Search of human proteins with 239740918

Search of human proteins with 239740918

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740918 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
         (281 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740918 PREDICTED: similar to major histocompatibility comp...   578   e-165
gi|239748788 PREDICTED: similar to major histocompatibility comp...   532   e-151
gi|239740863 PREDICTED: similar to major histocompatibility comp...   530   e-151
gi|239513955 PREDICTED: similar to major histocompatibility comp...   530   e-151
gi|239740920 PREDICTED: similar to major histocompatibility comp...   528   e-150
gi|239758095 PREDICTED: similar to major histocompatibility comp...   527   e-150
gi|239740749 PREDICTED: similar to major histocompatibility comp...   527   e-150
gi|169168591 PREDICTED: similar to major histocompatibility comp...   518   e-147
gi|150418002 major histocompatibility complex, class II, DQ beta...   478   e-135
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   333   8e-92
gi|52630344 major histocompatibility complex, class II, DR beta ...   333   1e-91
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   333   1e-91
gi|18641375 major histocompatibility complex, class II, DR beta ...   331   4e-91
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   331   5e-91
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   331   5e-91
gi|155030211 major histocompatibility complex, class II, DR beta...   330   8e-91
gi|24797076 major histocompatibility complex, class II, DP beta ...   329   2e-90
gi|239740857 PREDICTED: similar to major histocompatibility comp...   328   3e-90
gi|239740853 PREDICTED: similar to major histocompatibility comp...   323   8e-89
gi|239740859 PREDICTED: similar to major histocompatibility comp...   322   3e-88
gi|17986005 major histocompatibility complex, class II, DR beta ...   319   2e-87
gi|239740855 PREDICTED: similar to major histocompatibility comp...   319   2e-87
gi|239758090 PREDICTED: major histocompatibility complex, class ...   311   4e-85
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   309   2e-84
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   309   2e-84
gi|4504403 major histocompatibility complex, class II, DO beta p...   296   1e-80
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   275   2e-74
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   248   6e-66
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   185   3e-47
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   137   8e-33

>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  578 bits (1489), Expect = e-165
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL 281


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  532 bits (1371), Expect = e-151
 Identities = 261/281 (92%), Positives = 267/281 (95%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVR V+
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT LG PAAEYWNSQK++LER RA +D VCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRW VTQTLCS RSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  530 bits (1364), Expect = e-151
 Identities = 259/281 (92%), Positives = 266/281 (94%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPGGLR ATVTLML+MLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVR V+
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT LG PAAEYWNSQK++LER RA +D VCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRW VTQTLCS RSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  530 bits (1364), Expect = e-151
 Identities = 259/281 (92%), Positives = 266/281 (94%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPGGLR ATVTLML+MLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVR V+
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT LG PAAEYWNSQK++LER RA +D VCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRW VTQTLCS RSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  528 bits (1361), Expect = e-150
 Identities = 258/258 (100%), Positives = 258/258 (100%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKG 258
           GLIFLGLGLIIHHRSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  527 bits (1357), Expect = e-150
 Identities = 258/281 (91%), Positives = 265/281 (94%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPGGLR ATVTLML+MLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVR V+
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT LG PAAEYWNSQK++LER RA +D VCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN QEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRW VTQTLCS RSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  527 bits (1357), Expect = e-150
 Identities = 258/281 (91%), Positives = 265/281 (94%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPGGLR ATVTLML+MLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVR V+
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT LG PAAEYWNSQK++LER RA +D VCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN QEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRW VTQTLCS RSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  518 bits (1334), Expect = e-147
 Identities = 252/258 (97%), Positives = 255/258 (98%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFV+QFKGMCYFTNGTERVRGVT
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKGMCYFTNGTERVRGVT 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRA +DTVCRHNYQLELR
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKG 258
           GLIFLGLGLIIHHRSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  478 bits (1230), Expect = e-135
 Identities = 235/258 (91%), Positives = 242/258 (93%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60
           MSWKKALRIPG LRVATVTLMLAMLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVR VT
Sbjct: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120
           RYIYNREEYARFDSDVGVYRAVTP G P AEYWNSQKEVLE TRAELDTVCRHNY++  R
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKG 258
           GLIFLGLGLII  RSQKG
Sbjct: 241 GLIFLGLGLIIRQRSQKG 258


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  333 bits (855), Expect = 8e-92
 Identities = 163/260 (62%), Positives = 199/260 (76%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           LR+PGG  +A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVR + RY +N+
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ RA +DT CRHNY +    T+QRR
Sbjct: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE TGVVST LI NGDWT
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKGEEPQGKRG 266
            GL I+ R+QKG      RG
Sbjct: 244 AGLFIYFRNQKGHSGLQPRG 263


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  333 bits (854), Expect = 1e-91
 Identities = 159/252 (63%), Positives = 199/252 (78%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERV  + RYIYN+
Sbjct: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EEYAR++SD+G Y+AVT LG P AEYWNSQK++LER RAE+DT CR+NY +    T+QRR
Sbjct: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V+P VT+ PS+T+ L HHNLLVCSV  FYP  I+VRWFRN QEE  GVVST LI+NGDWT
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ V+W A+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 TGLFIYFRNQKG 255


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  333 bits (853), Expect = 1e-91
 Identities = 163/252 (64%), Positives = 197/252 (78%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERVR + R IYN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGIYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE  RFDSDVG YRAVT LG P AE WNSQK+ LER RAE+DTVCRHNY +    T+QRR
Sbjct: 64  EENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  331 bits (849), Expect = 4e-91
 Identities = 163/252 (64%), Positives = 195/252 (77%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERVR + R IYN+
Sbjct: 4   LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE  RFDSDVG YRAVT LG P AEYWNSQK+ LE  RA +DT CRHNY +    T+QRR
Sbjct: 64  EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           VEP VT+ P+RT+ L HHNLLVCSV  FYP  I+VRWFRN QEE  GVVST LI+NGDWT
Sbjct: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ ++QKG
Sbjct: 244 AGLFIYFKNQKG 255


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  331 bits (848), Expect = 5e-91
 Identities = 158/252 (62%), Positives = 197/252 (78%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE+ RFDSDVG YRAVT LG P AE WNSQK++LE  R ++DTVCRHNY +    T+QRR
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  331 bits (848), Expect = 5e-91
 Identities = 158/252 (62%), Positives = 197/252 (78%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE+ RFDSDVG YRAVT LG P AE WNSQK++LE  R ++DTVCRHNY +    T+QRR
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  330 bits (846), Expect = 8e-91
 Identities = 158/252 (62%), Positives = 197/252 (78%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +  +T+ L +LS+P+A   D+   F++Q K  C+F NGTERVR + RY YN+
Sbjct: 4   LKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYFYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ RA +DT CRHNY +    T+QRR
Sbjct: 64  EESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V+P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWF N QEE  G+VST LI+NGDWT
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  329 bits (843), Expect = 2e-90
 Identities = 159/251 (63%), Positives = 194/251 (77%), Gaps = 2/251 (0%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++    R   +T +L +L T V +GR +PE++++Q +  CY  NGT+R   + RYIYNR
Sbjct: 4   LQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQRF--LERYIYNR 61

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE+ARFDSDVG +RAVT LG PAAEYWNSQK++LE  RA  D +CRHNY+L    TLQRR
Sbjct: 62  EEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTLQRR 121

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V+P V +SPS+   L HHNLLVC VTDFYP  I+VRWF N QEET GVVST LIRNGDWT
Sbjct: 122 VQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWT 181

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQILVMLEMTPQ+GDVYTC VEH SL +P+ VEW+AQS+SA+SK L+G GGFVLGLI  G
Sbjct: 182 FQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLIICG 241

Query: 247 LGLIIHHRSQK 257
           +G+ +H RS+K
Sbjct: 242 VGIFMHRRSKK 252


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  328 bits (841), Expect = 3e-90
 Identities = 160/260 (61%), Positives = 195/260 (75%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           LR+PGG  +A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + RY +N+
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ R  +D  CRHNY +    T+QRR
Sbjct: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE TGVVST LI NGDWT
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKGEEPQGKRG 266
            GL I+ R+QKG      RG
Sbjct: 244 AGLFIYFRNQKGHSGLQPRG 263


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  323 bits (829), Expect = 8e-89
 Identities = 155/252 (61%), Positives = 194/252 (76%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+ +A   D+   F+   K  C+F NGTERVR + R+ +N+
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERHFHNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EEYARFDSDVG YRAV  LG P AEYWNSQK++LE+ R ++D  CRHNY +    T+QRR
Sbjct: 64  EEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDWT
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEW A+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  322 bits (824), Expect = 3e-88
 Identities = 159/261 (60%), Positives = 195/261 (74%), Gaps = 1/261 (0%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRGVTRYIYN 65
           LR+PGG  +A +T+ L +LS+P+A   D+     ++     C+F NGTERVR + RY +N
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63

Query: 66  REEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQR 125
           +EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ R  +D  CRHNY +    T+QR
Sbjct: 64  QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123

Query: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDW 185
           RV P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE TGVVST LI NGDW
Sbjct: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183

Query: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
           TFQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243

Query: 246 GLGLIIHHRSQKGEEPQGKRG 266
           G GL I+ R+QKG      RG
Sbjct: 244 GAGLFIYFRNQKGHSGLQPRG 264


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  319 bits (817), Expect = 2e-87
 Identities = 154/252 (61%), Positives = 192/252 (76%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+ +A   D+   F+   K  C+F NGTERVR + RY +N+
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYFHNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE+ RFDSDVG YRAVT LG P AE WNSQK++LE+ R  +D  CRHNY +    T+QRR
Sbjct: 64  EEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDWT
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ + + VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  319 bits (817), Expect = 2e-87
 Identities = 154/253 (60%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRGVTRYIYN 65
           L++PGG  +A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R+ +N
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63

Query: 66  REEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQR 125
           +EEYARFDSDVG YRAV  LG P AEYWNSQK++LE+ R ++D  CRHNY +    T+QR
Sbjct: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123

Query: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDW 185
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDW
Sbjct: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183

Query: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
           TFQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243

Query: 246 GLGLIIHHRSQKG 258
           G GL I+ R+QKG
Sbjct: 244 GAGLFIYFRNQKG 256


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  311 bits (797), Expect = 4e-85
 Identities = 147/220 (66%), Positives = 178/220 (80%)

Query: 39  FVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98
           F+ Q K  C+F NGTERV  + RYIYN+EEYAR++SD+G Y+AVT LG P AEYWNSQK+
Sbjct: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107

Query: 99  VLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158
           +LER RAE+DT CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167

Query: 159 IKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIV 218
           I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ +P+ V
Sbjct: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227

Query: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  309 bits (792), Expect = 2e-84
 Identities = 146/220 (66%), Positives = 176/220 (80%)

Query: 39  FVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98
           F++Q K  C+F NGTERV+ + R  YN+EE+ RFDSDVG YRAVT LG P AE WNSQK+
Sbjct: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93

Query: 99  VLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158
           +LE  R ++DTVCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153

Query: 159 IKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIV 218
           I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ +P+ V
Sbjct: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213

Query: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  309 bits (792), Expect = 2e-84
 Identities = 146/220 (66%), Positives = 176/220 (80%)

Query: 39  FVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98
           F++Q K  C+F NGTERV+ + R  YN+EE+ RFDSDVG YRAVT LG P AE WNSQK+
Sbjct: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93

Query: 99  VLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158
           +LE  R ++DTVCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153

Query: 159 IKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIV 218
           I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ +P+ V
Sbjct: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213

Query: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  296 bits (758), Expect = 1e-80
 Identities = 144/244 (59%), Positives = 181/244 (74%)

Query: 15  VATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDS 74
           V  + + L  L + + +G DSPEDFV Q K  CYFTNGTE+V+ V R+I+N EEY RFDS
Sbjct: 9   VVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDS 68

Query: 75  DVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTIS 134
           DVG++ A+T LG P AE WNS+ ++LER+R  +D VCRHNY+L    T+ R+V+P VT+ 
Sbjct: 69  DVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVY 128

Query: 135 PSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLE 194
           P RT  L+ HNLL CSVT FYP  IK++WF N QEE  GV+ST  IRNGDWTFQ +VMLE
Sbjct: 129 PERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLE 188

Query: 195 MTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHR 254
           MTP+ G VYTC V+H SL +P+ VEWRAQSE +  KMLSGI  F+LGLIFL +G++I  R
Sbjct: 189 MTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLR 248

Query: 255 SQKG 258
           +QKG
Sbjct: 249 AQKG 252


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  275 bits (704), Expect = 2e-74
 Identities = 143/252 (56%), Positives = 179/252 (71%), Gaps = 13/252 (5%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EE+ RFDSDVG YRAVT LG P AE    Q ++L          C  +    L   L   
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----------CLPD-SFPLPCFLL-- 110

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI+NGDWT
Sbjct: 111 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 170

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 171 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 230

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 231 AGLFIYFRNQKG 242


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  248 bits (632), Expect = 6e-66
 Identities = 118/177 (66%), Positives = 137/177 (77%)

Query: 36  PEDFVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNS 95
           P  F+ Q K  C+F NGTERVR + RY Y++EEY RFDSDVG YRAVT LG P AEYWNS
Sbjct: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104

Query: 96  QKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155
           QK++LE+ RA +DT CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164

Query: 156 PAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL 212
           P  I+VRWFRN QEE TGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL
Sbjct: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSL 221


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  185 bits (470), Expect = 3e-47
 Identities = 93/179 (51%), Positives = 121/179 (67%), Gaps = 6/179 (3%)

Query: 86  GPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQ------RRVEPTVTISPSRTE 139
           G P AE+    +E+      +         +L LR  ++        ++P  T+ P++TE
Sbjct: 52  GRPQAEHLPEAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTE 111

Query: 140 ALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQR 199
            L+H N LVCSV+ FYP  I+VRWF+N QEE   VVS  LI+NGDWTFQ LVMLE  P+ 
Sbjct: 112 PLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRS 171

Query: 200 GDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258
           G+VYTC VEHPS+ +P+ VEW A++ESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 172 GEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 230


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  137 bits (346), Expect = 8e-33
 Identities = 67/120 (55%), Positives = 90/120 (75%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERV  + RYIYN+
Sbjct: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
           EEYAR++SD+G Y+AVT LG P AEYWNSQK++LER RAE+DT CR+NY +    T+QRR
Sbjct: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,056,371
Number of Sequences: 37866
Number of extensions: 470580
Number of successful extensions: 1571
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1447
Number of HSP's gapped (non-prelim): 121
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.