Guide to the Human Genome
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Name: LOC100288238 Sequence: fasta or formatted (239aa) NCBI GI: 239743690
Description:

PREDICTED: hypothetical protein XP_002342947

Not currently referenced in the text

Other entries for this name:
alt mRNA {239aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         20           2
 C cysteine            1.3          3           1
 D aspartate           5.0         12           1
 E glutamate           3.3          8           1
 F phenylalanine       3.3          8           1
 G glycine            13.0         31           2
 H histidine           2.1          5           1
 I isoleucine          2.5          6           2
 K lysine              2.1          5           2
 L leucine             9.6         23           3
 M methionine          0.4          1           1
 N asparagine          1.7          4           1
 P proline            12.1         29           5
 Q glutamine           3.8          9           1
 R arginine           11.7         28           2
 S serine              9.2         22           2
 T threonine           5.4         13           1
 V valine              2.9          7           1
 W tryptophan          1.7          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342947 
LOC100293814          1.000   PREDICTED: hypothetical protein 
LOC100288238          1.000   PREDICTED: hypothetical protein 
LOC100130255          0.034   PREDICTED: hypothetical protein 
LOC100130255          0.034   PREDICTED: hypothetical protein 
LOC100130255          0.034   PREDICTED: hypothetical protein 
LOC339192             0.032   PREDICTED: hypothetical protein 
LOC339192             0.032   PREDICTED: hypothetical protein 
LOC339192             0.032   PREDICTED: hypothetical protein 
COL21A1               0.030   collagen, type XXI, alpha 1 precursor 
EMID1                 0.030   EMI domain containing 1 
COL7A1                0.025   alpha 1 type VII collagen precursor 
FLJ37078              0.021   hypothetical protein LOC222183 
LOC100290812          0.021   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.021   PREDICTED: hypothetical protein XP_002343496 
COL3A1                0.021   collagen type III alpha 1 preproprotein 
LOC100293975          0.021   PREDICTED: hypothetical protein 
C19orf61              0.021   hypothetical protein LOC56006 
COL9A3                0.021   alpha 3 type IX collagen 
C1QTNF9B              0.019   C1q and tumor necrosis factor related protein 9B [Ho...
LOC388279             0.019   PREDICTED: hypothetical protein 
LOC65998              0.017   hypothetical protein LOC65998 
CABP1                 0.017   calcium binding protein 1 isoform 3 
SCARA3                0.017   scavenger receptor class A, member 3 isoform 1 [Homo...
SRRM1                 0.017   serine/arginine repetitive matrix 1 
COL5A1                0.015   alpha 1 type V collagen preproprotein 
MYO15A                0.015   myosin XV 
HOXA10                0.015   homeobox A10 isoform a 
LOC100287063          0.015   PREDICTED: hypothetical protein XP_002342368 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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