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Search of human proteins with 239743123
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 255 5e-69
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 218 9e-58
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 218 9e-58
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 50 4e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 1e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 49 1e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 49 1e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 49 1e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 3e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 4e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 4e-06
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 47 5e-06
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 45 1e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 45 1e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 45 1e-05
gi|119220564 one cut domain, family member 2 [Homo sapiens] 45 1e-05
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 45 2e-05
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 45 2e-05
gi|13994287 BTE-binding protein 4 [Homo sapiens] 44 2e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 2e-05
gi|134019487 chromatin modifying protein 1A isoform 1 [Homo sapi... 44 3e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 43 5e-05
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 43 5e-05
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 43 5e-05
gi|194363768 homeobox D9 [Homo sapiens] 43 7e-05
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 42 9e-05
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 42 9e-05
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 42 9e-05
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 42 9e-05
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 42 1e-04
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 255 bits (652), Expect = 5e-69
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MLCPKYQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEP 60
MLCPKYQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEP
Sbjct: 1 MLCPKYQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEP 60
Query: 61 APKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
APKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE
Sbjct: 61 APKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
Query: 121 PER 123
PER
Sbjct: 121 PER 123
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 218 bits (555), Expect = 9e-58
Identities = 109/118 (92%), Positives = 111/118 (94%), Gaps = 1/118 (0%)
Query: 7 QPVLAAETLN-NHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF 65
QP A E + + KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF
Sbjct: 37 QPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF 96
Query: 66 QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123
QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER
Sbjct: 97 QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 154
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 218 bits (555), Expect = 9e-58
Identities = 109/118 (92%), Positives = 111/118 (94%), Gaps = 1/118 (0%)
Query: 7 QPVLAAETLN-NHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF 65
QP A E + + KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF
Sbjct: 37 QPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF 96
Query: 66 QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123
QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER
Sbjct: 97 QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 154
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 50.1 bits (118), Expect = 4e-07
Identities = 35/124 (28%), Positives = 44/124 (35%), Gaps = 15/124 (12%)
Query: 13 ETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGR----------PCGRRRHPQAEPAP 62
E NH GGGGGGG+GG+ GG G G SG P R P P P
Sbjct: 2285 EYQRNHSGGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQP 2344
Query: 63 KEFQ-----GDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSS 117
A+++A+A ++ P P E+ S R PG
Sbjct: 2345 VRHHPPVLVSSAASSQAEADKMSGTSTPGPSLPPPGAAPEAGPSAPSRRPPGADAEGSER 2404
Query: 118 AGEP 121
EP
Sbjct: 2405 EAEP 2408
Score = 26.9 bits (58), Expect = 3.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 25 GGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARA 74
G +GGA A +G A + +G CG AE A K+ A R+
Sbjct: 3 GSSGGAAAPAASSGPAAAASAAGSGCGGGAGEGAEEAAKDLADIAAFFRS 52
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 48.5 bits (114), Expect = 1e-06
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
+GG G G GA+G AG G A ER G P G P+ P G+ A LT
Sbjct: 487 RGGPGSRGFPGADGVAGPKGPAGERGSPG-PAG----PKGSPGEAGRPGEAGLPGAKGLT 541
Query: 79 A--------GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
GK+ P P G+ G G + PG + +AGEP
Sbjct: 542 GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEP 592
Score = 45.4 bits (106), Expect = 1e-05
Identities = 34/117 (29%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR--------------PCGRRRHPQAEPAPKEF 65
G G G GA+G G AG A ER E G P G P + P +
Sbjct: 608 GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDL 667
Query: 66 QGDG-AAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G + AR + G+ P G G RG A + + PGA S G P
Sbjct: 668 GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 724
Score = 43.5 bits (101), Expect = 4e-05
Identities = 37/107 (34%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAP-----KEFQG-DGAAA 72
+G G G G +G AG GR ER G P G R P P + F G DGA
Sbjct: 220 RGPPGPPGKNGDDGEAGKPGRPGERGPPG-PQGARGLPGTAGLPGMKGHRGFSGLDGA-- 276
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
+ DA AG EP GE G G+ ER PG + G
Sbjct: 277 KGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARG 323
Score = 43.5 bits (101), Expect = 4e-05
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G GA G G AGR SG P P P +G G R +
Sbjct: 862 KGARGSAGPPGATGFPGAAGRVGPPGPSG-----NAGPPGPPGPAGKEG-GKGPRGETGP 915
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
AG+ E P G G GE+ + + PG + AG+
Sbjct: 916 AGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ 957
Score = 41.6 bits (96), Expect = 2e-04
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR--------PCGRR-----RHPQAEPAPKEFQ 66
G G GA GA G G AG++ +R E+G P G R + P+ + Q
Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQ 1102
Query: 67 GDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
GD + +G P P G GE+G AS R P GA G
Sbjct: 1103 GD-RGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDG 1154
Score = 40.8 bits (94), Expect = 3e-04
Identities = 37/105 (35%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA GA G AG G R SG P G P P PK G+ A + T
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSG-PQG----PGGPPGPKGNSGEPGAPGSKGDTG 446
Query: 80 GKSAEPAP---GGEGGERGEESASERESERAPGRGPGARSSAGEP 121
K EP P G G GEE E P PG G P
Sbjct: 447 AKG-EPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGP 490
Score = 40.0 bits (92), Expect = 4e-04
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRP--------CGRRRHPQAEPAPKEFQ 66
+ H+G G GA G G AG G E+G P G R P A P P +
Sbjct: 264 MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGA-PGPAGAR 322
Query: 67 GDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G+ A A AG P G G G A + P G + GEP
Sbjct: 323 GNDGATGA----AGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373
Score = 39.3 bits (90), Expect = 8e-04
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G GA G G G + + G P + EP +GD A+ +
Sbjct: 397 KGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGN--SGEPGAPGSKGD-TGAKGEPGP 453
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPG-----RGPGARSSAG 119
G P P GE G+RG + E PG GPG+R G
Sbjct: 454 VGVQGPPGPAGEEGKRG--ARGEPGPTGLPGPPGERGGPGSRGFPG 497
Score = 38.5 bits (88), Expect = 0.001
Identities = 32/109 (29%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G G G G G + R E G P R Q P P +G A D
Sbjct: 653 GEAGKPGEQGVPGDLGAPGPSGARGERGFP--GERGVQGPPGPAGPRGANGAPGNDGAKG 710
Query: 80 GKSAEPAPGGEG--------GERGEESASERESERAPGRGPGARSSAGE 120
A APG +G GERG + +R GA S G+
Sbjct: 711 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGK 759
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
+G G G G +G AG G+A ER G P PA K+ +
Sbjct: 574 RGQAGVMGFPGPKGAAGEPGKAGERGVPGPP------GAVGPAGKDGE------------ 615
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
AG P P G GERGE+ + + G AG+P
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKP 658
Score = 37.7 bits (86), Expect = 0.002
Identities = 33/116 (28%), Positives = 38/116 (32%), Gaps = 12/116 (10%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQAE--------PAPKEFQGDG 69
G G G G G G AGR E G P G + P A+ P P+ G
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR 958
Query: 70 AAARADALTA--GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123
G P P GE G++G AS P PG GE R
Sbjct: 959 GVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR 1014
Score = 37.0 bits (84), Expect = 0.004
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 3/102 (2%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G G G AG AG G P + A P P GAA R
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGP-PGATGFPGAAGRVGP--P 886
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G S P G G G+E E P PG G P
Sbjct: 887 GPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP 928
Score = 37.0 bits (84), Expect = 0.004
Identities = 36/122 (29%), Positives = 40/122 (32%), Gaps = 20/122 (16%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRH-------PQAEPAPKEFQGDGAA 71
KG G G GA G G G A +R G P R P EP K+ +
Sbjct: 934 KGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG-KQGPSGASG 992
Query: 72 ARADALTAG----------KSAEPAPGGEG--GERGEESASERESERAPGRGPGARSSAG 119
R G E APG EG G G A E P PGA + G
Sbjct: 993 ERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG 1052
Query: 120 EP 121
P
Sbjct: 1053 AP 1054
Score = 35.8 bits (81), Expect = 0.008
Identities = 35/121 (28%), Positives = 40/121 (33%), Gaps = 20/121 (16%)
Query: 20 GGGGGGGAGGAEGGAG--------------GAGRARERAESGRPCGRR-----RHPQAEP 60
G G G GA G AG GA A+ A P G R P
Sbjct: 317 GPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPP 376
Query: 61 APKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
P G AD K A AP G G G A + PG PG + ++GE
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAP-GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE 435
Query: 121 P 121
P
Sbjct: 436 P 436
Score = 35.8 bits (81), Expect = 0.008
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA G +G +G +G A G P G R P P P F G
Sbjct: 770 GPPGPAGAPGDKGESGPSGPAGPTGARGAP-GDRGEP-GPPGPAGFAGP----------P 817
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G +P GE G+ G + + P PG + G P
Sbjct: 818 GADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP 859
Score = 35.0 bits (79), Expect = 0.014
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 56 PQAEPAPKEFQGDGAAARADALTA--GKSAEPAPGGEGGERGEESASERESERAPGRGPG 113
P P P+ FQG + G P P G+ G+ GE R ER P G
Sbjct: 192 PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG 251
Query: 114 ARSSAG 119
AR G
Sbjct: 252 ARGLPG 257
Score = 33.5 bits (75), Expect = 0.042
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G G G G AG ++ ESG P G A AP + G A
Sbjct: 758 GKDGVRGLTGPIGPPGPAGAPGDKGESG-PSGPAGPTGARGAPGDRGEPGPPG-----PA 811
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G + P G+ G +GE + + + P PG AG P
Sbjct: 812 GFAGPPGADGQPGAKGEPGDAGAKGDAGP---PGPAGPAGPP 850
Score = 32.0 bits (71), Expect = 0.12
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAA-RADALT 78
G G GA G+ G G G +R E+G P G P A AP G + R +
Sbjct: 1013 GREGAPGAEGSPGRDGSPGAKGDRGETG-PAGPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071
Query: 79 AGKSAEPAP------GGEGGERGEESASERESERAPGRGPGARSSAGEP 121
AG + P G G RG++ + + +R G G P
Sbjct: 1072 AGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPP 1120
Score = 29.3 bits (64), Expect = 0.79
Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 26/143 (18%)
Query: 2 LCPKYQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPA 61
+CP + +G G G G G AG GR + G P P P
Sbjct: 94 VCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLP--GPPGPPGPPG 151
Query: 62 PKEFQGDGAAARA---DALTAGKSAEP----------------APGGEG-----GERGEE 97
P G+ A + D + G + P APG +G GE GE
Sbjct: 152 PPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEP 211
Query: 98 SASERESERAPGRGPGARSSAGE 120
AS R P PG GE
Sbjct: 212 GASGPMGPRGPPGPPGKNGDDGE 234
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 48.5 bits (114), Expect = 1e-06
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G+ G +G G G ER E G G+ P P PK GD + +
Sbjct: 1126 KGEPGESGSPGIQGEPGVKGPRGERGEKGES-GQPGEP-GPPGPKGPTGDDGP-KGNPGP 1182
Query: 79 AGKSAEPAPGGEGGERGEESA-SERESERAPGRGPGARSSAGE 120
G +P P GEGG RG++ A +R + PG+ PG+ GE
Sbjct: 1183 VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ-PGSPGPTGE 1224
Score = 37.0 bits (84), Expect = 0.004
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG----DG----A 70
+G G G GA+G +GG G E G P + P P PK G DG
Sbjct: 763 RGPRGATGKSGAKGTSGGDGPHGPPGERGLP--GPQGPNGFPGPKGPPGPPGKDGLPGHP 820
Query: 71 AARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
R + GK+ P P G G +G + ER PG G P
Sbjct: 821 GQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 871
Score = 35.0 bits (79), Expect = 0.014
Identities = 37/126 (29%), Positives = 44/126 (34%), Gaps = 24/126 (19%)
Query: 20 GGGGGGGAGGAEGGAGGAGRA-----RERAESGRPCGR--RRHPQAEPA-------PKEF 65
G GG G G EG +G G A R A SG P G R PQ P P E
Sbjct: 908 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 967
Query: 66 QGDGAAAR----------ADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGAR 115
G R A G + E GE G+ G++ + E P PG
Sbjct: 968 GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI 1027
Query: 116 SSAGEP 121
G+P
Sbjct: 1028 GPVGQP 1033
Score = 35.0 bits (79), Expect = 0.014
Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR-----PCGRR--RHPQAEPAPKEFQGDGAAA 72
G GG G G G G G A E+ G P GR + P P P G A
Sbjct: 938 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPA---GPPGVA 994
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
D G+ +P G G +GE P PGA + GEP
Sbjct: 995 GEDG-DKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEP 1042
Score = 34.3 bits (77), Expect = 0.024
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA G +G G +G++ R E G P G P+ + P+ GA ++ A
Sbjct: 728 GFPGFPGASGEKGARGLSGKSGPRGERG-PTG----PRGQRGPR-----GATGKSGA--K 775
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G S P G GERG + P PG + G P
Sbjct: 776 GTSGGDGPHGPPGERG------LPGPQGPNGFPGPKGPPGPP 811
Score = 33.1 bits (74), Expect = 0.054
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA GA G G G +R G P P K +GD
Sbjct: 449 GRRGRAGADGARGMPGDPGVKGDRGFDGLP--------GLPGEKGHRGD----------T 490
Query: 80 GKSAEPAPGGEGGERGEE 97
G P P GE GERG++
Sbjct: 491 GAQGLPGPPGEDGERGDD 508
Score = 32.0 bits (71), Expect = 0.12
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP----CGRRRHPQAEPAPKEFQGDGAAARAD 75
G G G G G G G E+ + G P R+ P+ F G A
Sbjct: 683 GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGAR 742
Query: 76 ALT--AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
L+ +G E P G G+RG A+ + + G G GE
Sbjct: 743 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 789
Score = 31.6 bits (70), Expect = 0.16
Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 18 HKGGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRR-----RHPQAEPAPKEFQG-DG 69
H+G G G G G G G E G P G R + P P P +G DG
Sbjct: 486 HRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDG 545
Query: 70 AAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
+L G EP P G+ G G + + P G + G P
Sbjct: 546 PQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP 595
Score = 31.6 bits (70), Expect = 0.16
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 24/101 (23%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G GG G G G E E G+P P P
Sbjct: 1187 GDPGPPGEGGPRGQDGAKGDRGEDGEPGQP--------GSPGP----------------T 1222
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
G++ P P G+ G G + R+ + PGA + G+
Sbjct: 1223 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGK 1263
Score = 30.8 bits (68), Expect = 0.27
Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEP--APKEFQGDGAAARADA 76
+G G G G G G G R ++G G + HP P QG+
Sbjct: 1291 QGRPGATGQAGPPGPVGPPGLPGLRGDAGAK-GEKGHPGLIGLIGPPGEQGE-------- 1341
Query: 77 LTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G P P G G++GE PG PG AG
Sbjct: 1342 --KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1382
Score = 30.4 bits (67), Expect = 0.35
Identities = 32/124 (25%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRP-----------CGRRRHP----QAEPAPK 63
+GG G G GA G G G +G+P G++ P QA P
Sbjct: 1246 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP 1305
Query: 64 EFQGDGAAARADALTAGKSAEP------APGGEGGERGEESASERESERAPGRGPGARSS 117
R DA G+ P P GE GE+G+ P PG +
Sbjct: 1306 VGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP------GPQGSPGQKGE 1359
Query: 118 AGEP 121
G P
Sbjct: 1360 MGIP 1363
Score = 30.0 bits (66), Expect = 0.46
Identities = 28/107 (26%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARA 74
L G G G G G G G E+ + G P PQ P K G
Sbjct: 1314 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP-----GPQGSPGQKGEMG------- 1361
Query: 75 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G S PGG G G + PG G + G P
Sbjct: 1362 ---IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPP 1405
Score = 26.2 bits (56), Expect = 6.7
Identities = 28/104 (26%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHP--QAEPAPKEFQGDGA--AARAD 75
G G G G +G G GR + G P G P E K GD + +
Sbjct: 956 GAAGEKGVPGEKGPIGPTGRDGVQGPVGLP-GPAGPPGVAGEDGDKGEVGDPGQKGTKGN 1014
Query: 76 ALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G P P G G+ G A R P GA+ G
Sbjct: 1015 KGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEG 1058
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 48.5 bits (114), Expect = 1e-06
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G+ G +G G G ER E G G+ P P PK GD + +
Sbjct: 1105 KGEPGESGSPGIQGEPGVKGPRGERGEKGES-GQPGEP-GPPGPKGPTGDDGP-KGNPGP 1161
Query: 79 AGKSAEPAPGGEGGERGEESA-SERESERAPGRGPGARSSAGE 120
G +P P GEGG RG++ A +R + PG+ PG+ GE
Sbjct: 1162 VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ-PGSPGPTGE 1203
Score = 37.0 bits (84), Expect = 0.004
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG----DG----A 70
+G G G GA+G +GG G E G P + P P PK G DG
Sbjct: 742 RGPRGATGKSGAKGTSGGDGPHGPPGERGLP--GPQGPNGFPGPKGPPGPPGKDGLPGHP 799
Query: 71 AARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
R + GK+ P P G G +G + ER PG G P
Sbjct: 800 GQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 850
Score = 35.0 bits (79), Expect = 0.014
Identities = 37/126 (29%), Positives = 44/126 (34%), Gaps = 24/126 (19%)
Query: 20 GGGGGGGAGGAEGGAGGAGRA-----RERAESGRPCGR--RRHPQAEPA-------PKEF 65
G GG G G EG +G G A R A SG P G R PQ P P E
Sbjct: 887 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 946
Query: 66 QGDGAAAR----------ADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGAR 115
G R A G + E GE G+ G++ + E P PG
Sbjct: 947 GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI 1006
Query: 116 SSAGEP 121
G+P
Sbjct: 1007 GPVGQP 1012
Score = 35.0 bits (79), Expect = 0.014
Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR-----PCGRR--RHPQAEPAPKEFQGDGAAA 72
G GG G G G G G A E+ G P GR + P P P G A
Sbjct: 917 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPA---GPPGVA 973
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
D G+ +P G G +GE P PGA + GEP
Sbjct: 974 GEDG-DKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEP 1021
Score = 34.3 bits (77), Expect = 0.024
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA G +G G +G++ R E G P G P+ + P+ GA ++ A
Sbjct: 707 GFPGFPGASGEKGARGLSGKSGPRGERG-PTG----PRGQRGPR-----GATGKSGA--K 754
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G S P G GERG + P PG + G P
Sbjct: 755 GTSGGDGPHGPPGERG------LPGPQGPNGFPGPKGPPGPP 790
Score = 33.1 bits (74), Expect = 0.054
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA GA G G G +R G P P K +GD
Sbjct: 428 GRRGRAGADGARGMPGDPGVKGDRGFDGLP--------GLPGEKGHRGD----------T 469
Query: 80 GKSAEPAPGGEGGERGEE 97
G P P GE GERG++
Sbjct: 470 GAQGLPGPPGEDGERGDD 487
Score = 32.0 bits (71), Expect = 0.12
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP----CGRRRHPQAEPAPKEFQGDGAAARAD 75
G G G G G G G E+ + G P R+ P+ F G A
Sbjct: 662 GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGAR 721
Query: 76 ALT--AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
L+ +G E P G G+RG A+ + + G G GE
Sbjct: 722 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 768
Score = 31.6 bits (70), Expect = 0.16
Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 18 HKGGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRR-----RHPQAEPAPKEFQG-DG 69
H+G G G G G G G E G P G R + P P P +G DG
Sbjct: 465 HRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDG 524
Query: 70 AAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
+L G EP P G+ G G + + P G + G P
Sbjct: 525 PQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP 574
Score = 31.6 bits (70), Expect = 0.16
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 24/101 (23%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G GG G G G E E G+P P P
Sbjct: 1166 GDPGPPGEGGPRGQDGAKGDRGEDGEPGQP--------GSPGP----------------T 1201
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
G++ P P G+ G G + R+ + PGA + G+
Sbjct: 1202 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGK 1242
Score = 30.8 bits (68), Expect = 0.27
Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEP--APKEFQGDGAAARADA 76
+G G G G G G G R ++G G + HP P QG+
Sbjct: 1270 QGRPGATGQAGPPGPVGPPGLPGLRGDAGAK-GEKGHPGLIGLIGPPGEQGE-------- 1320
Query: 77 LTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G P P G G++GE PG PG AG
Sbjct: 1321 --KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1361
Score = 30.4 bits (67), Expect = 0.35
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 23/107 (21%)
Query: 38 GRARERAESGRPCGRRRHPQAEPA----PKEFQGDGAAARADALTAGKSAEPA------- 86
G RER ++ +P +R PQ +P+ P+ + AA G+ EPA
Sbjct: 230 GGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGML 289
Query: 87 ----PGGEG--------GERGEESASERESERAPGRGPGARSSAGEP 121
PG EG G +G ER P G S G P
Sbjct: 290 VEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAP 336
Score = 30.4 bits (67), Expect = 0.35
Identities = 32/124 (25%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRP-----------CGRRRHP----QAEPAPK 63
+GG G G GA G G G +G+P G++ P QA P
Sbjct: 1225 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP 1284
Query: 64 EFQGDGAAARADALTAGKSAEP------APGGEGGERGEESASERESERAPGRGPGARSS 117
R DA G+ P P GE GE+G+ P PG +
Sbjct: 1285 VGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP------GPQGSPGQKGE 1338
Query: 118 AGEP 121
G P
Sbjct: 1339 MGIP 1342
Score = 30.0 bits (66), Expect = 0.46
Identities = 28/107 (26%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARA 74
L G G G G G G G E+ + G P PQ P K G
Sbjct: 1293 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP-----GPQGSPGQKGEMG------- 1340
Query: 75 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G S PGG G G + PG G + G P
Sbjct: 1341 ---IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPP 1384
Score = 26.2 bits (56), Expect = 6.7
Identities = 28/104 (26%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHP--QAEPAPKEFQGDGA--AARAD 75
G G G G +G G GR + G P G P E K GD + +
Sbjct: 935 GAAGEKGVPGEKGPIGPTGRDGVQGPVGLP-GPAGPPGVAGEDGDKGEVGDPGQKGTKGN 993
Query: 76 ALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G P P G G+ G A R P GA+ G
Sbjct: 994 KGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEG 1037
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 48.5 bits (114), Expect = 1e-06
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G+ G +G G G ER E G G+ P P PK GD + +
Sbjct: 1212 KGEPGESGSPGIQGEPGVKGPRGERGEKGES-GQPGEP-GPPGPKGPTGDDGP-KGNPGP 1268
Query: 79 AGKSAEPAPGGEGGERGEESA-SERESERAPGRGPGARSSAGE 120
G +P P GEGG RG++ A +R + PG+ PG+ GE
Sbjct: 1269 VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ-PGSPGPTGE 1310
Score = 37.0 bits (84), Expect = 0.004
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG----DG----A 70
+G G G GA+G +GG G E G P + P P PK G DG
Sbjct: 849 RGPRGATGKSGAKGTSGGDGPHGPPGERGLP--GPQGPNGFPGPKGPPGPPGKDGLPGHP 906
Query: 71 AARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
R + GK+ P P G G +G + ER PG G P
Sbjct: 907 GQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 957
Score = 35.0 bits (79), Expect = 0.014
Identities = 37/126 (29%), Positives = 44/126 (34%), Gaps = 24/126 (19%)
Query: 20 GGGGGGGAGGAEGGAGGAGRA-----RERAESGRPCGR--RRHPQAEPA-------PKEF 65
G GG G G EG +G G A R A SG P G R PQ P P E
Sbjct: 994 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 1053
Query: 66 QGDGAAAR----------ADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGAR 115
G R A G + E GE G+ G++ + E P PG
Sbjct: 1054 GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI 1113
Query: 116 SSAGEP 121
G+P
Sbjct: 1114 GPVGQP 1119
Score = 35.0 bits (79), Expect = 0.014
Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR-----PCGRR--RHPQAEPAPKEFQGDGAAA 72
G GG G G G G G A E+ G P GR + P P P G A
Sbjct: 1024 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPA---GPPGVA 1080
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
D G+ +P G G +GE P PGA + GEP
Sbjct: 1081 GEDG-DKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEP 1128
Score = 34.3 bits (77), Expect = 0.024
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA G +G G +G++ R E G P G P+ + P+ GA ++ A
Sbjct: 814 GFPGFPGASGEKGARGLSGKSGPRGERG-PTG----PRGQRGPR-----GATGKSGA--K 861
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G S P G GERG + P PG + G P
Sbjct: 862 GTSGGDGPHGPPGERG------LPGPQGPNGFPGPKGPPGPP 897
Score = 33.1 bits (74), Expect = 0.054
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA GA G G G +R G P P K +GD
Sbjct: 535 GRRGRAGADGARGMPGDPGVKGDRGFDGLP--------GLPGEKGHRGD----------T 576
Query: 80 GKSAEPAPGGEGGERGEE 97
G P P GE GERG++
Sbjct: 577 GAQGLPGPPGEDGERGDD 594
Score = 32.0 bits (71), Expect = 0.12
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP----CGRRRHPQAEPAPKEFQGDGAAARAD 75
G G G G G G G E+ + G P R+ P+ F G A
Sbjct: 769 GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGAR 828
Query: 76 ALT--AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
L+ +G E P G G+RG A+ + + G G GE
Sbjct: 829 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 875
Score = 31.6 bits (70), Expect = 0.16
Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 18 HKGGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRR-----RHPQAEPAPKEFQG-DG 69
H+G G G G G G G E G P G R + P P P +G DG
Sbjct: 572 HRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDG 631
Query: 70 AAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
+L G EP P G+ G G + + P G + G P
Sbjct: 632 PQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP 681
Score = 31.6 bits (70), Expect = 0.16
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 24/101 (23%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G GG G G G E E G+P P P
Sbjct: 1273 GDPGPPGEGGPRGQDGAKGDRGEDGEPGQP--------GSPGP----------------T 1308
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
G++ P P G+ G G + R+ + PGA + G+
Sbjct: 1309 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGK 1349
Score = 30.8 bits (68), Expect = 0.27
Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEP--APKEFQGDGAAARADA 76
+G G G G G G G R ++G G + HP P QG+
Sbjct: 1377 QGRPGATGQAGPPGPVGPPGLPGLRGDAGAK-GEKGHPGLIGLIGPPGEQGE-------- 1427
Query: 77 LTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G P P G G++GE PG PG AG
Sbjct: 1428 --KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1468
Score = 30.4 bits (67), Expect = 0.35
Identities = 32/124 (25%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRP-----------CGRRRHP----QAEPAPK 63
+GG G G GA G G G +G+P G++ P QA P
Sbjct: 1332 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP 1391
Query: 64 EFQGDGAAARADALTAGKSAEP------APGGEGGERGEESASERESERAPGRGPGARSS 117
R DA G+ P P GE GE+G+ P PG +
Sbjct: 1392 VGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP------GPQGSPGQKGE 1445
Query: 118 AGEP 121
G P
Sbjct: 1446 MGIP 1449
Score = 30.0 bits (66), Expect = 0.46
Identities = 28/107 (26%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARA 74
L G G G G G G G E+ + G P PQ P K G
Sbjct: 1400 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLP-----GPQGSPGQKGEMG------- 1447
Query: 75 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G S PGG G G + PG G + G P
Sbjct: 1448 ---IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPP 1491
Score = 26.2 bits (56), Expect = 6.7
Identities = 28/104 (26%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHP--QAEPAPKEFQGDGA--AARAD 75
G G G G +G G GR + G P G P E K GD + +
Sbjct: 1042 GAAGEKGVPGEKGPIGPTGRDGVQGPVGLP-GPAGPPGVAGEDGDKGEVGDPGQKGTKGN 1100
Query: 76 ALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G P P G G+ G A R P GA+ G
Sbjct: 1101 KGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEG 1144
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.4 bits (111), Expect = 3e-06
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 23 GGGGAGGAEGGAGGAGRARERAESGRP----CGRRRHPQAEPAPKEFQGDGAAARADALT 78
GG G G EGG G AG +G P R P PK +G+ AD +
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755
Query: 79 A--------GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G P P G+ G++GE A P PG R G P
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP 806
Score = 44.3 bits (103), Expect = 2e-05
Identities = 37/109 (33%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG-DGAAARADAL- 77
G G GA G+ G +G G A + E G P + P P P G GA A
Sbjct: 906 GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG--PPGAPGPLGIAGITGARGLAGPPG 963
Query: 78 TAGKSAEPAPGGEGGERGEESASERESERAPGRG---PGARSSAGEPER 123
G P P G GE G+ A+ ER P PG +AGEP R
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGR 1012
Score = 42.4 bits (98), Expect = 9e-05
Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 12 AETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAA 71
A L +G G GA GA G GGAG + G P P+ E G A
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEP-----GPRGERGEAGIPGVPGA 460
Query: 72 ARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
D G EP G G GE A P PG + AGE
Sbjct: 461 KGEDG-KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGE 508
Score = 41.6 bits (96), Expect = 2e-04
Identities = 38/110 (34%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQA-----EPAPKEFQGDGAAARA 74
G G GGA G G AG G ER E+G P G P A EP K +G +
Sbjct: 777 GDKGEGGAPGLPGIAGPRGSPGERGETGPP-GPAGFPGAPGQNGEPGGKGERG-APGEKG 834
Query: 75 DALTAGKSAEPAPGGEGGERGEESA-SERESERAPGRG--PGARSSAGEP 121
+ G + P G G G + ER S PG PGAR G P
Sbjct: 835 EGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPP 884
Score = 41.6 bits (96), Expect = 2e-04
Identities = 33/104 (31%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 16 NNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARAD 75
N G G G G G G AG++ +R ESG P G P P P
Sbjct: 1037 NGSPGAPGAPGHPGPPGPVGPAGKSGDRGESG-PAG----PAGAPGP------------- 1078
Query: 76 ALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
A + G P G+ GE GE A+ + R PGA S G
Sbjct: 1079 AGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Score = 40.8 bits (94), Expect = 3e-04
Identities = 29/103 (28%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G GG GG G ++G PQ P P GD
Sbjct: 584 KGNDGAPGKNGERGGPGGPGPQGPPGKNGET-----GPQGPPGPTGPGGDKGDTGPPG-P 637
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G P GG GE G+ + + PG + AG P
Sbjct: 638 QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAP 680
Score = 40.4 bits (93), Expect = 3e-04
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Query: 16 NNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARAD 75
N G G G GA G AG G A E G P G P P G G+ +
Sbjct: 497 NGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG----PGMRGMPGSPGGPGSDGKPG 552
Query: 76 AL-TAGKSAEPAPGGEGGERGEESA----SERESERAPGR-----GPGARSSAGEP 121
+ G+S P P G G RG+ + ++ APG+ GPG G P
Sbjct: 553 PPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPP 608
Score = 39.3 bits (90), Expect = 8e-04
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG--DGAAA 72
+ H+G G G G G G G E+G P P+ P + G A A
Sbjct: 262 MKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAP--GPMGPRGAPGERGRPGLPGAAGA 319
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
R + G +P P G G G + + E P PG+ + G+
Sbjct: 320 RGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ 367
Score = 38.5 bits (88), Expect = 0.001
Identities = 31/105 (29%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHPQAEPAPKEFQGDGAAARADA 76
KG G G G +G G GR E+ E+G P G P AP GA
Sbjct: 251 KGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAP----- 305
Query: 77 LTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G+ P G G RG + A + + P PG G P
Sbjct: 306 ---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSP 347
Score = 38.5 bits (88), Expect = 0.001
Identities = 32/125 (25%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 4 PKYQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHP------- 56
P ++ + KG G GA G G G AG G P G R P
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP-GMRGMPGSPGGPG 546
Query: 57 -QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGAR 115
+P P QG+ +G +P G G +G + A + ER GPG +
Sbjct: 547 SDGKPGPPGSQGESGRPGPPG-PSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ 605
Query: 116 SSAGE 120
G+
Sbjct: 606 GPPGK 610
Score = 38.5 bits (88), Expect = 0.001
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 19 KGGGGGGGAGGAEGGAGGAGR------ARERAESGRPCGRRRHPQAE--PAPKEFQGDGA 70
KG GG G G GG+G AG ER G P G P A P P G+
Sbjct: 833 KGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGP-GAAGFPGARGLPGPPGSNGNPG 891
Query: 71 AARADALTAGKSAEPAPGGEGGERGEESASERESERA-PGR--GPGARSSAGEP 121
+ GK P P G G G S + + PG PGA+ G P
Sbjct: 892 PPGPSG-SPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAP 944
Score = 38.5 bits (88), Expect = 0.001
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G GA G G AG R +G P P+ P P+ +G+ A+ L+
Sbjct: 932 KGSPGAQGPPGAPGPLGIAGITGARGLAGPP--GMPGPRGSPGPQGVKGESGKPGANGLS 989
Query: 79 --------------AGKSAEPAPGGEGGERG---EESASERESERAPGRGPGARSSAGEP 121
AG + EP G G G + + + +R PGA + G P
Sbjct: 990 GERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 1049
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 12 AETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG-DGA 70
A + H+G G GA G+ G AG G +G P+ P G DG
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG--------PRGPVGPSGPPGKDGT 1153
Query: 71 AARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGA 114
+ G P P G GERG E + + P PGA
Sbjct: 1154 SGHP-----GPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGA 1192
Score = 37.0 bits (84), Expect = 0.004
Identities = 32/112 (28%), Positives = 40/112 (35%), Gaps = 13/112 (11%)
Query: 12 AETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAA 71
A L+ +G G G G G AG GR G P GR P K +G+ +
Sbjct: 985 ANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLP-GR----DGSPGGKGDRGENGS 1039
Query: 72 ARADALTA--GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A G P G+ G+RGE + P PG S G P
Sbjct: 1040 PGAPGAPGHPGPPGPVGPAGKSGDRGESGPA------GPAGAPGPAGSRGAP 1085
Score = 36.2 bits (82), Expect = 0.006
Identities = 33/109 (30%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 18 HKGGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQ---AEPAPKEFQGDGAAA 72
H G G G G G GG G G P G R P A AP G G
Sbjct: 376 HAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPG 435
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
+ G EP P GE GE G + E PG + G P
Sbjct: 436 KN-----GAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLP 479
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAA--ARADAL 77
G G G G +G G G E+G+P EP PK G A + DA
Sbjct: 627 GDKGDTGPPGPQGLQGLPGTGGPPGENGKP--------GEPGPKGDAGAPGAPGGKGDAG 678
Query: 78 TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G+ P G G RG E + PG +AG P
Sbjct: 679 APGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTP 722
Score = 35.8 bits (81), Expect = 0.008
Identities = 37/121 (30%), Positives = 44/121 (36%), Gaps = 26/121 (21%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA G +G G G ER +G G R P AP G A + A+ +
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGERGAAGIK-GHRGFPGNPGAPGS---PGPAGQQGAIGS 1132
Query: 80 -------------------GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
G S P P G G RG + ER SE +PG PG G
Sbjct: 1133 PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRG--NRGERGSEGSPGH-PGQPGPPGP 1189
Query: 121 P 121
P
Sbjct: 1190 P 1190
Score = 35.4 bits (80), Expect = 0.011
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 16 NNHKGGGGGGGAGGAEGGAGGAGRARERAESGRP----CGRRRHPQAEPAPKEFQGDGAA 71
N G G G GA G GG G A E G P R P P+ G GAA
Sbjct: 653 NGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPE--GGKGAA 710
Query: 72 ARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
G + P G GERG + + ++ GPGA G+
Sbjct: 711 GPPG--PPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGK 757
Score = 35.0 bits (79), Expect = 0.014
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP-----CGRRRHP--QAEPAPKEFQGDGAAA 72
G G G G G G AG+ ++ E G P G R P + E P G A
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815
Query: 73 RADALTAGKSAEPAPG--GEGGERGEESASERESERAPGRGPGARSSAGEP 121
+ GK APG GEGG G P G + G P
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSP 866
Score = 34.7 bits (78), Expect = 0.019
Identities = 32/109 (29%), Positives = 36/109 (33%), Gaps = 18/109 (16%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
K G GG G G AG G SG P P +QG +
Sbjct: 161 KSGVAVGGLAGYPGPAGPPGPPGPPGTSGHP--------GSPGSPGYQGPPG----EPGQ 208
Query: 79 AGKSAEPAP------GGEGGERGEESASERESERAPGRGPGARSSAGEP 121
AG S P P G G+ GE R ER PG + AG P
Sbjct: 209 AGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIP 257
Score = 30.0 bits (66), Expect = 0.46
Identities = 25/100 (25%), Positives = 28/100 (28%), Gaps = 21/100 (21%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G GA G G G P P F G A
Sbjct: 315 GAAGARGNDGARGSDGQPG-----------------PPGPPGTAGFPGSPGAKG----EV 353
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G + P G G+RGE + P PG S G
Sbjct: 354 GPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPG 393
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.0 bits (110), Expect = 4e-06
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G GA G G AGR +G P P P P G AR D+
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNP-----GPPGPPGPSGKDGP-KGARGDSGP 937
Query: 79 AGKSAEP------APGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G++ EP P GE GE G++ S E P G R G P
Sbjct: 938 PGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLP 986
Score = 44.3 bits (103), Expect = 2e-05
Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAE--PAPKEFQG----DGAAA 72
+G G G G +G AG G+A ER G P G R P P K +G DGA
Sbjct: 242 RGPPGPPGKPGDDGEAGKPGKAGERGPPG-PQGARGFPGTPGLPGVKGHRGYPGLDGAKG 300
Query: 73 RADAL-TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A A G+S P G G G P GAR + G+P
Sbjct: 301 EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQP 350
Score = 42.4 bits (98), Expect = 9e-05
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 27 AGGAEGGAGGAGRARERAESGRPCGRRRHP--QAEPAPKEFQGDGAAARADALTA--GKS 82
AGG + AGGA + G P G R P P P+ FQG+ ++ G
Sbjct: 184 AGGFDEKAGGAQLGVMQGPMG-PMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR 242
Query: 83 AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
P P G+ G+ GE + ER P GAR G P
Sbjct: 243 GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP 281
Score = 42.0 bits (97), Expect = 1e-04
Identities = 35/116 (30%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRRRHP--------QAEPAPKEFQGDG 69
G G G GA G +G GRA E G P G + P + P P+ G
Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980
Query: 70 AAARADALTA--GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123
G P P GE G++G AS P PG AGEP R
Sbjct: 981 GIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 1036
Score = 41.2 bits (95), Expect = 2e-04
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG--DGAAA 72
+ H+G G GA G G G G + E+G P P+ P + G A A
Sbjct: 286 VKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP--GPMGPRGLPGERGRTGPAGAAGA 343
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAP--GRGP-GARSSAGEP 121
R + G + P P G G G A + E P RGP GA+ GEP
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 395
Score = 39.3 bits (90), Expect = 8e-04
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQAE--PAPKEFQGDGAAARAD 75
G G G G G AG G ER E+G P G P A+ P K QG+ A + D
Sbjct: 801 GEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE-AGQKGD 859
Query: 76 ALTAGK---SAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A G S P P G G G + A + PGA G P
Sbjct: 860 AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 908
Score = 38.1 bits (87), Expect = 0.002
Identities = 33/106 (31%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESG--RPCGRRRHPQAEPAPKEFQG-DGAAARAD 75
KG G G GA+G G G ER +G P G R E P+ G DG
Sbjct: 731 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV-GEKGPEGAPGKDGGRG--- 786
Query: 76 ALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G P P G GE+GE PG R G P
Sbjct: 787 --LTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 830
Score = 37.4 bits (85), Expect = 0.003
Identities = 33/121 (27%), Positives = 41/121 (33%), Gaps = 18/121 (14%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHP--QAEPAPKEFQGDGAAARA 74
+G G G G +G G +G E G P G R P P PK G+ A
Sbjct: 560 RGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE 619
Query: 75 DALTA--------------GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
L G + P P G GERGE+ A + PG G+
Sbjct: 620 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGK 679
Query: 121 P 121
P
Sbjct: 680 P 680
Score = 37.0 bits (84), Expect = 0.004
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G GA G G G + +G P G + EP F+G+ + +
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATG-PLGPKGQT-GEPGIAGFKGE-QGPKGEPGP 475
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
AG P P GE G+RG P GA + G P
Sbjct: 476 AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 518
Score = 37.0 bits (84), Expect = 0.004
Identities = 36/109 (33%), Positives = 40/109 (36%), Gaps = 34/109 (31%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
+G G G GA G G AG A ER E G P P FQG
Sbjct: 629 RGLPGKDGETGAAGPPGPAGPAGERGEQGAP-----------GPSGFQG----------- 666
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPG----RG----PGARSSAG 119
P P GEGG+ G++ APG RG PG R S G
Sbjct: 667 --LPGPPGPPGEGGKPGDQGVPGEAG--APGLVGPRGERGFPGERGSPG 711
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAP--------KEFQGDGAA 71
G G GA G G G G +G P GR P A+ P K +G+ A
Sbjct: 1005 GKQGAPGASGDRGPPGPVGPPGLTGPAGEP-GREGSPGADGPPGRDGAAGVKGDRGETGA 1063
Query: 72 ARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
A G P P G G++G+ + + P GAR G
Sbjct: 1064 VGAPG-APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQG 1110
Score = 34.3 bits (77), Expect = 0.024
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
+G G G G G G AG E+ G P PQ P P +G AR +
Sbjct: 443 QGATGPLGPKGQTGEPGIAGFKGEQGPKGEP--GPAGPQGAPGPAGEEGK-RGARGEPGG 499
Query: 79 AGKSAEP----APGGEG--GERGEESASERESERAPGRGPGARSSAGEPER 123
G P APG G G+ G ER P G + + G+P R
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 550
Score = 33.9 bits (76), Expect = 0.032
Identities = 28/101 (27%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP-CGRRRHPQAEPAPKEFQGDGAAARADALT 78
G G GA G G G AG +R E+G P P P G + D
Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK----QGDRGE 1090
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
AG P G G RG + ++ PG R G
Sbjct: 1091 AGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKG 1131
Score = 33.5 bits (75), Expect = 0.042
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRRRHPQAEPAPKEFQGDGAAARADAL 77
G G G G+ G AG G+ +R E+G P G P + QG R D
Sbjct: 1065 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMG----PSGPAGARGIQGP-QGPRGDK- 1118
Query: 78 TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G++ EP G G RG P GA AG
Sbjct: 1119 --GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAG 1158
Score = 33.1 bits (74), Expect = 0.054
Identities = 32/109 (29%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEP------APKEFQGDGAAAR 73
G G G GA G GG G E G P G R P + AP E G A
Sbjct: 483 GPAGEEGKRGARGEPGGVGPIGPPGERGAP-GNRGFPGQDGLAGPKGAPGERGPSGLAGP 541
Query: 74 ADAL-TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A G+ EP G G G + + + P PG G P
Sbjct: 542 KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP 590
Score = 33.1 bits (74), Expect = 0.054
Identities = 38/124 (30%), Positives = 41/124 (33%), Gaps = 24/124 (19%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHPQAEPAPKEFQGDGAA--ARA 74
KG G G GAEG G G A +R G P G R P P P G A A
Sbjct: 956 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL-PGPSGEPGKQGAPGASG 1014
Query: 75 DALTAGKSAEPAPGGEGGERGEESASERESERAPGR-----------------GPGARSS 117
D G P G GE G E + + PGR PGA
Sbjct: 1015 DRGPPGPVGPPGLTGPAGEPGREGSPGADGP--PGRDGAAGVKGDRGETGAVGAPGAPGP 1072
Query: 118 AGEP 121
G P
Sbjct: 1073 PGSP 1076
Score = 30.0 bits (66), Expect = 0.46
Identities = 27/102 (26%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G G G AG G G P +A P R + T
Sbjct: 339 GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 398
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G P P G G G + PGA+ SAG P
Sbjct: 399 G---SPGPAGASGNPGTDGI------------PGAKGSAGAP 425
Score = 29.6 bits (65), Expect = 0.60
Identities = 27/103 (26%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G G G G E G P R P QG + A
Sbjct: 527 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL--TGRPGDAGPQGKVGPSGA---- 580
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G+ P P G G RG+ + PG G P
Sbjct: 581 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 623
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 59 EPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSA 118
+P PK +G+ + G P P G GE+G + E+ PG R
Sbjct: 99 QPGPKGQKGEPGDIKD---IVGPKGPPGPQGPAGEQGPRGDRGDKGEKG---APGPRGRD 152
Query: 119 GEP 121
GEP
Sbjct: 153 GEP 155
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.0 bits (110), Expect = 4e-06
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G GA G G AGR +G P P P P G AR D+
Sbjct: 815 KGARGAQGPPGATGFPGAAGRVGPPGSNGNP-----GPPGPPGPSGKDGP-KGARGDSGP 868
Query: 79 AGKSAEP------APGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G++ EP P GE GE G++ S E P G R G P
Sbjct: 869 PGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLP 917
Score = 44.3 bits (103), Expect = 2e-05
Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAE--PAPKEFQG----DGAAA 72
+G G G G +G AG G+A ER G P G R P P K +G DGA
Sbjct: 173 RGPPGPPGKPGDDGEAGKPGKAGERGPPG-PQGARGFPGTPGLPGVKGHRGYPGLDGAKG 231
Query: 73 RADAL-TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A A G+S P G G G P GAR + G+P
Sbjct: 232 EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQP 281
Score = 42.4 bits (98), Expect = 9e-05
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 27 AGGAEGGAGGAGRARERAESGRPCGRRRHP--QAEPAPKEFQGDGAAARADALTA--GKS 82
AGG + AGGA + G P G R P P P+ FQG+ ++ G
Sbjct: 115 AGGFDEKAGGAQLGVMQGPMG-PMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR 173
Query: 83 AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
P P G+ G+ GE + ER P GAR G P
Sbjct: 174 GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP 212
Score = 42.0 bits (97), Expect = 1e-04
Identities = 35/116 (30%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRRRHP--------QAEPAPKEFQGDG 69
G G G GA G +G GRA E G P G + P + P P+ G
Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911
Query: 70 AAARADALTA--GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123
G P P GE G++G AS P PG AGEP R
Sbjct: 912 GIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 967
Score = 41.2 bits (95), Expect = 2e-04
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG--DGAAA 72
+ H+G G GA G G G G + E+G P P+ P + G A A
Sbjct: 217 VKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP--GPMGPRGLPGERGRTGPAGAAGA 274
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAP--GRGP-GARSSAGEP 121
R + G + P P G G G A + E P RGP GA+ GEP
Sbjct: 275 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 326
Score = 39.3 bits (90), Expect = 8e-04
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQAE--PAPKEFQGDGAAARAD 75
G G G G G AG G ER E+G P G P A+ P K QG+ A + D
Sbjct: 732 GEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE-AGQKGD 790
Query: 76 ALTAGK---SAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A G S P P G G G + A + PGA G P
Sbjct: 791 AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 839
Score = 38.1 bits (87), Expect = 0.002
Identities = 33/106 (31%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESG--RPCGRRRHPQAEPAPKEFQG-DGAAARAD 75
KG G G GA+G G G ER +G P G R E P+ G DG
Sbjct: 662 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV-GEKGPEGAPGKDGGRG--- 717
Query: 76 ALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G P P G GE+GE PG R G P
Sbjct: 718 --LTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 761
Score = 37.4 bits (85), Expect = 0.003
Identities = 33/121 (27%), Positives = 41/121 (33%), Gaps = 18/121 (14%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHP--QAEPAPKEFQGDGAAARA 74
+G G G G +G G +G E G P G R P P PK G+ A
Sbjct: 491 RGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE 550
Query: 75 DALTA--------------GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
L G + P P G GERGE+ A + PG G+
Sbjct: 551 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGK 610
Query: 121 P 121
P
Sbjct: 611 P 611
Score = 37.0 bits (84), Expect = 0.004
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G GA G G G + +G P G + EP F+G+ + +
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATG-PLGPKGQT-GEPGIAGFKGE-QGPKGEPGP 406
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
AG P P GE G+RG P GA + G P
Sbjct: 407 AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 449
Score = 37.0 bits (84), Expect = 0.004
Identities = 36/109 (33%), Positives = 40/109 (36%), Gaps = 34/109 (31%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
+G G G GA G G AG A ER E G P P FQG
Sbjct: 560 RGLPGKDGETGAAGPPGPAGPAGERGEQGAP-----------GPSGFQG----------- 597
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPG----RG----PGARSSAG 119
P P GEGG+ G++ APG RG PG R S G
Sbjct: 598 --LPGPPGPPGEGGKPGDQGVPGEAG--APGLVGPRGERGFPGERGSPG 642
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAP--------KEFQGDGAA 71
G G GA G G G G +G P GR P A+ P K +G+ A
Sbjct: 936 GKQGAPGASGDRGPPGPVGPPGLTGPAGEP-GREGSPGADGPPGRDGAAGVKGDRGETGA 994
Query: 72 ARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
A G P P G G++G+ + + P GAR G
Sbjct: 995 VGAPG-APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQG 1041
Score = 34.3 bits (77), Expect = 0.024
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
+G G G G G G AG E+ G P PQ P P +G AR +
Sbjct: 374 QGATGPLGPKGQTGEPGIAGFKGEQGPKGEP--GPAGPQGAPGPAGEEGK-RGARGEPGG 430
Query: 79 AGKSAEP----APGGEG--GERGEESASERESERAPGRGPGARSSAGEPER 123
G P APG G G+ G ER P G + + G+P R
Sbjct: 431 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 481
Score = 33.9 bits (76), Expect = 0.032
Identities = 28/101 (27%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP-CGRRRHPQAEPAPKEFQGDGAAARADALT 78
G G GA G G G AG +R E+G P P P G + D
Sbjct: 966 GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK----QGDRGE 1021
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
AG P G G RG + ++ PG R G
Sbjct: 1022 AGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKG 1062
Score = 33.5 bits (75), Expect = 0.042
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRRRHPQAEPAPKEFQGDGAAARADAL 77
G G G G+ G AG G+ +R E+G P G P + QG R D
Sbjct: 996 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMG----PSGPAGARGIQGP-QGPRGDK- 1049
Query: 78 TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G++ EP G G RG P GA AG
Sbjct: 1050 --GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAG 1089
Score = 33.1 bits (74), Expect = 0.054
Identities = 32/109 (29%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEP------APKEFQGDGAAAR 73
G G G GA G GG G E G P G R P + AP E G A
Sbjct: 414 GPAGEEGKRGARGEPGGVGPIGPPGERGAP-GNRGFPGQDGLAGPKGAPGERGPSGLAGP 472
Query: 74 ADAL-TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A G+ EP G G G + + + P PG G P
Sbjct: 473 KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP 521
Score = 33.1 bits (74), Expect = 0.054
Identities = 38/124 (30%), Positives = 41/124 (33%), Gaps = 24/124 (19%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHPQAEPAPKEFQGDGAA--ARA 74
KG G G GAEG G G A +R G P G R P P P G A A
Sbjct: 887 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL-PGPSGEPGKQGAPGASG 945
Query: 75 DALTAGKSAEPAPGGEGGERGEESASERESERAPGR-----------------GPGARSS 117
D G P G GE G E + + PGR PGA
Sbjct: 946 DRGPPGPVGPPGLTGPAGEPGREGSPGADGP--PGRDGAAGVKGDRGETGAVGAPGAPGP 1003
Query: 118 AGEP 121
G P
Sbjct: 1004 PGSP 1007
Score = 30.0 bits (66), Expect = 0.46
Identities = 27/102 (26%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G G G AG G G P +A P R + T
Sbjct: 270 GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 329
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G P P G G G + PGA+ SAG P
Sbjct: 330 G---SPGPAGASGNPGTDGI------------PGAKGSAGAP 356
Score = 29.6 bits (65), Expect = 0.60
Identities = 27/103 (26%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G G G G E G P R P QG + A
Sbjct: 458 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL--TGRPGDAGPQGKVGPSGA---- 511
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G+ P P G G RG+ + PG G P
Sbjct: 512 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 554
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 59 EPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSA 118
+P PK +G+ + G P P G GE+G + E+ PG R
Sbjct: 30 QPGPKGQKGEPGDIKD---IVGPKGPPGPQGPAGEQGPRGDRGDKGEKG---APGPRGRD 83
Query: 119 GEP 121
GEP
Sbjct: 84 GEP 86
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 46.6 bits (109), Expect = 5e-06
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
+GGGGGG GGA GG+G E G P P P+ ++G G A+ +
Sbjct: 165 EGGGGGGEGGGAGGGSG-------EREGGAP--------QPPPPRGWRGKGVRAQQRGGS 209
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSS 117
G+ A P+P + + S G G G S
Sbjct: 210 GGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGS 248
Score = 33.1 bits (74), Expect = 0.054
Identities = 38/137 (27%), Positives = 45/137 (32%), Gaps = 45/137 (32%)
Query: 7 QPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESG------RPC---------- 50
Q L + +K G G GG GGA +A A G +P
Sbjct: 72 QQQLQQQQQQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAAT 131
Query: 51 -----GRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESE 105
GRR P EP P+E + K EP P GEGG G
Sbjct: 132 LAALGGRRPGPPEEP-PRELES----------VPSKLGEPPPLGEGGGGG---------- 170
Query: 106 RAPGRGPGARSSAGEPE 122
G G GA +GE E
Sbjct: 171 ---GEGGGAGGGSGERE 184
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 45.4 bits (106), Expect = 1e-05
Identities = 36/105 (34%), Positives = 39/105 (37%), Gaps = 31/105 (29%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
GGGGGGG GG GG GG G A GA A A A A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGA-------------------------GAGGAGAGAVAAAA 285
Query: 80 GKSAEPAPGGEGGERGEESA------SERESERAPGRGPGARSSA 118
+A A GG GG G SA S R+ GPG +A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 35.4 bits (80), Expect = 0.011
Identities = 42/144 (29%), Positives = 54/144 (37%), Gaps = 40/144 (27%)
Query: 16 NNHKGGGGGGGA------------GGAEGGAGGAGRARERA---------------ESGR 48
NN+ GG GGGA GGA+ A G G+A + G
Sbjct: 78 NNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAG-GQADPPGPPLLSKPGDEDDAPPKMGE 136
Query: 49 PCGRR-RHP-------QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESAS 100
P G R HP Q P G G AA + SA PA GG GG G
Sbjct: 137 PAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAG-PCFD 195
Query: 101 ERESERAPGRG---PGARSSAGEP 121
+ +++PG G + ++AG P
Sbjct: 196 QHGGQQSPGMGMMHSASAAAAGAP 219
Score = 26.9 bits (58), Expect = 3.9
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G A A GA G+ + + G P + H P G G +
Sbjct: 204 GMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSG 263
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPG---ARSSAG 119
G G G G +A+ + A G G G SSAG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 45.4 bits (106), Expect = 1e-05
Identities = 36/105 (34%), Positives = 39/105 (37%), Gaps = 31/105 (29%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
GGGGGGG GG GG GG G A GA A A A A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGA-------------------------GAGGAGAGAVAAAA 285
Query: 80 GKSAEPAPGGEGGERGEESA------SERESERAPGRGPGARSSA 118
+A A GG GG G SA S R+ GPG +A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 35.4 bits (80), Expect = 0.011
Identities = 42/144 (29%), Positives = 54/144 (37%), Gaps = 40/144 (27%)
Query: 16 NNHKGGGGGGGA------------GGAEGGAGGAGRARERA---------------ESGR 48
NN+ GG GGGA GGA+ A G G+A + G
Sbjct: 78 NNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAG-GQADPPGPPLLSKPGDEDDAPPKMGE 136
Query: 49 PCGRR-RHP-------QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESAS 100
P G R HP Q P G G AA + SA PA GG GG G
Sbjct: 137 PAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAG-PCFD 195
Query: 101 ERESERAPGRG---PGARSSAGEP 121
+ +++PG G + ++AG P
Sbjct: 196 QHGGQQSPGMGMMHSASAAAAGAP 219
Score = 26.9 bits (58), Expect = 3.9
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G A A GA G+ + + G P + H P G G +
Sbjct: 204 GMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSG 263
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPG---ARSSAG 119
G G G G +A+ + A G G G SSAG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 45.4 bits (106), Expect = 1e-05
Identities = 36/105 (34%), Positives = 39/105 (37%), Gaps = 31/105 (29%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
GGGGGGG GG GG GG G A GA A A A A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGA-------------------------GAGGAGAGAVAAAA 285
Query: 80 GKSAEPAPGGEGGERGEESA------SERESERAPGRGPGARSSA 118
+A A GG GG G SA S R+ GPG +A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 35.4 bits (80), Expect = 0.011
Identities = 42/144 (29%), Positives = 54/144 (37%), Gaps = 40/144 (27%)
Query: 16 NNHKGGGGGGGA------------GGAEGGAGGAGRARERA---------------ESGR 48
NN+ GG GGGA GGA+ A G G+A + G
Sbjct: 78 NNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAG-GQADPPGPPLLSKPGDEDDAPPKMGE 136
Query: 49 PCGRR-RHP-------QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESAS 100
P G R HP Q P G G AA + SA PA GG GG G
Sbjct: 137 PAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAG-PCFD 195
Query: 101 ERESERAPGRG---PGARSSAGEP 121
+ +++PG G + ++AG P
Sbjct: 196 QHGGQQSPGMGMMHSASAAAAGAP 219
Score = 26.9 bits (58), Expect = 3.9
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G A A GA G+ + + G P + H P G G +
Sbjct: 204 GMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSG 263
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPG---ARSSAG 119
G G G G +A+ + A G G G SSAG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 45.1 bits (105), Expect = 1e-05
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 14 TLNNHKGGG-GGGGAGGAEGGAGGAGRARERAESGRP-------CGRRRHPQAEPAPKEF 65
TL+ GGG GGGG GG GG GG G +E S P G R P P +
Sbjct: 31 TLHGPAGGGSGGGGGGGGGGGGGGPGHEQELLASPSPHHAGRGAAGSLRGPPPPPTAHQE 90
Query: 66 QGDGAAARADALTAGKSAEPAPGGEGGE 93
G AAA A A + A +GG+
Sbjct: 91 LGTAAAAAAAASRSAMVTSMASILDGGD 118
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 44.7 bits (104), Expect = 2e-05
Identities = 36/121 (29%), Positives = 44/121 (36%), Gaps = 8/121 (6%)
Query: 4 PKYQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPK 63
P Y ++ + KG G G G G G G ER G P P+ EP PK
Sbjct: 307 PGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTP-----GPRGEPGPK 361
Query: 64 EFQG-DGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRG--PGARSSAGE 120
F G G G++ P GE GE+G+ GR PG S G
Sbjct: 362 GFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPGP 421
Query: 121 P 121
P
Sbjct: 422 P 422
Score = 36.6 bits (83), Expect = 0.005
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT- 78
G G G G +G G G G P G +P + P E +GD D +
Sbjct: 1073 GFPGSPGEKGEKGSIGIPGMPGSPGLKGSP-GSVGYPGSPGLPGE-KGDKGLPGLDGIPG 1130
Query: 79 ----AGKSAEPAPGGEGGERGEE-------SASERESERAPGRG----PGARSSAG 119
AG P P G G++GE SA E+ PGRG PGA+ G
Sbjct: 1131 VKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKG 1186
Score = 33.1 bits (74), Expect = 0.054
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAE--PAPKEFQGDGAAARADA 76
KG G G G G G AG+ + G P G P A P PK G G
Sbjct: 965 KGSRGDPGTPGVPGKDGQAGQPGQPGPKGDP-GISGTPGAPGLPGPKGSVG-GMGLPGTP 1022
Query: 77 LTAGKSAEPAPGGEGGERGEESA-SERESERAPGRG-PGARSSAGE 120
G P P G G G++ A E+ PG G PG R G+
Sbjct: 1023 GEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGD 1068
Score = 31.6 bits (70), Expect = 0.16
Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G G GG G R ++G P G + A P + Q
Sbjct: 573 KGSPGSVGLKGERGPPGGVGFPGSRGDTGPP-GPPGYGPAGPIGDKGQAGFPGGPGSPGL 631
Query: 79 AGKSAEPA--------PGGEG--GERG-EESASERESERAPGRG--PGARSSAGEP 121
G EP PG EG G G +R PGR PG + + G+P
Sbjct: 632 PGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQP 687
Score = 29.3 bits (64), Expect = 0.79
Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 16/113 (14%)
Query: 23 GGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGD-------GAAARAD 75
G G G+ G G G E+ + G P P+ +P K +GD G+ + D
Sbjct: 885 GTPGQPGSPGPVGAPGLPGEKGDHGFPGSSG--PRGDPGLKGDKGDVGLPGKPGSMDKVD 942
Query: 76 ALTA-------GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
+ G+ + P GE G RG+ + PG G+P
Sbjct: 943 MGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDP 995
Score = 28.5 bits (62), Expect = 1.3
Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G +G G G G P ++ EP +G A
Sbjct: 45 KGQKGERGLPGLQGVIGFPGMQGPEGPQGPP--GQKGDTGEPGLPGTKGTRGPPGASGYP 102
Query: 79 AGKSAEPAPGGEG--GERGEESASERESERAPGRGPGARSSAGEP 121
PG +G G G + + ER P PG AG P
Sbjct: 103 GNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNP 147
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 44.7 bits (104), Expect = 2e-05
Identities = 35/103 (33%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G +G G G A SG P G P EP P +G+
Sbjct: 361 KGDPGAFGLKGEKGEPGADGEAGRPGSSG-PSGDEGQP-GEPGPPGEKGE---------- 408
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
AG P P G GERG ER P PG R G+P
Sbjct: 409 AGDEGNPGPDGAPGERGGPG------ERGPRGTPGTRGPRGDP 445
Score = 40.0 bits (92), Expect = 4e-04
Identities = 40/140 (28%), Positives = 49/140 (35%), Gaps = 24/140 (17%)
Query: 6 YQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHP-----QA 58
YQ + + KG G G G +G G G + E G P G + P Q
Sbjct: 297 YQGMKGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQG 356
Query: 59 EPAPKEFQG-------------DGAAARADAL----TAGKSAEPAPGGEGGERGEESASE 101
P PK G DG A R + G+ EP P GE GE G+E
Sbjct: 357 PPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPG 416
Query: 102 RESERAPGRGPGARSSAGEP 121
+ GPG R G P
Sbjct: 417 PDGAPGERGGPGERGPRGTP 436
Score = 40.0 bits (92), Expect = 4e-04
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRRRHP-QAEP-APKEFQGDGAAARAD 75
G G G G G G G A + + GR P G P +A P PK ++GD ++
Sbjct: 428 GERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPGSE 487
Query: 76 ALTAGKSAEPAPGGEG--GERGEESASERESERAPGRGPGARSSAGEP 121
PG G GERGE+ + +E PG PG + G P
Sbjct: 488 GARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPG-FPGYPGNRGAP 534
Score = 38.9 bits (89), Expect = 0.001
Identities = 33/102 (32%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G GA G GG G ER G P R P+ +P QGD
Sbjct: 410 GDEGNPGPDGAPGERGGPG---ERGPRGTP--GTRGPRGDPGEAGPQGD-QGREGPVGVP 463
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G E P G G RG+E E R PG G+P
Sbjct: 464 GDPGEAGPIGPKGYRGDEGPPGSEGARG---APGPAGPPGDP 502
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 44.3 bits (103), Expect = 2e-05
Identities = 38/107 (35%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 18 HKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL 77
H+G G GAG A G A R RE A G P P P G GAAA L
Sbjct: 26 HRGRPGPEGAGPAAGLDVRAAR-REAASPGTP-----GPPPPPPAASGPGPGAAAAPHLL 79
Query: 78 TAGKSAE------PAPGGEGGERGEESASERESERAPGRGPGARSSA 118
A A+ APGG +AS S RAPG P A + +
Sbjct: 80 AASILADLRGGPGAAPGGASPASSSSAASSPSSGRAPGAAPSAAAKS 126
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 44.3 bits (103), Expect = 2e-05
Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA G EG G GR E+ E GRP A PK +GD A T
Sbjct: 1510 GVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATG 1569
Query: 80 GKS----------AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
+ +P P G+ G+RG + R PG + G P
Sbjct: 1570 VQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRP 1621
Score = 43.1 bits (100), Expect = 5e-05
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPC-----GRRRHPQAEPAPKEFQGDG 69
L G G G G GG G AGR ER E G GR P P G
Sbjct: 2032 LAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPG 2091
Query: 70 AAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
D G S E P G G +GE ++ + + PG + GEP
Sbjct: 2092 PKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEP 2143
Score = 42.7 bits (99), Expect = 7e-05
Identities = 40/115 (34%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARA 74
L+ G G GA G G G AG+A + G P R Q P P G
Sbjct: 1777 LDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLP--GLRGEQGLPGPSGPPGLPGKPGE 1834
Query: 75 DALTA--GKSAEPA-PGGEG--GERGEESASERESERAP--GRG-PGARSSAGEP 121
D GK+ EP PG +G GE+G+ AS RE P RG PG G P
Sbjct: 1835 DGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPP 1889
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/102 (31%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G G G +G +R E G P R P +E G R
Sbjct: 1672 KGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPG--DRGQEGP 1729
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
G +P G GERG E P PG R AGE
Sbjct: 1730 RGPKGDPGLPGAPGERGIEGF---RGPPGPQGDPGVRGPAGE 1768
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/126 (26%), Positives = 42/126 (33%), Gaps = 27/126 (21%)
Query: 15 LNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARA 74
L HKG G G G G G G + + G +P PK QG+
Sbjct: 2654 LAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGF--------DGQPGPKGDQGEKGERGT 2705
Query: 75 DALTA--------GKSAEPAPGGEGGERGEESASERESER---------APG--RGPGAR 115
+ G + P P G G RG E ++ ER APG PG R
Sbjct: 2706 PGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGER 2765
Query: 116 SSAGEP 121
G P
Sbjct: 2766 GEQGRP 2771
Score = 35.4 bits (80), Expect = 0.011
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 19/117 (16%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G G G G R E GRP + P+ P +G+ + D +
Sbjct: 2457 KGDKGDPGVG-LPGPRGERGEPGIRGEDGRP--GQEGPRGLTGPPGSRGE-RGEKGDVGS 2512
Query: 79 AGKSAE----------PAPGGEGGERGEESASERESERAPGRG----PGARSSAGEP 121
AG + P P G G+ GE + ++ P RG PG + S GEP
Sbjct: 2513 AGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGP-RGDNGDPGDKGSKGEP 2568
Score = 35.0 bits (79), Expect = 0.014
Identities = 35/132 (26%), Positives = 46/132 (34%), Gaps = 25/132 (18%)
Query: 4 PKYQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRR---------- 53
PK +P + + GG G G G +G G +G R G P R
Sbjct: 1345 PKGEPGAPGQVI-----GGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMK 1399
Query: 54 -----RHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAP 108
R + P P G+G A + G P P G G G++ + AP
Sbjct: 1400 GDKGDRGERGPPGP----GEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAP 1455
Query: 109 GRGPGARSSAGE 120
G PG S GE
Sbjct: 1456 GL-PGQPGSPGE 1466
Score = 33.9 bits (76), Expect = 0.032
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G GA G G G A + E G P R P G+ A L
Sbjct: 1272 GDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGR-----PGSPGRAGNPGTPGAPGLK- 1325
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGR-----GPGARSSAGEP 121
G P P G+ GERG APG+ GPG G+P
Sbjct: 1326 GSPGLPGPRGDPGERGPRGPKGEPG--APGQVIGGEGPGLPGRKGDP 1370
Score = 33.9 bits (76), Expect = 0.032
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 23 GGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKS 82
G G GA+G G GRA G P G + P P P+ G+ R G+
Sbjct: 1296 GERGFPGADGRPGSPGRAGNPGTPGAP-GLKGSPGL-PGPRGDPGE----RGPRGPKGEP 1349
Query: 83 AEPAP--GGEG----GERGEESASERESERAPGRGPGARSSAGEP 121
P GGEG G +G+ S R P PG R G P
Sbjct: 1350 GAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLP 1394
Score = 33.5 bits (75), Expect = 0.042
Identities = 38/138 (27%), Positives = 42/138 (30%), Gaps = 33/138 (23%)
Query: 12 AETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAA 71
A L G G G G G G AGRA E + G + P PK F+GD
Sbjct: 2319 AGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGED-----GQKGAPGPKGFKGDPGV 2373
Query: 72 A-------------RADALTAGKSAEPA----PG-----------GEGGERGEESASERE 103
+ D G P PG G GERG RE
Sbjct: 2374 GVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGRE 2433
Query: 104 SERAPGRGPGARSSAGEP 121
P PG S G P
Sbjct: 2434 GIPGPLGPPGPPGSVGPP 2451
Score = 33.1 bits (74), Expect = 0.054
Identities = 29/103 (28%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G G AG G + E G P R P P+ G+ + D
Sbjct: 1588 KGDPGDRGPIGLTGRAGPPGDSGPPGEKGDP--GRPGPPGPVGPRGRDGE-VGEKGDEGP 1644
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G P GE G RG E+ PG G P
Sbjct: 1645 PGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSP 1687
Score = 32.7 bits (73), Expect = 0.071
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G G G +G G AG ++ +S G P P+ +GD +
Sbjct: 2496 GPPGSRGERGEKGDVGSAGLKGDKGDSAVILG-------PPGPRGAKGD----MGERGPR 2544
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G + P G+ G+ G++ + ++ PG R G
Sbjct: 2545 GLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLG 2584
Score = 32.3 bits (72), Expect = 0.093
Identities = 37/129 (28%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 16 NNHKGGGGGGGAGGAEGGAGGAGR-------ARERAESGR-----PCGRRRHPQAEPAPK 63
N G G G G G G GR ARE+ E G P G + P AP
Sbjct: 1684 NGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPG 1743
Query: 64 EFQGDGAAARADALTAGKSAEPAPGGEGGERGE--------ESASERESERAPGRGP-GA 114
E +G G +P G GE+G+ S + + A GP GA
Sbjct: 1744 ERGIEGFRG-----PPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGA 1798
Query: 115 RSSAGEPER 123
AG+P R
Sbjct: 1799 AGKAGDPGR 1807
Score = 31.2 bits (69), Expect = 0.21
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 26 GAGGAEGGAGGAGRARERAES--------GRPCGR-RRHPQAEPAPKEFQGDGAAARADA 76
G+ G +G G G+ E+ +S G+P + P+ P +GD
Sbjct: 1430 GSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFP-GPL 1488
Query: 77 LTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
AG+ E P G G RG + R + P PG GE
Sbjct: 1489 GEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGE 1532
Score = 30.8 bits (68), Expect = 0.27
Identities = 26/106 (24%), Positives = 33/106 (31%), Gaps = 4/106 (3%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL-- 77
G G G+ G G G G + E G + P K +G D +
Sbjct: 2266 GKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGE 2325
Query: 78 --TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G P P GE GE G E PG + G+P
Sbjct: 2326 PGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDP 2371
Score = 30.8 bits (68), Expect = 0.27
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 16 NNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRR--RHPQAEPAPKEFQGDGAAAR 73
+ + G G G G+ G G G ++ E G P G R P AP E
Sbjct: 2715 SGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPP-GERVVGAPGVPGAPGE--------- 2764
Query: 74 ADALTAGKSAEPAPGGEGGERGEESASE 101
G+ P P G GE+GE + +E
Sbjct: 2765 -----RGEQGRPGPAGPRGEKGEAALTE 2787
Score = 30.4 bits (67), Expect = 0.35
Identities = 31/106 (29%), Positives = 35/106 (33%), Gaps = 25/106 (23%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G EG G G + + G P PQ P L
Sbjct: 1981 KGDSGEQGPPGKEGPIGFPGERGLKGDRGDP-----GPQGPPG---------------LA 2020
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRG----PGARSSAGE 120
G+ P P G GE G+ RA G G PG R GE
Sbjct: 2021 LGERGPPGPSGLAGEPGKPGIPGLPG-RAGGVGEAGRPGERGERGE 2065
Score = 29.3 bits (64), Expect = 0.79
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G GG G G G G AG A + SG + EP G G A+
Sbjct: 2177 GPVGGHGDPGPPGAPGLAGPAGPQGPSGL--------KGEPGETGPPGRGLTGPTGAV-- 2226
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
G P P G G +G + E PG ++G+
Sbjct: 2227 GLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGK 2267
Score = 28.1 bits (61), Expect = 1.8
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 24 GGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSA 83
G G G +G G G E +G + P+ + +GD R + G+
Sbjct: 2100 GPGLSGEQGPPGLKGAKGEPGSNGD-----QGPKGDRGVPGIKGD----RGEPGPRGQDG 2150
Query: 84 EPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
P GE G G E + R P G G P
Sbjct: 2151 NPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPP 2188
>gi|134019487 chromatin modifying protein 1A isoform 1 [Homo
sapiens]
Length = 240
Score = 43.9 bits (102), Expect = 3e-05
Identities = 36/115 (31%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 18 HKGGGGGGGAGGAEGGAGGAGRARE--RAESGRPCG---RRRHPQAEPAPKEFQGDGAAA 72
H G G G EG GGAG++ E AE R C R RHPQ E E DG
Sbjct: 4 HGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQ-EERRCELASDGVPR 62
Query: 73 RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRG----PGARSSAGEPER 123
R L S + G + G++S + P G R++ EP R
Sbjct: 63 RRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGR 117
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 43.1 bits (100), Expect = 5e-05
Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 23 GGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQA--EPAPKEFQGDGAAARADALT 78
G GA G GG G G R E G P G R P A P P GD R +A
Sbjct: 643 GERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD----RGEAGA 698
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
AG + P G GERGE + P G + GE
Sbjct: 699 AGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740
Score = 42.0 bits (97), Expect = 1e-04
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GA G G G AG E G P PQ P P +G +A +A
Sbjct: 334 GAAGATGARGLVGEPGPAGSKGESGNKGEPGSAG--PQGPPGPSGEEGK-RGPNGEAGSA 390
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G P G G RG A R P PG+R ++G
Sbjct: 391 GPPGPPGLRGSPGSRGLPGADGRAGVMGP---PGSRGASG 427
Score = 40.8 bits (94), Expect = 3e-04
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQ-AEPAPKEFQGD-------GA 70
+GG G G G G G G + E G+P R H + P P +G+ GA
Sbjct: 540 QGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGA 599
Query: 71 AARADAL-TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A + + G S P P G GE G A P PG R +AG P
Sbjct: 600 AGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIP 651
Score = 40.8 bits (94), Expect = 3e-04
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 16 NNHKGGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRR--RHPQAEPAPKEFQGDGAA 71
N G G G GA+G G G E G P G P P P +GDG
Sbjct: 723 NGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGP 782
Query: 72 ARADAL--TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
AG++ P P G G G + +E R P G GE
Sbjct: 783 PGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGE 833
Score = 38.9 bits (89), Expect = 0.001
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 12 AETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAA 71
A L KG G G GA G G G +G R EP P +G+ +
Sbjct: 302 ANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGL--VGEPGPAGSKGE-SG 358
Query: 72 ARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
+ + +AG P P GE G+RG E S PG PG R S G
Sbjct: 359 NKGEPGSAGPQGPPGPSGEEGKRGPN--GEAGSAGPPG-PPGLRGSPG 403
Score = 35.8 bits (81), Expect = 0.008
Identities = 39/120 (32%), Positives = 43/120 (35%), Gaps = 22/120 (18%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR-----------PCGRRRHPQAEPAPKEFQGD 68
G G G GA G AG G+A E G+ P G R P P F+G
Sbjct: 121 GEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFP-GTPGLPGFKGI 179
Query: 69 GAAARADAL-----TAGKSAEPAPGGEGGERGEESASERESER----APGRGPGARSSAG 119
D L G EP GE G G+ A ER APG GAR S G
Sbjct: 180 RGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPA-GARGSDG 238
Score = 35.8 bits (81), Expect = 0.008
Identities = 30/102 (29%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 79
G G GG G G G AGR SG P P P +G R D
Sbjct: 775 GSRGDGGPPGMTGFPGAAGRTGPPGPSGIS-----GPPGPPGPAGKEGL-RGPRGDQGPV 828
Query: 80 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
G++ E G G GE+ S P PG + G P
Sbjct: 829 GRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAP 870
Score = 35.0 bits (79), Expect = 0.014
Identities = 40/139 (28%), Positives = 45/139 (32%), Gaps = 27/139 (19%)
Query: 2 LCPKYQPVLAAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPA 61
LC L ET+ KG G G G G G GR E +G P P P
Sbjct: 17 LCLATCQSLQEETVR--KGPAGDRGPRGERGPPGPPGRDGEDGPTGPP-----GPPGPPG 69
Query: 62 PKEFQGDGAAARADALTAGKSAEP--------------APGGEG-----GERGEESASER 102
P G AA+ D G P APG +G GE GE +
Sbjct: 70 PPGL-GGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGP 128
Query: 103 ESERAPGRGPGARSSAGEP 121
R P PG G P
Sbjct: 129 AGARGPAGPPGKAGEDGHP 147
Score = 35.0 bits (79), Expect = 0.014
Identities = 39/139 (28%), Positives = 44/139 (31%), Gaps = 38/139 (27%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRP-----CGRRRHPQAE--------------- 59
G G G GA G AG AG A R E G P G +P A
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVA 318
Query: 60 -----PAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA------------SER 102
P P+ G AA A G EP P G GE G + S
Sbjct: 319 GAPGLPGPRGIPGPVGAAGATG-ARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGE 377
Query: 103 ESERAPGRGPGARSSAGEP 121
E +R P G+ G P
Sbjct: 378 EGKRGPNGEAGSAGPPGPP 396
Score = 34.7 bits (78), Expect = 0.019
Identities = 35/119 (29%), Positives = 41/119 (34%), Gaps = 29/119 (24%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG-DGAAARADAL 77
+G G G GA+G G G + E G P P FQG G + A +
Sbjct: 519 RGAPGPDGNNGAQGPPGPQGVQGGKGEQG-----------PPGPPGFQGLPGPSGPAGEV 567
Query: 78 TAGKSAE---------PAPGGEGGERGEESASERE------SERAPGRGPGARSSAGEP 121
GK E P P G GERG S R P PG + GEP
Sbjct: 568 --GKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEP 624
Score = 34.7 bits (78), Expect = 0.019
Identities = 36/109 (33%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGR-----PCGRRRHPQAEPAPKEFQGDGAAARA 74
G G G G G AG G ESG P G R P P P +G+ A
Sbjct: 571 GERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRG-PSGPPGPDGNKGEPGVVGA 629
Query: 75 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123
TAG S P G GERG + E+ PG R G P R
Sbjct: 630 VG-TAGPSG---PSGLPGERGAAGIPGGKGEKGE---PGLRGEIGNPGR 671
Score = 34.3 bits (77), Expect = 0.024
Identities = 29/102 (28%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPA-PKEFQGDGAAARADALT 78
G G G GA G G AG A +G + PA P F G AA
Sbjct: 679 GAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPG-A 737
Query: 79 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 120
G+ P GE G G P PG S G+
Sbjct: 738 KGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGD 779
Score = 34.3 bits (77), Expect = 0.024
Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 13/111 (11%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQAEPAPKEFQGDGAAARADA 76
+G G G+ G G G AGR G P G+ H P GAA
Sbjct: 906 RGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAG---- 961
Query: 77 LTAGKSAEPAPGGEGGERGEESAS------ERESERAPGRGPGARSSAGEP 121
G P G+ G RGE S R P G R GEP
Sbjct: 962 -APGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEP 1011
Score = 33.1 bits (74), Expect = 0.054
Identities = 31/105 (29%), Positives = 33/105 (31%), Gaps = 19/105 (18%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 78
KG G G G G G G G A P P+ FQG T
Sbjct: 84 KGVGLGPGPMGLMGPRGPPGAA-----------------GAPGPQGFQGPAGEPGEPGQT 126
Query: 79 --AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
AG P G+ GE G R ER GAR G P
Sbjct: 127 GPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTP 171
Score = 31.6 bits (70), Expect = 0.16
Identities = 33/114 (28%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 19 KGGGGGGGAGGAEGGAGGAGRARERAESGR-----PCGRRRHPQAEPA---PKEFQGD-- 68
+G G G GA+G AG G R SG P G P EP P+ G
Sbjct: 399 RGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRP-GEPGLMGPRGLPGSPG 457
Query: 69 --GAAARADAL-TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 119
G A + + G P P G G RGE + P PG G
Sbjct: 458 NIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKG 511
Score = 30.8 bits (68), Expect = 0.27
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESG-----RPCGRRRHPQAEPAPKEFQGDGAAARA 74
G G GA G G G AG+ R E+G P G P+ P+ +GD
Sbjct: 955 GPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAG-AVGPRGPSGPQGIRGD------ 1007
Query: 75 DALTAGKSAEPAPGGEGGERGEES-------ASERESERAPGR-GP-GARSSAG 119
G+ E P G G +G A + APG GP G R AG
Sbjct: 1008 ----KGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAG 1057
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 43.1 bits (100), Expect = 5e-05
Identities = 40/107 (37%), Positives = 46/107 (42%), Gaps = 23/107 (21%)
Query: 13 ETLNNHKGGGGGGGAGGAEGGAGG---------AGRA-RERAESGRPCGRRRHPQAEPAP 62
E L N G GG GGA GG GG AGR+ +E AE G+ C A
Sbjct: 253 EKLENRSEAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQEGAEGGQGCSEAWATLGWAAA 312
Query: 63 KEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPG 109
F G G A TAG GG GG RG + ASE ++ A G
Sbjct: 313 GGFGGGGGAC-----TAG-------GGGGGYRGGD-ASETDNLWADG 346
Score = 30.8 bits (68), Expect = 0.27
Identities = 36/126 (28%), Positives = 46/126 (36%), Gaps = 37/126 (29%)
Query: 17 NHKGGGGGGGAGGAE--------------GGAGGAGRARERAESGRPCGRRRHPQAEPAP 62
+ + GGGGG GGA AGG GRA R R QA P
Sbjct: 201 SRRWAGGGGGGGGATYVFRVRAGELEPLLVAAGGGGRAYLRPRD------RGRTQASPEK 254
Query: 63 KEFQ---------------GDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERA 107
E + G G +RA + AG+S + G EGG+ E+ + A
Sbjct: 255 LENRSEAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQ--EGAEGGQGCSEAWATLGWAAA 312
Query: 108 PGRGPG 113
G G G
Sbjct: 313 GGFGGG 318
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 43.1 bits (100), Expect = 5e-05
Identities = 35/97 (36%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPA-PKEFQGDGAAARADALT 78
GGGG G GG G A A G P GRRR P E P++ +G A R
Sbjct: 68 GGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAE 127
Query: 79 AGKSAEPAPGGEGGERGEESASER--ESERAPGRGPG 113
A +A P G E A+ER + E A GPG
Sbjct: 128 AAAAAMATPARPG---EAEDAAERPLQDEPAAAAGPG 161
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 42.7 bits (99), Expect = 7e-05
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 13 ETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAA 72
E L GG GGGG GG G G +GR G + +A PAP +++
Sbjct: 121 EPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSS 180
Query: 73 RADALTAGKSAEPAPGGEG-GERGEESA-----SERESERAPGRGPGA 114
++ K E + E G G E + E+ + G GPGA
Sbjct: 181 STSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGA 228
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 42.4 bits (98), Expect = 9e-05
Identities = 20/38 (52%), Positives = 21/38 (55%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQ 57
GGGGGGG GG GG GG G A + P G R PQ
Sbjct: 451 GGGGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQ 488
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 20 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAAR 73
GGGGGGG GG GG G AG + P G AP + G +R
Sbjct: 458 GGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQGLAGQESDFTAPDVWYPGGMVSR 511
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 42.4 bits (98), Expect = 9e-05
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 18 HKGGG----GGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG------ 67
+KGGG GGGG+G A AG AG A + AE + E +G
Sbjct: 4 NKGGGEAESGGGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPD 63
Query: 68 DGAAARADALTAGKSAEPAPG-GEGGERGEESASERESERAPGRGPGARSSAGEP 121
DG A A + +A ++ PA G G G S AP GP A G P
Sbjct: 64 DGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGPSAGPPPGPP 118
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 42.4 bits (98), Expect = 9e-05
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 18 HKGGG----GGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG------ 67
+KGGG GGGG+G A AG AG A + AE + E +G
Sbjct: 4 NKGGGEAESGGGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPD 63
Query: 68 DGAAARADALTAGKSAEPAPG-GEGGERGEESASERESERAPGRGPGARSSAGEP 121
DG A A + +A ++ PA G G G S AP GP A G P
Sbjct: 64 DGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGPSAGPPPGPP 118
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 42.4 bits (98), Expect = 9e-05
Identities = 33/93 (35%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 18 HKGGGGGGGAGGAEGGAGGAGRARERA--ESGRPCGRRRHPQAEPAPKEFQGDGAAARAD 75
+ GGGGGG AG G GGAG A E G Q EP+P G A
Sbjct: 164 YPGGGGGGLAGMLAAGGGGAGPGLHHALHEDG------HEAQLEPSPPPHLGAHGHAHGH 217
Query: 76 ALTAGKSAEPAPGGEGGERGEESASERESERAP 108
A G A A G G S E E AP
Sbjct: 218 AHAGGLHAAAAHLHPGAGGGGSSVGEHSDEDAP 250
Score = 39.3 bits (90), Expect = 8e-04
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 20 GGGGGGGAGG-----AEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARA 74
GGGGG AGG + G GG GRA + G R H A A G A +
Sbjct: 78 GGGGGDWAGGPHLEHGKAGGGGTGRADDGGGGGGFHARLVHQGAAHA-----GAAWAQGS 132
Query: 75 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPG 113
A G + P+PG GG + + ++ G G G
Sbjct: 133 TAHHLGPAMSPSPGASGGHQPQPLGLYAQAAYPGGGGGG 171
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 42.0 bits (97), Expect = 1e-04
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 11 AAETLNNHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGA 70
AA T+ + GGGGGGG+GG G +G G G G +P A G G
Sbjct: 66 AAATVTSTGGGGGGGGSGGGGGSSGNGG-----GGGGGGGGSNCNPNLAAASNGSGGGGG 120
Query: 71 AARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 121
A A + A G S+S S + G+P
Sbjct: 121 GISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKP 171
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,989,049
Number of Sequences: 37866
Number of extensions: 447941
Number of successful extensions: 14148
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 727
Number of HSP's that attempted gapping in prelim test: 3750
Number of HSP's gapped (non-prelim): 5977
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.