Guide to the Human Genome
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Name: LOC100130255 Sequence: fasta or formatted (173aa) NCBI GI: 169201345
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {173aa} PREDICTED: hypothetical protein
alt mRNA {173aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         23           2
 C cysteine            3.5          6           2
 D aspartate           0.6          1           1
 E glutamate           4.0          7           1
 F phenylalanine       0.0          0           0
 G glycine            17.3         30           2
 H histidine           0.6          1           1
 I isoleucine          1.2          2           1
 K lysine              3.5          6           1
 L leucine             5.2          9           2
 M methionine          0.6          1           1
 N asparagine          1.2          2           1
 P proline            12.1         21           3
 Q glutamine           2.9          5           1
 R arginine           14.5         25           2
 S serine              8.1         14           2
 T threonine           4.6          8           1
 V valine              5.2          9           1
 W tryptophan          1.7          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130255          1.000   PREDICTED: hypothetical protein 
LOC100130255          1.000   PREDICTED: hypothetical protein 
LOC100292184          0.062   PREDICTED: hypothetical protein 
TBC1D10B              0.056   TBC1 domain family, member 10B 
C14orf104             0.056   kintoun isoform 2 
C14orf104             0.056   kintoun isoform 1 
LOC100293814          0.047   PREDICTED: hypothetical protein 
LOC100288238          0.047   PREDICTED: hypothetical protein 
LOC100288238          0.047   PREDICTED: hypothetical protein XP_002342947 
LOC400236             0.047   PREDICTED: hypothetical protein 
LOC400236             0.047   PREDICTED: hypothetical protein 
COL3A1                0.042   collagen type III alpha 1 preproprotein 
LOC100130128          0.042   PREDICTED: hypothetical protein 
LOC100130128          0.042   PREDICTED: hypothetical protein 
LOC100130128          0.042   PREDICTED: hypothetical protein 
COL1A1                0.042   alpha 1 type I collagen preproprotein 
LOC100131455          0.042   PREDICTED: hypothetical protein 
LOC100131455          0.042   PREDICTED: hypothetical protein 
LOC100131455          0.042   PREDICTED: hypothetical protein 
LOC728767             0.039   PREDICTED: hypothetical protein 
LOC728767             0.039   PREDICTED: hypothetical protein 
ATXN2                 0.039   ataxin 2 
BSN                   0.039   bassoon protein 
COL2A1                0.039   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.039   collagen, type II, alpha 1 isoform 2 precursor [Hom...
BBC3                  0.039   BCL2 binding component 3 isoform 1 
COL4A4                0.039   alpha 4 type IV collagen precursor 
PAK4                  0.039   p21-activated kinase 4 isoform 2 
PAK4                  0.039   p21-activated kinase 4 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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