Guide to the Human Genome
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Name: ZCCHC3 Sequence: fasta or formatted (403aa) NCBI GI: 29648305
Description:

zinc finger, CCHC domain containing 3

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         47           5
 C cysteine            3.5         14           1
 D aspartate           4.7         19           1
 E glutamate           8.9         36           3
 F phenylalanine       4.2         17           2
 G glycine            13.2         53           5
 H histidine           1.7          7           1
 I isoleucine          2.7         11           1
 K lysine              6.2         25           3
 L leucine             6.2         25           2
 M methionine          1.2          5           1
 N asparagine          1.2          5           1
 P proline             6.7         27           2
 Q glutamine           2.7         11           1
 R arginine            9.7         39           3
 S serine              4.0         16           2
 T threonine           3.0         12           1
 V valine              5.7         23           2
 W tryptophan          1.2          5           1
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, CCHC domain containing 3 
CNBP                  0.036   zinc finger protein 9 isoform 6 
CNBP                  0.036   zinc finger protein 9 isoform 5 
CNBP                  0.036   zinc finger protein 9 isoform 4 
CNBP                  0.036   zinc finger protein 9 isoform 2 
CNBP                  0.036   zinc finger protein 9 isoform 1 
CNBP                  0.036   zinc finger protein 9 isoform 3 
BASP1                 0.027   brain abundant, membrane attached signal protein 1 [...
ZCCHC13               0.026   zinc finger, CCHC domain containing 13 
LOC643355             0.025   PREDICTED: hypothetical protein 
LOC643355             0.025   PREDICTED: hypothetical protein 
LOC100131851          0.023   PREDICTED: hypothetical protein 
LOC100130751          0.023   PREDICTED: hypothetical protein 
LOC100131851          0.022   PREDICTED: hypothetical protein 
ZCCHC9                0.022   zinc finger, CCHC domain containing 9 
ZCCHC9                0.022   zinc finger, CCHC domain containing 9 
ZCCHC9                0.022   zinc finger, CCHC domain containing 9 
COL1A1                0.022   alpha 1 type I collagen preproprotein 
COL3A1                0.022   collagen type III alpha 1 preproprotein 
LOC643355             0.021   PREDICTED: hypothetical protein 
CNOT3                 0.021   CCR4-NOT transcription complex, subunit 3 
ANKRD43               0.021   ankyrin repeat domain 43 
COL11A1               0.020   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.020   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.020   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL2A1                0.020   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.020   collagen, type II, alpha 1 isoform 2 precursor [Hom...
ZFP91                 0.020   zinc finger protein 91 
CLIC6                 0.020   chloride intracellular channel 6 
LOC100292370          0.018   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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