Guide to the Human Genome
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Name: C19orf61 Sequence: fasta or formatted (520aa) NCBI GI: 145301567
Description:

hypothetical protein LOC56006

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         36           2
 C cysteine            0.8          4           1
 D aspartate           4.2         22           2
 E glutamate           6.7         35           2
 F phenylalanine       3.3         17           2
 G glycine             6.5         34           2
 H histidine           2.5         13           1
 I isoleucine          3.7         19           2
 K lysine              4.2         22           1
 L leucine             9.2         48           2
 M methionine          3.7         19           1
 N asparagine          2.5         13           2
 P proline            10.8         56           4
 Q glutamine           5.4         28           1
 R arginine            6.2         32           4
 S serine              9.2         48           5
 T threonine           4.8         25           1
 V valine              5.6         29           2
 W tryptophan          1.2          6           1
 Y tyrosine            2.7         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC56006 
MED25                 0.031   mediator complex subunit 25 
NCOR2                 0.026   nuclear receptor co-repressor 2 isoform 2 
WIPF3                 0.024   WAS/WASL interacting protein family, member 3 [Homo...
WASL                  0.024   Wiskott-Aldrich syndrome gene-like protein 
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Hom...
NCOR2                 0.023   nuclear receptor co-repressor 2 isoform 1 
BRD4                  0.022   bromodomain-containing protein 4 isoform short 
BRD4                  0.022   bromodomain-containing protein 4 isoform long 
MLL4                  0.022   myeloid/lymphoid or mixed-lineage leukemia 4 
PHF23                 0.021   PHD finger protein 23 
SFPQ                  0.021   splicing factor proline/glutamine rich (polypyrimidin...
TAF4                  0.021   TBP-associated factor 4 
CREBBP                0.021   CREB binding protein isoform b 
CREBBP                0.021   CREB binding protein isoform a 
DACT3                 0.021   thymus expressed gene 3-like 
SAMD1                 0.021   sterile alpha motif domain containing 1 
UTF1                  0.020   undifferentiated embryonic cell transcription factor...
WASF2                 0.020   WAS protein family, member 2 
MINK1                 0.020   misshapen/NIK-related kinase isoform 4 
PRB2                  0.020   proline-rich protein BstNI subfamily 2 
C6orf132              0.019   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.019   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.019   PREDICTED: hypothetical protein LOC647024 
ZFHX4                 0.019   zinc finger homeodomain 4 
LOC646509             0.019   PREDICTED: hypothetical protein 
MINK1                 0.019   misshapen/NIK-related kinase isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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