Guide to the Human Genome
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Name: LRRN4 Sequence: fasta or formatted (740aa) NCBI GI: 188536110
Description:

leucine rich repeat neuronal 4

Referenced in:

Fibronectin Family
Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         79           2
 C cysteine            3.2         24           1
 D aspartate           4.2         31           2
 E glutamate           3.6         27           4
 F phenylalanine       2.3         17           1
 G glycine             7.2         53           2
 H histidine           2.6         19           1
 I isoleucine          1.8         13           1
 K lysine              1.5         11           1
 L leucine            13.8        102           4
 M methionine          0.5          4           1
 N asparagine          3.0         22           1
 P proline             8.9         66           2
 Q glutamine           5.1         38           2
 R arginine            6.1         45           2
 S serine              9.9         73           2
 T threonine           7.8         58           2
 V valine              4.6         34           2
 W tryptophan          1.6         12           1
 Y tyrosine            1.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat neuronal 4 
LRRN4CL               0.058   LRRN4 C-terminal like 
LRRC4B                0.045   leucine rich repeat containing 4B 
LRRN2                 0.040   leucine rich repeat neuronal 2 
LRRN2                 0.040   leucine rich repeat neuronal 2 
LRRC4C                0.038   netrin-G1 ligand 
CHADL                 0.036   chondroadherin-like 
LRRC4                 0.035   leucine rich repeat containing 4 
LRRC26                0.035   leucine rich repeat containing 26 
LRRN3                 0.035   leucine rich repeat neuronal 3 
LRRN3                 0.035   leucine rich repeat neuronal 3 
LRRN3                 0.035   leucine rich repeat neuronal 3 
MFHAS1                0.034   malignant fibrous histiocytoma amplified sequence 1...
LINGO4                0.033   leucine rich repeat and Ig domain containing 4 [Homo...
KIAA0644              0.032   hypothetical protein LOC9865 
LRRC15                0.032   leucine rich repeat containing 15 isoform a 
LRRC15                0.032   leucine rich repeat containing 15 isoform b 
CPN2                  0.032   carboxypeptidase N, polypeptide 2, 83kD 
TSKU                  0.031   tsukushin 
NYX                   0.028   nyctalopin precursor 
LINGO3                0.028   leucine rich repeat and Ig domain containing 3 [Hom...
AMIGO2                0.028   adhesion molecule with Ig-like domain 2 
AMIGO2                0.028   adhesion molecule with Ig-like domain 2 
AMIGO3                0.027   adhesion molecule with Ig-like domain 3 
LRRTM2                0.027   leucine rich repeat transmembrane neuronal 2 
PODN                  0.027   podocan 
LRIG3                 0.027   leucine-rich repeats and immunoglobulin-like domains...
LRRC32                0.027   leucine rich repeat containing 32 precursor 
LRRC32                0.027   leucine rich repeat containing 32 precursor 
LRRTM1                0.026   leucine rich repeat transmembrane neuronal 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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