGFPG-----------------E 637
Query: 270 EGSAQPDDGEDAPR--PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAG 327
GS G PR PG T G G G G +G G GAAG +AG
Sbjct: 638 RGSPGA-QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER-GAAG--IAG 693
Query: 328 P 328
P
Sbjct: 694 P 694
Score = 40.8 bits (94), Expect = 0.002
Identities = 49/170 (28%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 166 VGASGQQRAP-ESNERPAEEPTPAPMPSSA--PRGPTEPALRRPSSADRPLAPGPSSSPG 222
VG G + AP + R P P P+ A +G P PGP+ S G
Sbjct: 701 VGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP-------------PGPAGSAG 747
Query: 223 AGRAPG--AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGED 280
A APG P G + G P G DG+P + + +K + G+ P
Sbjct: 748 ARGAPGERGETGPPGPAGFAGPP-GADGQPGAKGEQGEAGQKG-----DAGAPGPQGPSG 801
Query: 281 APRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR-GVGAAGGSVAGPG 329
AP P + TG TG G + G G G GR G + G+ PG
Sbjct: 802 APGP-QGPTGV-TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 849
Score = 36.6 bits (83), Expect = 0.036
Identities = 49/196 (25%), Positives = 62/196 (31%), Gaps = 30/196 (15%)
Query: 159 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGP-----TEPALRRPSSADRPL 213
PGP GA G Q + P E PM P GP + +P A
Sbjct: 143 PGPA----GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 198
Query: 214 APGPSSSPGAGRAPG-----------------AMASPSGSSKATGKPRGRDGRPRREEDD 256
PGP + G PG A G +G P G +G P
Sbjct: 199 PPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSP-GENGSPGPMGPR 257
Query: 257 VTPEEKRLRLLLEEGSAQPDDGEDAPR--PGRKETGTQTGGDGRGVSDAGAGVRGCRGCR 314
P E+ A+ +DG+ P PG G G + AG G RG
Sbjct: 258 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 317
Query: 315 G-RGVGAAGGSVAGPG 329
G +G G+ PG
Sbjct: 318 GAQGPRGEPGTPGSPG 333
Score = 34.3 bits (77), Expect = 0.18
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 226
G +G Q P ++ P S PRGP P GPS GA
Sbjct: 1065 GFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV-------------GPSGKDGANGI 1111
Query: 227 PGAMA--SPSGSSKATGKPRGRDGRP 250
PG + P G S TG P G G P
Sbjct: 1112 PGPIGPPGPRGRSGETG-PAGPPGNP 1136
Score = 29.6 bits (65), Expect = 4.4
Identities = 58/198 (29%), Positives = 71/198 (35%), Gaps = 35/198 (17%)
Query: 143 AGDSDCLG-QGRRAQRR-PG-PGVSAVGASGQQRAP-ESNERPAEEPTPAPM---PSSAP 195
AG +G G+R +R PG PG S G G+Q AP S +R P P P+ P
Sbjct: 908 AGQRGIVGLPGQRGERGFPGLPGPS--GEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 965
Query: 196 RGPTEPALRRPSSAD----------------RPLAPGPSSSPGAGRAPGAMASPSGSSKA 239
P P D P APGP SPG P G + A
Sbjct: 966 GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA-GPTGKQGDRGEAGA 1024
Query: 240 TGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQ--TGGDG 297
G P G G P P+ R ++G A + GE + R TG Q G G
Sbjct: 1025 QG-PMGPSG-PAGARGIQGPQGPR----GDKGEA-GEPGERGLKGHRGFTGLQGLPGPPG 1077
Query: 298 RGVSDAGAGVRGCRGCRG 315
+G G G RG
Sbjct: 1078 PSGDQGASGPAGPSGPRG 1095
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 50.8 bits (120), Expect = 2e-06
Identities = 69/234 (29%), Positives = 86/234 (36%), Gaps = 27/234 (11%)
Query: 118 GRPSGCNLVGA-GRRCRAWPERAWPQAGDSDCLG----QGRRAQRRP--GPGVSAV-GAS 169
G P G GA G + P G S G QG + +R GPG + GA
Sbjct: 819 GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGAR 878
Query: 170 GQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA--------PGPSSSP 221
G P SN P P P S GP PA + ++ PG SP
Sbjct: 879 GLPGPPGSNGNPGP---PGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSP 935
Query: 222 GAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDA 281
GA PGA P G + TG RG G P +P + ++ + A GE
Sbjct: 936 GAQGPPGA-PGPLGIAGITG-ARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERG 993
Query: 282 P-----RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAGGSVAGPG 329
P PG T + G DG SD G G G +G RG + G+ PG
Sbjct: 994 PPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPG 1047
Score = 44.3 bits (103), Expect = 2e-04
Identities = 51/180 (28%), Positives = 59/180 (32%), Gaps = 37/180 (20%)
Query: 159 PG-PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGP 217
PG PG A G G +P SN P + P P + +GP P P P G
Sbjct: 344 PGSPG--AKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGP----PGINGSPGGKGE 397
Query: 218 SSSPGAGRAPGAMAS--PSGSSKATGKP--RGRDGRPRREEDDVTPEEKRLRLLLEEGSA 273
G APG M + P G + A G P RG G P +
Sbjct: 398 MGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGK--------------------- 436
Query: 274 QPDDGEDAPRPGRKETGT-----QTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGP 328
GE PR R E G G DG+ S G G G G AGP
Sbjct: 437 NGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGP 496
Score = 38.9 bits (89), Expect = 0.007
Identities = 58/191 (30%), Positives = 66/191 (34%), Gaps = 50/191 (26%)
Query: 159 PGPGVSAVGASGQQRAPESNERPAEEPTPA-----PMPSSAPRGPTEPALRR-------- 205
PGP V G SG R PA P PA P P PRG R
Sbjct: 1052 PGP-VGPAGKSGD-RGESGPAGPAGAPGPAGSRGAPGPQG-PRGDKGETGERGAAGIKGH 1108
Query: 206 ---PSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEK 262
P + P +PGP+ GA +PG A P G +G P G+DG
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGP-AGPRGPVGPSGPP-GKDGT------------- 1153
Query: 263 RLRLLLEEGSAQPDD-GEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAA 321
S P G PR R E G++ G G G G G GVGAA
Sbjct: 1154 ---------SGHPGPIGPPGPRGNRGERGSE-GSPGHPGQPGPPGPPGAPGPCCGGVGAA 1203
Query: 322 -----GGSVAG 327
GG AG
Sbjct: 1204 AIAGIGGEKAG 1214
Score = 35.8 bits (81), Expect = 0.062
Identities = 50/196 (25%), Positives = 63/196 (32%), Gaps = 24/196 (12%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 211
G+ R P + G +GQ P P S RG T P P A
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP----PGPAGF 811
Query: 212 PLAPGPSSSPGA------------GRAPGAMASPSGSSKATGKP-----RGRDGRPRREE 254
P APG + PG G PG +A P G S G P +G G P
Sbjct: 812 PGAPGQNGEPGGKGERGAPGEKGEGGPPG-VAGPPGGSGPAGPPGPQGVKGERGSPGGPG 870
Query: 255 DDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCR 314
P + L + P + PG+ G G S +G +G G
Sbjct: 871 AAGFPGARGLP-GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQP 929
Query: 315 G-RGVGAAGGSVAGPG 329
G +G A G PG
Sbjct: 930 GEKGSPGAQGPPGAPG 945
Score = 35.4 bits (80), Expect = 0.081
Identities = 44/175 (25%), Positives = 54/175 (30%), Gaps = 32/175 (18%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR-----------PSSADRPLAP 215
G G Q P N + P P +G T P + P +P P
Sbjct: 600 GGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEP 659
Query: 216 GPSSSPGAGRAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 273
GP GA APG G + A G+ P G G P L G
Sbjct: 660 GPKGDAGAPGAPGG----KGDAGAPGERGPPGLAGAP--------------GLRGGAGPP 701
Query: 274 QPDDGEDAP-RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAG 327
P+ G+ A PG G G G G G +G +G G V G
Sbjct: 702 GPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPG 756
Score = 35.0 bits (79), Expect = 0.11
Identities = 70/253 (27%), Positives = 80/253 (31%), Gaps = 37/253 (14%)
Query: 106 PPSAKSINVS--GIGRPSGCNLVGA----GRRCRAWPERAWPQAGDSDCLGQGRR--AQR 157
PP IN S G G + GA G R P A G G+ + A+
Sbjct: 382 PPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKG 441
Query: 158 RPGP-------GVSAV-GASGQQRAPESNERPAEEPTP-APMPSSAP--RGPTEP--ALR 204
PGP G+ V GA G+ S P P A AP RGP P
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 205 RPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRL 264
A APGP+ GA PG P G RG G P D P
Sbjct: 502 EKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGM-----RGMPGSPGGPGSDGKPGPPGS 556
Query: 265 RLLLEEGSAQPDDGEDAPR--------PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR 316
+ E G P G PR PG K G +G G G +G G G
Sbjct: 557 Q--GESGRPGP-PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGE 613
Query: 317 GVGAAGGSVAGPG 329
GPG
Sbjct: 614 TGPQGPPGPTGPG 626
Score = 33.9 bits (76), Expect = 0.23
Identities = 59/222 (26%), Positives = 75/222 (33%), Gaps = 38/222 (17%)
Query: 129 GRRCRAWPERAWPQAGDSDCLGQGRRAQRR-PGPGVSAVGASGQQRAPESNERPAEEPTP 187
G C P+ P A GQG + + PGP G G+ P +P +P
Sbjct: 82 GECCAVCPQP--PTAPTRPPNGQGPQGPKGDPGPP----GIPGRNGDPGIPGQPGSPGSP 135
Query: 188 AP--MPSSAPRGPTEPALRRPSS------ADRPLA--------PGPSSSPGAGRAPGAMA 231
P + S P GP + + S A LA PGP PG PG+
Sbjct: 136 GPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPG 195
Query: 232 SPSGSSKATGKP-RGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAP-RPGRKET 289
SP G G+P + P + P G A D P RPG +
Sbjct: 196 SP-GYQGPPGEPGQAGPSGPPGPPGAIGP----------SGPAGKDGESGRPGRPGERGL 244
Query: 290 GTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLK 331
G G G++G RG GR G PGLK
Sbjct: 245 PGPPGIKGPAGIPGFPGMKGHRGFDGR--NGEKGETGAPGLK 284
Score = 32.0 bits (71), Expect = 0.89
Identities = 52/190 (27%), Positives = 65/190 (34%), Gaps = 45/190 (23%)
Query: 159 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPT-EPALRRPSSAD----RPL 213
PGP G G+ P +N E P P G EP +D R
Sbjct: 971 PGPQ----GVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDG 1026
Query: 214 APG------PSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLL 267
+PG + SPGA APG P P G+ G R E P
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPPGPVG-----PAGKSG-DRGESGPAGP-------- 1072
Query: 268 LEEGSAQPDDGEDAPRP-GRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR-----GVGAA 321
G+ P AP P G + +TG G AG++G RG G G A
Sbjct: 1073 --AGAPGPAGSRGAPGPQGPRGDKGETGERG------AAGIKGHRGFPGNPGAPGSPGPA 1124
Query: 322 G--GSVAGPG 329
G G++ PG
Sbjct: 1125 GQQGAIGSPG 1134
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 50.1 bits (118), Expect = 3e-06
Identities = 45/149 (30%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 160 GPGVSAVGASGQQRAPESNERPAEEPTPAP---MPSSAPRGPTE-PALRRPSSADRPLAP 215
G VS G +G P P P P P P SAP G + PA S P P
Sbjct: 2 GNEVSLEGGAGDGPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVP 61
Query: 216 GPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP 275
GP PG G PG+ + + G R P ++ TP + R E AQ
Sbjct: 62 GPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTP-KQASATTPGHESPR----ETRAQG 116
Query: 276 DDGEDAPRPGRK---ETGTQTGGDGRGVS 301
G++A P R ++ TQ G VS
Sbjct: 117 PAGQEADGPRRTLQVDSRTQRSGRSPSVS 145
Score = 39.3 bits (90), Expect = 0.006
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 166 VGASGQQRAPE-------SNERPAEEPT----PAPMPSSAPRGPTEPALRRPSSADRPL- 213
+G +G R P S+ PAE P PA + GP+ P + ++ + PL
Sbjct: 2253 LGPTGLYRYPAPSRFPIASSVPPAEGPVYLGKPAAAKAPGAGGPSRPEMPVGAAREEPLP 2312
Query: 214 ----------APGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKR 263
A P+ +P AG+ P A A+P G S A +P +EE +E+
Sbjct: 2313 TTTPAAIKEAAGAPAPAPLAGQKPPADAAPGGGSGALSRPGFEKEEASQEERQRKQQEQL 2372
Query: 264 LRL 266
L+L
Sbjct: 2373 LQL 2375
Score = 35.8 bits (81), Expect = 0.062
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 141 PQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTE 200
PQ G S G P G+ G +AP+ P +P P P P+ G
Sbjct: 3821 PQPGPSTATGPQPAG---PPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAG--- 3874
Query: 201 PALRRPSSADRPLAPG-PSSSPGA-GRAPGAMASPSGSSKATGK 242
RP PG P+ PGA G + + P G+++ GK
Sbjct: 3875 ---ARPGG-----TPGAPAGQPGADGESVFSKILPGGAAEQAGK 3910
Score = 33.9 bits (76), Expect = 0.23
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 164 SAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGA 223
+ A P + ++P +P PAP S+ GPT+ + P PGPS+ P
Sbjct: 3037 ATAAAPATPSGPTAFQQPRFQP-PAPQYSAGSGGPTQNGF---PAHQAPTYPGPSTYPAP 3092
Query: 224 GRAPGAM--ASPSGSSKATGKPRG 245
PGA A P ++ +P G
Sbjct: 3093 AFPPGASYPAEPGLPNQQAFRPTG 3116
Score = 33.5 bits (75), Expect = 0.31
Identities = 48/179 (26%), Positives = 67/179 (37%), Gaps = 35/179 (19%)
Query: 151 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRG----PTEPALRRP 206
QGR+A PGP Q ++P S + P+ + P +G P + AL +
Sbjct: 3748 QGRQAA--PGPQ--------QSQSPSSRQIPSGAASRQPQTQQQQQGLGLQPPQQALTQA 3797
Query: 207 SSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRL 266
+ S+P A + P P G S ATG G PR E+ + +
Sbjct: 3798 RLQQQSQPTTRGSAPAASQ-PAGKPQP-GPSTATGPQPA--GPPRAEQTNGS-------- 3845
Query: 267 LLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSV 325
+G+A+ AP+ GR G G AGA G G GA G SV
Sbjct: 3846 ---KGTAK------APQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPGADGESV 3895
Score = 32.0 bits (71), Expect = 0.89
Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 20/96 (20%)
Query: 156 QRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAP 215
Q +P P + E+ +P P P AP TEP R
Sbjct: 374 QGQPAPSKGTPKIVFNDASKEAGPKPLGS---GPGPGPAPGAKTEPGARM---------- 420
Query: 216 GPSSSPGAGRAPGAMASP-------SGSSKATGKPR 244
GP S PGA G SP +SKA KP+
Sbjct: 421 GPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKPK 456
Score = 28.9 bits (63), Expect = 7.6
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 180 RPAEEPTPAPMPSSA-PRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSK 238
+P + P PS P+ A + PGP +PGA PGA P
Sbjct: 368 QPEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGPGPAPGAKTEPGARMGPGSGPG 427
Query: 239 ATGKPRG 245
A K G
Sbjct: 428 ALPKTGG 434
Score = 28.5 bits (62), Expect = 9.9
Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 9/132 (6%)
Query: 136 PERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAP 195
P A P G G G+ G G + + A P P P P P S
Sbjct: 18 PGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTS 77
Query: 196 R--GPTEPALRRPSSADRP-----LAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDG 248
R P EP + +++ P PG SP RA G + + T + R
Sbjct: 78 RRLDPKEPLGNQRAASPTPKQASATTPG-HESPRETRAQGPAGQEADGPRRTLQVDSRTQ 136
Query: 249 RPRREEDDVTPE 260
R R V+P+
Sbjct: 137 RSGR-SPSVSPD 147
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 50.1 bits (118), Expect = 3e-06
Identities = 49/149 (32%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 181 PAEEPTPAPMP--SSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSK 238
P EEP+P P P S PTEP + P+ PLA P SP P A + S K
Sbjct: 4910 PPEEPSPPPSPLAPSPASPPTEPLVELPT---EPLAEPPVPSP----LPLASSPESARPK 4962
Query: 239 ATGKP--RGRDGRPRREEDDVTPEEKRLRLLL--EEGSAQPDDGEDAPRPGRKETGTQTG 294
+P G D RP R + KRLRLLL ++GS + +D + ++ GT
Sbjct: 4963 PRARPPEEGEDSRPPRLKKWKGVRWKRLRLLLTIQKGSGRQEDEREVAE-FMEQLGTALR 5021
Query: 295 GDGRGVSDAGAGVRGCRGCRGRGVGAAGG 323
D +R C C G GA G
Sbjct: 5022 PD-----KVPRDMRRCCFCHEEGDGATDG 5045
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 141 PQAGDSDCLGQGRRAQRRP-----------GPGVSAVGASGQQRAPESNERPAEEPTP-A 188
PQ G LG G R Q P GP + V + +P+ +RP++ P+P +
Sbjct: 4269 PQTGPLQELGAGPRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQLPSPSS 4328
Query: 189 PMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMA 231
+P+ A PT P +P GP+ P GR A A
Sbjct: 4329 QLPTEAQLPPTHPGTPKPQ--------GPTLEPPPGRVSPAAA 4363
Score = 38.9 bits (89), Expect = 0.007
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 181 PAEEPTPAPMPSSAPRGPTEPALRR-PSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA 239
P EE +P P +P P A R P + PL+P P SP ++ P +S+
Sbjct: 575 PPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESP--------LSPPPEASRL 626
Query: 240 TGKPRGRDGRPRREEDDVTPEEKRLRL----LLEEGSAQPDDGEDAPRPGRKET 289
+ P P EE ++P + RL ++ S P++ +P P T
Sbjct: 627 SPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPT 680
Score = 36.6 bits (83), Expect = 0.036
Identities = 51/190 (26%), Positives = 64/190 (33%), Gaps = 24/190 (12%)
Query: 179 ERPAEEPTPAPMPS-SAPRGPTEPALRRPSSADRPLAP-----GPSSSPGAGRAPGAMAS 232
E A P P+PM S P PAL S AP P S P G+ PG++AS
Sbjct: 1087 EPSATSPLPSPMGDLSCPAPSPAPALDDFSGLGEDTAPLDGIDAPGSQPEPGQTPGSLAS 1146
Query: 233 PSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPR-PGRKETGT 291
S P E VTP E G P + ++ PR P T
Sbjct: 1147 ELKGSPVLLDP--------EELAPVTPMEVYPECKQTAGQGSPCEEQEEPRAPVAPTPPT 1198
Query: 292 QTGGD------GRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDS 345
D DA A G G GGS++ ++L + AR +
Sbjct: 1199 LIKSDIVNEISNLSQGDASASFPGSEPLLGSPDPEGGGSLS---MELGVSTDVSPARDEG 1255
Query: 346 SRRPPRRQLP 355
S R LP
Sbjct: 1256 SLRLCTDSLP 1265
Score = 35.4 bits (80), Expect = 0.081
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 181 PAEEPTPAPMPSSAPRGPTEPALR-RPSSADRPLAPGPSSSPGAGRAPGAMAS-PSGSSK 238
P EE +P P +P P A R P D P +P P SP + ++ S P S
Sbjct: 665 PPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESP 724
Query: 239 ATGKPRGRDGRPRREEDDVT--PEEKRLRLLLEEG--SAQPDDGEDAPRP 284
P PR E ++ PEE L EE S Q ++ +P+P
Sbjct: 725 LLPLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQP 774
Score = 34.7 bits (78), Expect = 0.14
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 176 ESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSG 235
ES P EE P+P + P E + P + PL+P P P + P
Sbjct: 517 ESPLSPPEESPPSPALETPLSPPPEASPLSPPFEESPLSPPPEELP--------TSPPPE 568
Query: 236 SSKATGKPRGRDGRPRREEDDVTPEEKRLRLL--LEEGSAQPDDGEDAPRP 284
+S+ + P P EE ++P + RL EE P E P
Sbjct: 569 ASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSP 619
Score = 34.3 bits (77), Expect = 0.18
Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 181 PAEEPTPAPMPSSAPRGPTEPALR----------RPSSADRPLAPGPSSSPGAGRAPGAM 230
P E+ +P P +P P R P + PL+P P SP + +
Sbjct: 629 PPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASR 688
Query: 231 ASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP 275
SP T P P PE+ + L LEE P
Sbjct: 689 LSPPPEDSPTSPP------PEDSPASPPPEDSLMSLPLEESPLLP 727
Score = 33.9 bits (76), Expect = 0.23
Identities = 34/130 (26%), Positives = 44/130 (33%), Gaps = 15/130 (11%)
Query: 161 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPT----EPALRRPSSADRPLAPG 216
P V GQ + +EP P + P G EP L P + + PL P
Sbjct: 385 PDALYVACQGQPKGGHVTSMQPKEPGPLQCEAK-PLGKAGVQLEPQLEAPLNEEMPLLPP 443
Query: 217 PSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLL--LEEGSAQ 274
P SP ++ P S + P P EE +P + L L LEE
Sbjct: 444 PEESP--------LSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLS 495
Query: 275 PDDGEDAPRP 284
P E P
Sbjct: 496 PPPEESPLSP 505
Score = 32.7 bits (73), Expect = 0.52
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 175 PESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAP-GPSSSPGAGRAPGAMASP 233
P P +E P P PR P P P+ P P SSP + P + SP
Sbjct: 4267 PGPQTGPLQELGAGPRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQLPSP 4326
Query: 234 SGSSKATGK-PRGRDGRPRREEDDVTPEEKRL 264
S + P G P+ + + P R+
Sbjct: 4327 SSQLPTEAQLPPTHPGTPKPQGPTLEPPPGRV 4358
Score = 30.0 bits (66), Expect = 3.4
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 180 RPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA 239
RP EE +P P +P P + + PL+P P SP + ++ P +S
Sbjct: 487 RPLEESPLSPPPEESPLSPPPESSPFSPLEESPLSP-PEESPPSPALETPLSPPPEASPL 545
Query: 240 TGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRP 284
+ P EE +P + RL S P++ +P P
Sbjct: 546 SPPFEESPLSPPPEELPTSPPPEASRL-----SPPPEESPMSPPP 585
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 179 ERPAEEPTPAPMPSSAPRGPT-----------EPALRRPSSADRPLAPGPSSSP 221
E+P EEP P P P P EPAL P + PL+P P P
Sbjct: 865 EKPPEEPGQCPAPEELPLFPPPGEPSLSPLLGEPALSEP--GEPPLSPLPEELP 916
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 171 QQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSS-----ADRPLAPGPSSSP 221
+ ++P RP E P P + AP P+ P + RP S A PL P P P
Sbjct: 2339 EPQSPGLGLRPQEPP---PAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPP 2391
Score = 28.5 bits (62), Expect = 9.9
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 181 PAEEPTP-APMPSSAPRGPTEPALRRP--SSADRPLAP---GPSSSPGAGRAPGAMASPS 234
P+++P AP PR PT P P S P P G SS PGAG+ +P
Sbjct: 2172 PSQDPFGLAPAYPLEPRFPTAPPTYPPYPSPTGAPAQPPMLGASSRPGAGQPGEFHTTPP 2231
Query: 235 GSSK 238
G+ +
Sbjct: 2232 GTPR 2235
Score = 28.5 bits (62), Expect = 9.9
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 156 QRRPGPGVS---AVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRP 212
Q++ GPGV A+G Q P S+ + +P P P+G PA P
Sbjct: 3756 QQQQGPGVQTNQALGPKPQGLMPPSSHQGLLVQQLSPQPPQGPQGMLGPAQVAVLQQQHP 3815
Query: 213 LAPGP 217
A GP
Sbjct: 3816 GALGP 3820
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.3 bits (116), Expect = 5e-06
Identities = 54/186 (29%), Positives = 65/186 (34%), Gaps = 24/186 (12%)
Query: 151 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR----- 205
+G + PG G SG+ AP S + P P+ P GP +R
Sbjct: 415 RGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGE 474
Query: 206 PSSADRPLAPGPSSSPGAGRAPGA--MASPSGSSKATGK-----PRGRDGRPRREEDDVT 258
P P PG PG+ PGA +A P G + G P+G G R +
Sbjct: 475 PGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGL 534
Query: 259 PEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG--R 316
P K L GS PD P P G DGR G RG G G
Sbjct: 535 PGAK--GLTGSPGSPGPDGKTGPPGP--------AGQDGRPGPPGPPGARGQAGVMGFPG 584
Query: 317 GVGAAG 322
GAAG
Sbjct: 585 PKGAAG 590
Score = 45.4 bits (106), Expect = 8e-05
Identities = 56/166 (33%), Positives = 62/166 (37%), Gaps = 24/166 (14%)
Query: 181 PAEEPTPAPMPS----SAPRGPTEPALRRPSSADR--PLAPGP---SSSPGAGRAPGAMA 231
P P PA P S P GP P R + DR P PGP + PGA PGA
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827
Query: 232 SPSGSSKATGK-----PRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAP-RPG 285
P G + A G P G G P + P K R GSA P P G
Sbjct: 828 EP-GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR-----GSAGPPGATGFPGAAG 881
Query: 286 RKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAG--GSVAGPG 329
R +G G AG G +G RG G AG G V PG
Sbjct: 882 RVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE-TGPAGRPGEVGPPG 926
Score = 42.7 bits (99), Expect = 5e-04
Identities = 55/195 (28%), Positives = 70/195 (35%), Gaps = 49/195 (25%)
Query: 175 PESNERPAEEPTPA---PMPSSAPRGPTEPA--LRRPSSADRPLAPGPSSSPGAGRAPG- 228
P+ +E P ++ T P + PRGP PA R +P PGP PG PG
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGL 155
Query: 229 --------------------AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLL 268
++ P G S G P G G P + P E
Sbjct: 156 GGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLP-GPPGAPGPQGFQGPPGEPG----- 209
Query: 269 EEGSAQP--------------DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCR 314
E G++ P DDGE A +PGR G G AG+ G +G R
Sbjct: 210 EPGASGPMGPRGPPGPPGKNGDDGE-AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHR 268
Query: 315 G-RGVGAAGGSVAGP 328
G G+ A G AGP
Sbjct: 269 GFSGLDGAKGD-AGP 282
Score = 41.6 bits (96), Expect = 0.001
Identities = 55/201 (27%), Positives = 69/201 (34%), Gaps = 42/201 (20%)
Query: 143 AGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPA 202
AG +G + R PG+ G SG+ + E P PM GP
Sbjct: 955 AGQRGVVGLPGQRGERGFPGLP--GPSGEPGKQGPSGASGERGPPGPMGPPGLAGP---- 1008
Query: 203 LRRPSSADRPLAPGPSSSPGAGRAPGAM--------ASPSGSSKATGK-----PRGRDGR 249
P + R APG SPG +PGA A P G+ A G P G+ G
Sbjct: 1009 ---PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSG- 1064
Query: 250 PRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRG 309
R E P + A+ G PR + ETG Q G RG
Sbjct: 1065 DRGETGPAGPAGP-----VGPVGARGPAGPQGPRGDKGETGEQ-------------GDRG 1106
Query: 310 CRGCRG-RGVGAAGGSVAGPG 329
+G RG G+ G PG
Sbjct: 1107 IKGHRGFSGLQGPPGPPGSPG 1127
Score = 40.0 bits (92), Expect = 0.003
Identities = 50/200 (25%), Positives = 64/200 (32%), Gaps = 35/200 (17%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRG-------PTEPALR 204
G R ++ P G G P +P E+ P + + P G P E ++
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 205 RPSSADRPL----APGPSSSPGAGRAPGAMASPSGSSKATGKP--RGRDG--RPRREEDD 256
P P APG + G APGA S G+ G P RG G P+ + D
Sbjct: 689 GPPGPAGPRGANGAPGNDGAKGDAGAPGAPGS-QGAPGLQGMPGERGAAGLPGPKGDRGD 747
Query: 257 VTPEEKRLRLLLEEGSAQPDDGEDAPR--------PGRKETGTQTGGDGRGVSDAGAGVR 308
P+ A G+D R PG G G G R
Sbjct: 748 AGPK-----------GADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR 796
Query: 309 GCRGCRGRGVGAAGGSVAGP 328
G G RG AGP
Sbjct: 797 GAPGDRGEPGPPGPAGFAGP 816
Score = 37.7 bits (86), Expect = 0.016
Identities = 49/171 (28%), Positives = 58/171 (33%), Gaps = 31/171 (18%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 226
G +G + P S P E P M PRG P RP APGP+ + G A
Sbjct: 281 GPAGPKGEPGS---PGENGAPGQM---GPRG-------LPGERGRPGAPGPAGARGNDGA 327
Query: 227 PGAMASPSGSSKATGKP--------RGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDG 278
GA A P G + G P +G G P+ P+ R G P
Sbjct: 328 TGA-AGPPGPTGPAGPPGFPGAVGAKGEAG-PQGPRGSEGPQGVR-------GEPGPPGP 378
Query: 279 EDAPRP-GRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGP 328
A P G Q G G + AG G G RG G GP
Sbjct: 379 AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429
Score = 34.3 bits (77), Expect = 0.18
Identities = 55/175 (31%), Positives = 62/175 (35%), Gaps = 21/175 (12%)
Query: 167 GASGQQRAPESNERPAEEPTP-----APMPSSAPRGPTEP--ALRRPSSADRPLAPGPSS 219
GA G P PA P P AP A RG P A P +A R PGPS
Sbjct: 833 GAKGDA-GPPGPAGPAGPPGPIGNVGAPGAKGA-RGSAGPPGATGFPGAAGRVGPPGPSG 890
Query: 220 SPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGE 279
+ G PG P+G G PRG G P +V P E+GS D
Sbjct: 891 NAGPPGPPG----PAGKEGGKG-PRGETG-PAGRPGEVGPPGPP-GPAGEKGSPGADGPA 943
Query: 280 DAP-RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG----RGVGAAGGSVAGPG 329
AP PG + Q G G G G G G +G A G PG
Sbjct: 944 GAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG 998
Score = 29.6 bits (65), Expect = 4.4
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 226
G SG Q P P E+ + PRGP P SA P G + PG
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP-------PGSAGAPGKDGLNGLPGPIGP 1164
Query: 227 PGAMASPSGSSKATGKPRGRDGRP 250
PG P G + G P G G P
Sbjct: 1165 PG----PRGRTGDAG-PVGPPGPP 1183
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 48.9 bits (115), Expect = 7e-06
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 20/236 (8%)
Query: 116 GIGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSA---VGASGQQ 172
G+ + C + RR R W + P A + + G + P PG + +G SG+
Sbjct: 23 GVRKEMHCGVASRWRRRRPWLD---PAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRD 79
Query: 173 -RAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMA 231
R+P+S+ + P P +P +P GP P PS P P P +P +
Sbjct: 80 SRSPDSS---SPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVI 136
Query: 232 SPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGT 291
S S S P P V+ + + L G + P + P G +
Sbjct: 137 SSSMGSPGLPPP-----APPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHC 191
Query: 292 QTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSR 347
G GAG R C C R G G + G K +R +R+ + S R
Sbjct: 192 PPPPGG-----PGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCR 242
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 48.9 bits (115), Expect = 7e-06
Identities = 54/183 (29%), Positives = 69/183 (37%), Gaps = 24/183 (13%)
Query: 151 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSAD 210
+G+R R V G G++ AP + P + P P + RGP + + S D
Sbjct: 500 EGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGD 559
Query: 211 RPLAPGPSSSPGAGRAPG--AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLL 268
P PG PGA G + P G G P G DGRP P +R
Sbjct: 560 -PGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAP-GEDGRPG------PPGSIGIR--- 608
Query: 269 EEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR-GVGAAGGSVAG 327
QP PG K + +G G+ AGV G RG G+ G G V
Sbjct: 609 ----GQPG---SMGLPGPKGS---SGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGP 658
Query: 328 PGL 330
PGL
Sbjct: 659 PGL 661
Score = 40.0 bits (92), Expect = 0.003
Identities = 71/241 (29%), Positives = 87/241 (36%), Gaps = 61/241 (25%)
Query: 129 GRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEE-PTP 187
G R R P+ A Q G G +PGP + +G G P + E PT
Sbjct: 342 GERGRLGPQGAPGQRGAHGMPG-------KPGP-MGPLGIPGSSGFPGNPGMKGEAGPTG 393
Query: 188 APMPS--------SAPRGPT-EPALRRPSSAD-RPLAPGPSSSPGAGRAPGAMASPSGSS 237
A P + P GP P L D P A GP+ SPG PG+ A P GS
Sbjct: 394 ARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGS-AGPPGSP 452
Query: 238 KATGK--PRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP--------------DDGEDA 281
G P+G G+P D P K G A P GE+
Sbjct: 453 GPQGSTGPQGIRGQP---GDPGVPGFK--------GEAGPKGEPGPHGIQGPIGPPGEEG 501
Query: 282 PRPGRKETGT-----------QTGGDGRGVSDAGAGVRGCRGCRGRGVGAAG--GSVAGP 328
R R + GT G G SD G +G +G RG VG++G GS P
Sbjct: 502 KRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERG-PVGSSGPKGSQGDP 560
Query: 329 G 329
G
Sbjct: 561 G 561
Score = 38.5 bits (88), Expect = 0.010
Identities = 49/177 (27%), Positives = 56/177 (31%), Gaps = 27/177 (15%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 226
G GQQ P E P PM RGP P P PG PG
Sbjct: 225 GLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP----------PGKPGEDGEPGRNGN 274
Query: 227 PGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGR 286
PG + +GS A G P G G P + K L E A GE P
Sbjct: 275 PGEVGF-AGSPGARGFP-GAPGLPGLKGH---RGHKGLEGPKGEVGAPGSKGEAGPTGPM 329
Query: 287 KETGT-----QTGGDGRGVSDAGAGVRGCRGCRGR-------GVGAAGGSVAGPGLK 331
G G GR G RG G G+ G+ + G PG+K
Sbjct: 330 GAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMK 386
Score = 36.6 bits (83), Expect = 0.036
Identities = 55/205 (26%), Positives = 63/205 (30%), Gaps = 48/205 (23%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAE--------EPTPAPMPSS-APRGPTE-P 201
G R + P V G G P P E P P + S P GP P
Sbjct: 834 GSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVP 893
Query: 202 ALRR-------------PSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKP--RGR 246
L+ P SA R PGP+ +PG A P G G P RG
Sbjct: 894 GLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP-------AGPLGEPGKEGPPGLRGD 946
Query: 247 DGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGE-DAPRPGRKETGTQTGGDGRGVSDAGA 305
G R D G A P G D PG G G +
Sbjct: 947 PGSHGRVGD--------------RGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQR 992
Query: 306 GVRGCRGCRG-RGVGAAGGSVAGPG 329
G+ G G RG RG+ G PG
Sbjct: 993 GIVGMPGQRGERGMPGLPGPAGTPG 1017
Score = 36.2 bits (82), Expect = 0.047
Identities = 52/201 (25%), Positives = 64/201 (31%), Gaps = 37/201 (18%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPT------------ 199
G R ++ P G G P +P ++ P + P GP
Sbjct: 663 GERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEP 722
Query: 200 -------EPALRRPSSADRPL-APGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPR 251
E + D P +PGPS +PG PG P RG G P
Sbjct: 723 GITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPG--------ERGIAGTPG 774
Query: 252 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRP-GRKETGTQTGGDGRGVSDAGAGVRGC 310
+ D EK EG+A D P P G TG G G G
Sbjct: 775 PKGDRGGIGEKG-----AEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGS 829
Query: 311 RGCRG-RGVGAAGGSV--AGP 328
RG G RG G+V AGP
Sbjct: 830 RGNPGSRGENGPTGAVGFAGP 850
Score = 35.8 bits (81), Expect = 0.062
Identities = 55/200 (27%), Positives = 69/200 (34%), Gaps = 29/200 (14%)
Query: 152 GRRAQRR----PGPG-----VSAVGASGQQR-----APESNERPAEEPTP-APMPSSAPR 196
G+R +R PGP V GA+G + P + P EP P P +
Sbjct: 999 GQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP 1058
Query: 197 GPTEPALRRPSSADRPLAPGPSSSPGAGRAPG--AMASPSGSSKATGKP--RGRDGRPRR 252
G R D PGP+ PG+ APG G + G P RG G P R
Sbjct: 1059 GRDGAVGERGDRGD----PGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGR 1114
Query: 253 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQ--TGGDGRGVSDAGAGVRGC 310
P + R + D G+ + R TG Q G G AG+ G
Sbjct: 1115 AGKRGLPGPQGPR---GDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGP 1171
Query: 311 RGCRG-RGVGAAGGSVAGPG 329
G RG G G PG
Sbjct: 1172 FGPRGPPGPVGPSGKEGNPG 1191
Score = 35.8 bits (81), Expect = 0.062
Identities = 35/141 (24%), Positives = 41/141 (29%), Gaps = 21/141 (14%)
Query: 141 PQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTE 200
PQ D G R R G G P N P P P GP
Sbjct: 1123 PQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVG 1182
Query: 201 PALRRPSSADRPLAP-------------GPSSSPGAGRAPGAMASPSGSSKATGKPRGR- 246
P+ + + PL P GP PG PG P + A G G
Sbjct: 1183 PSGKEGNPG--PLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHY 1240
Query: 247 -----DGRPRREEDDVTPEEK 262
D P ED P++K
Sbjct: 1241 DESMPDPLPEFTEDQAAPDDK 1261
Score = 28.5 bits (62), Expect = 9.9
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 215 PGPSSSPGAG-----RAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLE 269
PGP+ PG+ R P P G G+P G G+P P
Sbjct: 131 PGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEP-GVPGQPGAPGPPGHPSHPG-----P 184
Query: 270 EGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPG 329
+G ++P + A + G+Q G V G RG +G +G+ GA G PG
Sbjct: 185 DGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGP--RGPQGLQGQQGGA--GPTGPPG 240
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 48.5 bits (114), Expect = 9e-06
Identities = 59/220 (26%), Positives = 86/220 (39%), Gaps = 29/220 (13%)
Query: 104 KLPPSAKSINVSGIGRP----------SGCNLVGAGR---RCRAWPERAWPQAGDSDCLG 150
K P SA + SG GRP SG + AGR R P+R +A +
Sbjct: 435 KKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQLPDRKSTKAPSGKLV- 493
Query: 151 QGRRAQRRPGPGVSAVGASGQQRA--------PESNERPAEEPTPAPMPSSAPRGPTEPA 202
R R G S ++RA ES + A P+ PS+ P ++
Sbjct: 494 --ERKARSLDEGASQDAPKLKKRALSHADLFGDESEDEAAGPGVPSVWPSALPSLSSDSD 551
Query: 203 LRRPSSADRPLAPGP----SSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVT 258
SS P A GP +SP AP + +S S S+ + G + + D
Sbjct: 552 SDSDSSLGFPEAQGPPKRLKASPPPSPAPSSSSSSSSSTSSAGADVDYSALEKEVDFDSD 611
Query: 259 PEEKRLRLLLEEGSAQPDD-GEDAPRPGRKETGTQTGGDG 297
P E+ LR+ E S + +D G A +P ++E + G G
Sbjct: 612 PMEECLRIFNESTSVKTEDRGRLARQPPKEEKSEEKGLSG 651
Score = 32.3 bits (72), Expect = 0.68
Identities = 38/147 (25%), Positives = 50/147 (34%), Gaps = 25/147 (17%)
Query: 161 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPT------EPALRRPSSADRPLA 214
P A S Q +P ++ T AP S G + RP R
Sbjct: 356 PASPAQVQSSQDGGCPKEGKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVEKPRADK 415
Query: 215 PGP-SSSPG--AGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEG 271
GP +SSP A R G PS ++ +GR RP R + G
Sbjct: 416 KGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDRPARRPSPTS------------G 463
Query: 272 SAQPDDGEDAPR----PGRKETGTQTG 294
++P G PR P RK T +G
Sbjct: 464 DSRPAAGRGPPRPLQLPDRKSTKAPSG 490
Score = 29.3 bits (64), Expect = 5.8
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 171 QQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA----PGPSS--SPGAG 224
+QR E A P+ APRGP P PLA PG SP AG
Sbjct: 105 EQRRYRELLETTREHRSAEAPALAPRGPNASPTVGPDEDAFPLAFDYSPGSHGLLSPDAG 164
Query: 225 RAPGAMASPS 234
P +A+P+
Sbjct: 165 YQPTPLAAPA 174
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 48.1 bits (113), Expect = 1e-05
Identities = 54/180 (30%), Positives = 71/180 (39%), Gaps = 17/180 (9%)
Query: 159 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS 218
PGP GA+GQ+ R P S P GP PA R P APGPS
Sbjct: 1364 PGPKGDP-GAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGER----GHPGAPGPS 1418
Query: 219 SSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQ---- 274
SPG PG+M + K R + ++ + R++ +E +A
Sbjct: 1419 GSPGLPGVPGSMGDMVNYDEI--KRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPG 1476
Query: 275 PDDGEDAP-RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR----GVGAAG-GSVAGP 328
P + AP RPG + G GR GVRG G +G G+G AG + GP
Sbjct: 1477 PPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGP 1536
Score = 35.0 bits (79), Expect = 0.11
Identities = 38/125 (30%), Positives = 46/125 (36%), Gaps = 23/125 (18%)
Query: 151 QGRRAQRRPG----PGVSAV----GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPA 202
QG RPG PG+ V G G Q P R + P P P P
Sbjct: 750 QGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPG 809
Query: 203 LRRPSSADRPLAPGPSSSPGAGRAPGAMAS-----PSGSSKATGKPRGRDGRPRREEDDV 257
R P PGP+ GA +PG + P G+S P GRDG+ +
Sbjct: 810 PRGP--------PGPTGEKGAQGSPGVKGATGPVGPPGAS--VSGPPGRDGQQGQTGLRG 859
Query: 258 TPEEK 262
TP EK
Sbjct: 860 TPGEK 864
Score = 33.5 bits (75), Expect = 0.31
Identities = 47/170 (27%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPT-EPALRRPSS-ADRPLAPGPSSSPGAG 224
G G+ P P P M +G T P L P +P PG + PGA
Sbjct: 1216 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAE 1275
Query: 225 RAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAP 282
PGAM P G G P G G+P + E G A G+ P
Sbjct: 1276 GEPGAM-GPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGL-PGQPGP 1333
Query: 283 RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAGGSVAGPGLK 331
PG + G DG + G +G G G +G A G G K
Sbjct: 1334 -PGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEK 1382
Score = 33.1 bits (74), Expect = 0.40
Identities = 52/187 (27%), Positives = 71/187 (37%), Gaps = 16/187 (8%)
Query: 159 PGP-GVSAV-GASGQQRAP---ESNERPAEEPTPA-PMPSSAPRGPTEPALRRPSSADRP 212
PGP G + + GA G+ P SN + + A P PS P P P +
Sbjct: 616 PGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKA 675
Query: 213 LAPGPSSSPGAGRAPGAMASP--SGSSKATGKP--RGRDGRPRREEDDVTPEEKRLRLLL 268
G G PG +P +G +G+P +G G P+ E+ D L+ +
Sbjct: 676 GERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAG-PKGEKGDGCTACPSLQGTV 734
Query: 269 EEGSAQPDD----GEDAPRP-GRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGG 323
+ + +P GE P GR Q G G GV+G G GRGV G
Sbjct: 735 TDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQG 794
Query: 324 SVAGPGL 330
PGL
Sbjct: 795 EPGAPGL 801
Score = 31.6 bits (70), Expect = 1.2
Identities = 49/187 (26%), Positives = 60/187 (32%), Gaps = 23/187 (12%)
Query: 151 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSAD 210
+G ++ PG VG+ G P + EE P S P GP P
Sbjct: 1006 RGDNSEGDPG----CVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGP--------- 1052
Query: 211 RPLAPGPSSSPGAGRAPG--AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLL 268
P PG SPG G + +G G P G+ G P P K R
Sbjct: 1053 -PGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPP-GQPGYPGATGPPGLPGIKGERGYT 1110
Query: 269 ----EEGSAQPDDGEDAP-RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAG 322
E+G P E P PG + G G G +G G G G
Sbjct: 1111 GSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFP 1170
Query: 323 GSVAGPG 329
G V PG
Sbjct: 1171 GKVGSPG 1177
Score = 30.0 bits (66), Expect = 3.4
Identities = 58/215 (26%), Positives = 71/215 (33%), Gaps = 44/215 (20%)
Query: 142 QAGDSDCLGQGRRAQRRPGPG-VSAVGASGQQRAPE--SNERPAEEPTPAPMPSSAPRGP 198
+ GD G + R PG + +G GQ+ P E A EP P
Sbjct: 403 EKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGP----------- 451
Query: 199 TEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGK--PRGRDGRP--RREE 254
P L P P PG P PG GSS GK P G+ G+P + E+
Sbjct: 452 --PGLPGPPGIGLPGTPGDPGGP-----PGPKGD-KGSSGIPGKEGPGGKPGKPGVKGEK 503
Query: 255 DD-----VTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRG------VSDA 303
D T E + G P P P R + G Q +G S
Sbjct: 504 GDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVV 563
Query: 304 GA-------GVRGCRGCRGRGVGAAGGSVAGPGLK 331
GA G G G G G+ G PGLK
Sbjct: 564 GAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLK 598
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 47.0 bits (110), Expect = 3e-05
Identities = 52/186 (27%), Positives = 67/186 (36%), Gaps = 25/186 (13%)
Query: 156 QRRPGPGVSAVGASGQQRAPESNERPAEEPTP-APMPSSAPRGPTEPALRRPSSADRPLA 214
Q P P + QQ+ P + P ++P P P P P +P S+ +A
Sbjct: 53 QSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVA 112
Query: 215 PGPSSSPGAGRAPGAMAS-PSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 273
GP +PG G AP A +S P + +G P G P TP G+
Sbjct: 113 QGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGP-------TPTPPPAVTSAPPGAP 165
Query: 274 QPDDGEDAPRPGRKETGTQTGG--------DGRGVS-DAGAGVRGCRGCRGRGVGAAGGS 324
P P G T Q GG G G G G G +G + G GG
Sbjct: 166 PP----TPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGG- 220
Query: 325 VAGPGL 330
GPGL
Sbjct: 221 --GPGL 224
Score = 37.7 bits (86), Expect = 0.016
Identities = 34/114 (29%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 141 PQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMP----SSAPR 196
PQ + QG G A ++ P S P P P P P +SAP
Sbjct: 103 PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPP 162
Query: 197 G---PTEPALRRPSSADRPLAPGPSSSPGA--GRAPGAMASPSGSSKATGKPRG 245
G PT P+ P++ P A GP P A G PG P GK G
Sbjct: 163 GAPPPTPPSSGVPTTP--PQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPG 214
Score = 33.9 bits (76), Expect = 0.23
Identities = 27/103 (26%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 150 GQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPT-------PAPMPSSAPRGPTEPA 202
G G P P V++ P S+ P P PA +P P P
Sbjct: 144 GSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPG 203
Query: 203 LRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRG 245
P P P P PG PG P + G+PRG
Sbjct: 204 PGGPKGGKMPGGPKPGGGPGLS-TPG--GHPKPPHRGGGEPRG 243
>gi|19913396 smoothelin isoform b [Homo sapiens]
Length = 915
Score = 47.0 bits (110), Expect = 3e-05
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 23/169 (13%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 226
G S +RA + RP + S + P +PA R S+ PLA GPSS AG
Sbjct: 281 GPSDTKRADVAGPRPCQR-------SLSVLSPRQPAQNREST---PLASGPSSFQRAGSV 330
Query: 227 PGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGR 286
+ + S R +DG P+ +TP L A G + P
Sbjct: 331 RDRVHKFTSDSPMAA--RLQDGTPQAALSPLTPARLLGPSLTSTTPASSSSGSSSRGP-- 386
Query: 287 KETGTQTGGDGRGVSDAGAGVRGC---RGCRGRGVGA------AGGSVA 326
+T ++ + RGV+ A +R C G RGRG+ A AGG VA
Sbjct: 387 SDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRGLAARPLENRAGGPVA 435
Score = 34.3 bits (77), Expect = 0.18
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 175 PESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPS 234
P S P+ +P P+S P P EPA + +A+ P +P P SP +P SP+
Sbjct: 195 PGSTSSSPASPSSSPTPAS-PEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPT 253
Score = 32.3 bits (72), Expect = 0.68
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 172 QRAPESNERPAEEPTPAPMPSS-----------APRGPTEPALRRPSSADRPLAPGPSSS 220
+R + + +PTP P +S AP G T + PSS+ P +P P
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 221 PG-----AGRAPGAMASPSGSSKAT 240
P PG+ P K T
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTT 244
Score = 29.6 bits (65), Expect = 4.4
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 159 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS 218
PG S+ + P S E P EP A ++ G EP P S + +P P
Sbjct: 195 PGSTSSSPASPSSSPTPASPEPPL-EPAEAQCLTAEVPGSPEP----PPSPPKTTSPEPQ 249
Query: 219 SSPGAGRAPG-----AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 273
SP G ++ P + A RG R + P ++ L +L A
Sbjct: 250 ESPTLPSTEGQVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQRSLSVLSPRQPA 309
Query: 274 Q 274
Q
Sbjct: 310 Q 310
>gi|19913394 smoothelin isoform c [Homo sapiens]
Length = 917
Score = 47.0 bits (110), Expect = 3e-05
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 23/169 (13%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 226
G S +RA + RP + S + P +PA R S+ PLA GPSS AG
Sbjct: 281 GPSDTKRADVAGPRPCQR-------SLSVLSPRQPAQNREST---PLASGPSSFQRAGSV 330
Query: 227 PGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGR 286
+ + S R +DG P+ +TP L A G + P
Sbjct: 331 RDRVHKFTSDSPMAA--RLQDGTPQAALSPLTPARLLGPSLTSTTPASSSSGSSSRGP-- 386
Query: 287 KETGTQTGGDGRGVSDAGAGVRGC---RGCRGRGVGA------AGGSVA 326
+T ++ + RGV+ A +R C G RGRG+ A AGG VA
Sbjct: 387 SDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRGLAARPLENRAGGPVA 435
Score = 34.3 bits (77), Expect = 0.18
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 175 PESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPS 234
P S P+ +P P+S P P EPA + +A+ P +P P SP +P SP+
Sbjct: 195 PGSTSSSPASPSSSPTPAS-PEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPT 253
Score = 32.3 bits (72), Expect = 0.68
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 172 QRAPESNERPAEEPTPAPMPSS-----------APRGPTEPALRRPSSADRPLAPGPSSS 220
+R + + +PTP P +S AP G T + PSS+ P +P P
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 221 PG-----AGRAPGAMASPSGSSKAT 240
P PG+ P K T
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTT 244
Score = 29.6 bits (65), Expect = 4.4
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 159 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS 218
PG S+ + P S E P EP A ++ G EP P S + +P P
Sbjct: 195 PGSTSSSPASPSSSPTPASPEPPL-EPAEAQCLTAEVPGSPEP----PPSPPKTTSPEPQ 249
Query: 219 SSPGAGRAPG-----AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 273
SP G ++ P + A RG R + P ++ L +L A
Sbjct: 250 ESPTLPSTEGQVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQRSLSVLSPRQPA 309
Query: 274 Q 274
Q
Sbjct: 310 Q 310
>gi|19913398 smoothelin isoform a [Homo sapiens]
Length = 940
Score = 47.0 bits (110), Expect = 3e-05
Identities = 51/169 (30%), Positives = 69/169 (40%), Gaps = 18/169 (10%)
Query: 168 ASGQQRAPESNERPAEEPTPAPMPSS-APRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 226
A R P +R A+ P P S + P +PA R S+ PLA GPSS AG
Sbjct: 275 AQSPHRGPSDTKR-ADVAGPRPCQRSLSVLSPRQPAQNREST---PLASGPSSFQRAGSV 330
Query: 227 PGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGR 286
+ + S R +DG P+ +TP L A G + P
Sbjct: 331 RDRVHKFTSDSPMAA--RLQDGTPQAALSPLTPARLLGPSLTSTTPASSSSGSSSRGP-- 386
Query: 287 KETGTQTGGDGRGVSDAGAGVRGC---RGCRGRGVGA------AGGSVA 326
+T ++ + RGV+ A +R C G RGRG+ A AGG VA
Sbjct: 387 SDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRGLAARPLENRAGGPVA 435
Score = 34.3 bits (77), Expect = 0.18
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 175 PESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPS 234
P S P+ +P P+S P P EPA + +A+ P +P P SP +P SP+
Sbjct: 195 PGSTSSSPASPSSSPTPAS-PEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPT 253
Score = 32.3 bits (72), Expect = 0.68
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 172 QRAPESNERPAEEPTPAPMPSS-----------APRGPTEPALRRPSSADRPLAPGPSSS 220
+R + + +PTP P +S AP G T + PSS+ P +P P
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 221 PG-----AGRAPGAMASPSGSSKAT 240
P PG+ P K T
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTT 244
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.6 bits (109), Expect = 4e-05
Identities = 60/220 (27%), Positives = 73/220 (33%), Gaps = 40/220 (18%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 211
G R+ R P G AP S R P + S PR PT + D
Sbjct: 44 GTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDL 103
Query: 212 PLAPGPSSSPG------------AGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTP 259
P P P + G G G + G+ + +GK RG RP+R
Sbjct: 104 PRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQR------- 156
Query: 260 EEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGC-RGCRGRGV 318
R RL G P G APR + G + GV G RG G
Sbjct: 157 --VRSRL---AGLGAPRGGAAAPRGWGGQ-----GAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 319 GAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLG 358
G GG+ P RAR S RP R+ LLG
Sbjct: 207 GGGGGARPSP----------PRARQPPSGRPRPRRTRLLG 236
Score = 37.7 bits (86), Expect = 0.016
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 7/149 (4%)
Query: 105 LPPSAKSINVSGIGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVS 164
L P ++G+G P G GA R W + + G A R G G
Sbjct: 152 LRPQRVRSRLAGLGAPRG----GAAAP-RGWGGQGAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 165 AVGASGQQRAPESNERPAEEPTP--APMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPG 222
G + P + + P+ P P + SA R AL R RP A +SS G
Sbjct: 207 GGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRG 266
Query: 223 AGRAPGAMASPSGSSKATGKPRGRDGRPR 251
G A A+ + R DGR R
Sbjct: 267 RGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 46.6 bits (109), Expect = 4e-05
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 118 GRPSGCNLVGAGRRC-----RAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQ 172
G P+G G R+ P R P LG G RA RRPG ++
Sbjct: 127 GSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPG-------SAALP 179
Query: 173 RAPESNERPAEEPTP-APMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAP--GA 229
R+P S+ R A P P AP P + P A+ P +A +AP P + GA A G
Sbjct: 180 RSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGW 239
Query: 230 MASP 233
+A+P
Sbjct: 240 VAAP 243
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/136 (30%), Positives = 54/136 (39%), Gaps = 22/136 (16%)
Query: 130 RRCRAWPERAWPQAGDSDCLGQGRRA--QRRPGPGVSAVGASGQQRAPESNERPAEEPTP 187
R RA RA P G+GR A +R P PG + +G +RA + +
Sbjct: 89 RASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRS 148
Query: 188 APMPSSAPR------GPTEPALRRPSSADRPLAPGPS------SSPGAGR--APG----- 228
P P G ALRRP SA P +P S PGA R APG
Sbjct: 149 VPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVG 208
Query: 229 -AMASPSGSSKATGKP 243
A+A+P ++ + P
Sbjct: 209 FAVAAPPAAAASVAPP 224
Score = 37.7 bits (86), Expect = 0.016
Identities = 37/124 (29%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 110 KSINVSGIGRPSGCNLVGAGRRCRAWP-ERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGA 168
+S+ + P G +GAG R P A P++ S RR PGPG GA
Sbjct: 147 RSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSS-----RRWAAMPGPGAPRPGA 201
Query: 169 SGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALR-RPSSADR--PLAPGPSSSPGAGR 225
G P AP ++A P PA+ P++A R AP P +PG
Sbjct: 202 PGTW--------PVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTEN 253
Query: 226 APGA 229
AP +
Sbjct: 254 APAS 257
Score = 35.0 bits (79), Expect = 0.11
Identities = 39/146 (26%), Positives = 53/146 (36%), Gaps = 23/146 (15%)
Query: 191 PSSAPRGPTEPALRRPSSA---DRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRD 247
P+ A RG + P + +SA + P A GP P A G P+ +S+A G+ G
Sbjct: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWG---PPARASRAAGRRAGPA 101
Query: 248 GRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGV 307
G P R R R S P +P G + G S AG
Sbjct: 102 GPPCRAPG-------RGRAAATRRSPAPGTARGSP------AGVERAGGATAASSAGTRS 148
Query: 308 RGCR----GCRGRGVGAAGGSVAGPG 329
R C G +GA ++ PG
Sbjct: 149 VPARRLPPPCGGTSLGAGSRALRRPG 174
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.6 bits (109), Expect = 4e-05
Identities = 60/220 (27%), Positives = 73/220 (33%), Gaps = 40/220 (18%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 211
G R+ R P G AP S R P + S PR PT + D
Sbjct: 44 GTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDL 103
Query: 212 PLAPGPSSSPG------------AGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTP 259
P P P + G G G + G+ + +GK RG RP+R
Sbjct: 104 PRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQR------- 156
Query: 260 EEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGC-RGCRGRGV 318
R RL G P G APR + G + GV G RG G
Sbjct: 157 --VRSRL---AGLGAPRGGAAAPRGWGGQ-----GAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 319 GAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLG 358
G GG+ P RAR S RP R+ LLG
Sbjct: 207 GGGGGARPSP----------PRARQPPSGRPRPRRTRLLG 236
Score = 37.7 bits (86), Expect = 0.016
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 7/149 (4%)
Query: 105 LPPSAKSINVSGIGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVS 164
L P ++G+G P G GA R W + + G A R G G
Sbjct: 152 LRPQRVRSRLAGLGAPRG----GAAAP-RGWGGQGAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 165 AVGASGQQRAPESNERPAEEPTP--APMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPG 222
G + P + + P+ P P + SA R AL R RP A +SS G
Sbjct: 207 GGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRG 266
Query: 223 AGRAPGAMASPSGSSKATGKPRGRDGRPR 251
G A A+ + R DGR R
Sbjct: 267 RGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.6 bits (109), Expect = 4e-05
Identities = 60/220 (27%), Positives = 73/220 (33%), Gaps = 40/220 (18%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 211
G R+ R P G AP S R P + S PR PT + D
Sbjct: 44 GTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDL 103
Query: 212 PLAPGPSSSPG------------AGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTP 259
P P P + G G G + G+ + +GK RG RP+R
Sbjct: 104 PRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQR------- 156
Query: 260 EEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGC-RGCRGRGV 318
R RL G P G APR + G + GV G RG G
Sbjct: 157 --VRSRL---AGLGAPRGGAAAPRGWGGQ-----GAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 319 GAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLG 358
G GG+ P RAR S RP R+ LLG
Sbjct: 207 GGGGGARPSP----------PRARQPPSGRPRPRRTRLLG 236
Score = 37.7 bits (86), Expect = 0.016
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 7/149 (4%)
Query: 105 LPPSAKSINVSGIGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVS 164
L P ++G+G P G GA R W + + G A R G G
Sbjct: 152 LRPQRVRSRLAGLGAPRG----GAAAP-RGWGGQGAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 165 AVGASGQQRAPESNERPAEEPTP--APMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPG 222
G + P + + P+ P P + SA R AL R RP A +SS G
Sbjct: 207 GGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRG 266
Query: 223 AGRAPGAMASPSGSSKATGKPRGRDGRPR 251
G A A+ + R DGR R
Sbjct: 267 RGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 46.6 bits (109), Expect = 4e-05
Identities = 62/213 (29%), Positives = 77/213 (36%), Gaps = 27/213 (12%)
Query: 106 PPSAKSINVSGIGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSA 165
P SA S G GR +G GAGRR R R + S RR +RRP P
Sbjct: 366 PRSAPSSQGRG-GRAAG----GAGRRRR---RRRRRRRSRSSASAPRRRGRRRPRPAPPR 417
Query: 166 VGASGQQRAPESNE----RPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSP 221
+ RA S++ R A P P P G + A RP A RP + P SP
Sbjct: 418 GSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRA-RPASTSP--SP 474
Query: 222 GAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDA 281
G A G P G S + R PR +P + R R +P +
Sbjct: 475 G---AHGRRGGPEGKSSS----RSPGPHPRSWSSSRSPSKSRSR----SAEKRPHSPSRS 523
Query: 282 PRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCR 314
P P +K G+GR R R R
Sbjct: 524 PSP-KKPLSRDKDGEGRARHSEAEATRARRRSR 555
Score = 42.7 bits (99), Expect = 5e-04
Identities = 53/218 (24%), Positives = 74/218 (33%), Gaps = 22/218 (10%)
Query: 136 PERAWPQAGDSDCLGQGRRAQ--RRPGPGVSAVGASGQQRAPESNERPAE--EPTPAPMP 191
P R P+ D +R+ R P P + S Q+ A P A P
Sbjct: 275 PSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSP 334
Query: 192 SSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPR 251
P P+ P D+ A P+ +P ++PS + G+ G GR R
Sbjct: 335 PDKPSSPS------PRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRG-GRAAGGAGRRR 387
Query: 252 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 311
R +R R SA G PRP +++ R SD+G+G R
Sbjct: 388 R-------RRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSG----R 436
Query: 312 GCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRP 349
G G G G K ER R + +S P
Sbjct: 437 GAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSP 474
>gi|188536110 leucine rich repeat neuronal 4 [Homo sapiens]
Length = 740
Score = 46.6 bits (109), Expect = 4e-05
Identities = 55/232 (23%), Positives = 86/232 (37%), Gaps = 21/232 (9%)
Query: 50 VYLDKLPRESPLAQLMDSETDMVQQIRALDSDMQTLVYENYDKFIPATEMT-----NSIK 104
+YL K+PR + L + T +QQ+ DS V + + P ++ N
Sbjct: 233 LYLRKMPRLTTLEGDIFKMTPNLQQLDCQDSPALASVATHIFQDTPHLQVLLFQNCNLSS 292
Query: 105 LPP----SAKSINVSGIGRPSGCN------LVGAGRRC--RAWPERAWPQAGDSDCLGQG 152
PP S++ ++++ G P C+ L A R RA P AG S
Sbjct: 293 FPPWTLDSSQVLSINLFGNPLTCSCDLSWLLTDAKRTVLSRAADTMCAPAAGSSGPFSAS 352
Query: 153 RRAQRRPGPGVS----AVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSS 208
+ PG S +GAS S P+ P++ P G + + P+
Sbjct: 353 LSLSQLPGVCQSDQSTTLGASHPPCFNRSTYAQGTTVAPSAAPATRPAGDQQSVSKAPNV 412
Query: 209 ADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPE 260
R +A P S G AP S +G S ++ PR + + PE
Sbjct: 413 GSRTIAAWPHSDAREGTAPSTTNSVAGHSNSSVFPRAASTTRTQHRGEHAPE 464
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 46.2 bits (108), Expect = 5e-05
Identities = 49/194 (25%), Positives = 64/194 (32%), Gaps = 20/194 (10%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSS---APRGPTEPALRRPSS 208
G R QR P GA G + P E P P + P+GP P P
Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP----PGK 813
Query: 209 ADRPLAPGPSSSPG-----AGRAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEE 261
P PG G P + P G++ TG RG G P + P
Sbjct: 814 DGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGT 873
Query: 262 KRLRLLLEEGSAQPDDGEDAPR-----PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG- 315
+ G+D P PG + GG G ++ +G G G G
Sbjct: 874 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGE 933
Query: 316 RGVGAAGGSVAGPG 329
RG +GG + PG
Sbjct: 934 RGAAGSGGPIGPPG 947
Score = 42.7 bits (99), Expect = 5e-04
Identities = 57/202 (28%), Positives = 67/202 (33%), Gaps = 45/202 (22%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA------------ 214
G G Q P + E PM P GP PA P+ AD P
Sbjct: 1067 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA--GPNGADGPQGPPGGVGNLGPPG 1124
Query: 215 ----PGPSSSPGAGRAPGAMA-----------------SPSGSSKATGK--PRGRDGRPR 251
PG S SPG PG P G TG P+G G
Sbjct: 1125 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVG 1184
Query: 252 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 311
D P E R + A+ D GED PG+ + TG +G G G
Sbjct: 1185 FPGDPGPPGEGGPR---GQDGAKGDRGEDG-EPGQPGSPGPTGENGPPGPLGKRGPAGSP 1240
Query: 312 GCRGR--GVGAAG--GSVAGPG 329
G GR G GA G G++ PG
Sbjct: 1241 GSEGRQGGKGAKGDPGAIGAPG 1262
Score = 40.0 bits (92), Expect = 0.003
Identities = 55/218 (25%), Positives = 72/218 (33%), Gaps = 23/218 (10%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 211
G R P ++G G+ P P + P P + P G P +P
Sbjct: 539 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ-GKPGLPGM 597
Query: 212 PLAPGPSSSPGAGRAPGAMAS--PSGSSKATGKP-----------RGRDGRPRREEDDVT 258
P + GP PG PG + PSG G P RG G + +D
Sbjct: 598 PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGF 657
Query: 259 PEEK---RLRLLLEEGSAQPDDGEDAPRPGRKETGT--QTGGDGRGVSDAGAGVRGCRGC 313
P K ++ E GED P + TG G G GV G G
Sbjct: 658 PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGY 717
Query: 314 RGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPR 351
GR GS+ PG + + AR S + PR
Sbjct: 718 PGR--QGPKGSLGFPGFPGASGE--KGARGLSGKSGPR 751
Score = 32.0 bits (71), Expect = 0.89
Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 41/183 (22%)
Query: 161 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS-- 218
PG+ G G + P + P P+ RGP A P S P PG S
Sbjct: 307 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRA-GLPGSDGAPGPPGTSLM 365
Query: 219 -----SSPGAGRAPG-----------------AMASPSGSSKATGKPR--GRDGRP--RR 252
S G + P A+ P G TG+P G+ G P +
Sbjct: 366 LPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKG 425
Query: 253 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 312
E D+ P+ R +G P PG+ + G DG GV+G RG
Sbjct: 426 ESGDLGPQGPRG----PQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKGDRG 473
Query: 313 CRG 315
G
Sbjct: 474 FDG 476
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 46.2 bits (108), Expect = 5e-05
Identities = 49/194 (25%), Positives = 64/194 (32%), Gaps = 20/194 (10%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSS---APRGPTEPALRRPSS 208
G R QR P GA G + P E P P + P+GP P P
Sbjct: 737 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP----PGK 792
Query: 209 ADRPLAPGPSSSPG-----AGRAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEE 261
P PG G P + P G++ TG RG G P + P
Sbjct: 793 DGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGT 852
Query: 262 KRLRLLLEEGSAQPDDGEDAPR-----PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG- 315
+ G+D P PG + GG G ++ +G G G G
Sbjct: 853 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGE 912
Query: 316 RGVGAAGGSVAGPG 329
RG +GG + PG
Sbjct: 913 RGAAGSGGPIGPPG 926
Score = 42.7 bits (99), Expect = 5e-04
Identities = 57/202 (28%), Positives = 67/202 (33%), Gaps = 45/202 (22%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA------------ 214
G G Q P + E PM P GP PA P+ AD P
Sbjct: 1046 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA--GPNGADGPQGPPGGVGNLGPPG 1103
Query: 215 ----PGPSSSPGAGRAPGAMA-----------------SPSGSSKATGK--PRGRDGRPR 251
PG S SPG PG P G TG P+G G
Sbjct: 1104 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVG 1163
Query: 252 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 311
D P E R + A+ D GED PG+ + TG +G G G
Sbjct: 1164 FPGDPGPPGEGGPR---GQDGAKGDRGEDG-EPGQPGSPGPTGENGPPGPLGKRGPAGSP 1219
Query: 312 GCRGR--GVGAAG--GSVAGPG 329
G GR G GA G G++ PG
Sbjct: 1220 GSEGRQGGKGAKGDPGAIGAPG 1241
Score = 40.0 bits (92), Expect = 0.003
Identities = 55/218 (25%), Positives = 72/218 (33%), Gaps = 23/218 (10%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 211
G R P ++G G+ P P + P P + P G P +P
Sbjct: 518 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ-GKPGLPGM 576
Query: 212 PLAPGPSSSPGAGRAPGAMAS--PSGSSKATGKP-----------RGRDGRPRREEDDVT 258
P + GP PG PG + PSG G P RG G + +D
Sbjct: 577 PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGF 636
Query: 259 PEEK---RLRLLLEEGSAQPDDGEDAPRPGRKETGT--QTGGDGRGVSDAGAGVRGCRGC 313
P K ++ E GED P + TG G G GV G G
Sbjct: 637 PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGY 696
Query: 314 RGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPR 351
GR GS+ PG + + AR S + PR
Sbjct: 697 PGR--QGPKGSLGFPGFPGASGE--KGARGLSGKSGPR 730
Score = 32.0 bits (71), Expect = 0.89
Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 41/183 (22%)
Query: 161 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS-- 218
PG+ G G + P + P P+ RGP A P S P PG S
Sbjct: 286 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRA-GLPGSDGAPGPPGTSLM 344
Query: 219 -----SSPGAGRAPG-----------------AMASPSGSSKATGKPR--GRDGRP--RR 252
S G + P A+ P G TG+P G+ G P +
Sbjct: 345 LPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKG 404
Query: 253 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 312
E D+ P+ R +G P PG+ + G DG GV+G RG
Sbjct: 405 ESGDLGPQGPRG----PQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKGDRG 452
Query: 313 CRG 315
G
Sbjct: 453 FDG 455
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 46.2 bits (108), Expect = 5e-05
Identities = 49/194 (25%), Positives = 64/194 (32%), Gaps = 20/194 (10%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSS---APRGPTEPALRRPSS 208
G R QR P GA G + P E P P + P+GP P P
Sbjct: 844 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP----PGK 899
Query: 209 ADRPLAPGPSSSPG-----AGRAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEE 261
P PG G P + P G++ TG RG G P + P
Sbjct: 900 DGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGT 959
Query: 262 KRLRLLLEEGSAQPDDGEDAPR-----PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG- 315
+ G+D P PG + GG G ++ +G G G G
Sbjct: 960 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGE 1019
Query: 316 RGVGAAGGSVAGPG 329
RG +GG + PG
Sbjct: 1020 RGAAGSGGPIGPPG 1033
Score = 42.7 bits (99), Expect = 5e-04
Identities = 57/202 (28%), Positives = 67/202 (33%), Gaps = 45/202 (22%)
Query: 167 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA------------ 214
G G Q P + E PM P GP PA P+ AD P
Sbjct: 1153 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA--GPNGADGPQGPPGGVGNLGPPG 1210
Query: 215 ----PGPSSSPGAGRAPGAMA-----------------SPSGSSKATGK--PRGRDGRPR 251
PG S SPG PG P G TG P+G G
Sbjct: 1211 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVG 1270
Query: 252 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 311
D P E R + A+ D GED PG+ + TG +G G G
Sbjct: 1271 FPGDPGPPGEGGPR---GQDGAKGDRGEDG-EPGQPGSPGPTGENGPPGPLGKRGPAGSP 1326
Query: 312 GCRGR--GVGAAG--GSVAGPG 329
G GR G GA G G++ PG
Sbjct: 1327 GSEGRQGGKGAKGDPGAIGAPG 1348
Score = 40.0 bits (92), Expect = 0.003
Identities = 55/218 (25%), Positives = 72/218 (33%), Gaps = 23/218 (10%)
Query: 152 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 211
G R P ++G G+ P P + P P + P G P +P
Sbjct: 625 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ-GKPGLPGM 683
Query: 212 PLAPGPSSSPGAGRAPGAMAS--PSGSSKATGKP-----------RGRDGRPRREEDDVT 258
P + GP PG PG + PSG G P RG G + +D
Sbjct: 684 PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGF 743
Query: 259 PEEK---RLRLLLEEGSAQPDDGEDAPRPGRKETGT--QTGGDGRGVSDAGAGVRGCRGC 313
P K ++ E GED P + TG G G GV G G
Sbjct: 744 PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGY 803
Query: 314 RGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPR 351
GR GS+ PG + + AR S + PR
Sbjct: 804 PGR--QGPKGSLGFPGFPGASGE--KGARGLSGKSGPR 837
Score = 32.0 bits (71), Expect = 0.89
Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 41/183 (22%)
Query: 161 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS-- 218
PG+ G G + P + P P+ RGP A P S P PG S
Sbjct: 393 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRA-GLPGSDGAPGPPGTSLM 451
Query: 219 -----SSPGAGRAPG-----------------AMASPSGSSKATGKPR--GRDGRP--RR 252
S G + P A+ P G TG+P G+ G P +
Sbjct: 452 LPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKG 511
Query: 253 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 312
E D+ P+ R +G P PG+ + G DG GV+G RG
Sbjct: 512 ESGDLGPQGPRG----PQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKGDRG 559
Query: 313 CRG 315
G
Sbjct: 560 FDG 562
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 46.2 bits (108), Expect = 5e-05
Identities = 57/221 (25%), Positives = 85/221 (38%), Gaps = 31/221 (14%)
Query: 141 PQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTE 200
P A DSD A +P P A AS + S++ P PRG
Sbjct: 229 PSASDSDSKADSDGA--KPEPVAMARSASSSSSSSSSSDSDVSVKKP-------PRG--- 276
Query: 201 PALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS--------KATGKPRGRDGRPRR 252
R+P A++PL P R P + +S S S K + R R+ RR
Sbjct: 277 ---RKP--AEKPLPKPRGRKPKPERPPSSSSSDSDSDEVDRISEWKRRDEARRRELEARR 331
Query: 253 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 312
+ +E+ LR L E+ + + + G E G+ G G + + V+ RG
Sbjct: 332 RRE----QEEELRRLREQEKEEKERRRERADRGEAERGSG-GSSGDELREDDEPVKK-RG 385
Query: 313 CRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQ 353
+GRG G S + P +L E + + SS P R+
Sbjct: 386 RKGRGRGPPSSSDSEPEAELEREAKKSAKKPQSSSTEPARK 426
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,176,149
Number of Sequences: 37866
Number of extensions: 1325851
Number of successful extensions: 18083
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 1817
Number of HSP's that attempted gapping in prelim test: 9598
Number of HSP's gapped (non-prelim): 7586
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.