Search of human proteins with 239740916

Search of human proteins with 239740916

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo
sapiens]
         (255 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]    517   e-147
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa...   515   e-146
gi|113430811 PREDICTED: similar to major histocompatibility comp...   513   e-146
gi|169217612 PREDICTED: similar to major histocompatibility comp...   499   e-142
gi|239740747 PREDICTED: similar to major histocompatibility comp...   499   e-142
gi|239740697 PREDICTED: similar to major histocompatibility comp...   499   e-142
gi|239740861 PREDICTED: similar to major histocompatibility comp...   481   e-136
gi|239513953 PREDICTED: similar to major histocompatibility comp...   481   e-136
gi|18426975 major histocompatibility complex, class II, DQ alpha...   468   e-132
gi|11095447 major histocompatibility complex, class II, DQ alpha...   463   e-131
gi|24797074 major histocompatibility complex, class II, DP alpha...   297   5e-81
gi|4504401 major histocompatibility complex, class II, DO alpha ...   294   4e-80
gi|169218140 PREDICTED: similar to major histocompatibility comp...   285   2e-77
gi|52426774 major histocompatibility complex, class II, DR alpha...   276   1e-74
gi|239752547 PREDICTED: similar to major histocompatibility comp...   240   1e-63
gi|18765715 major histocompatibility complex, class II, DM alpha...   101   7e-22
gi|239740859 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239740857 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239758095 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239740749 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...    69   3e-12
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...    69   3e-12
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...    69   3e-12
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...    69   3e-12
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...    69   3e-12
gi|155030211 major histocompatibility complex, class II, DR beta...    69   4e-12
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...    69   5e-12
gi|18641375 major histocompatibility complex, class II, DR beta ...    69   5e-12
gi|52630344 major histocompatibility complex, class II, DR beta ...    68   7e-12
gi|239758090 PREDICTED: major histocompatibility complex, class ...    68   7e-12

>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
          Length = 255

 Score =  517 bits (1332), Expect = e-147
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 255

 Score =  515 bits (1326), Expect = e-146
 Identities = 254/255 (99%), Positives = 254/255 (99%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|113430811 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 255

 Score =  513 bits (1321), Expect = e-146
 Identities = 253/255 (99%), Positives = 253/255 (99%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|169217612 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
          Length = 254

 Score =  499 bits (1285), Expect = e-142
 Identities = 247/255 (96%), Positives = 251/255 (98%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740747 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  499 bits (1285), Expect = e-142
 Identities = 247/255 (96%), Positives = 251/255 (98%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740697 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  499 bits (1285), Expect = e-142
 Identities = 247/255 (96%), Positives = 251/255 (98%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740861 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  481 bits (1237), Expect = e-136
 Identities = 238/255 (93%), Positives = 245/255 (96%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSA+E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTV II
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239513953 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  481 bits (1237), Expect = e-136
 Identities = 238/255 (93%), Positives = 245/255 (96%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSA+E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTV II
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
           precursor [Homo sapiens]
          Length = 255

 Score =  468 bits (1205), Expect = e-132
 Identities = 230/255 (90%), Positives = 240/255 (94%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKET W+ P F +F  FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSADEIYDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGL+GIVVGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240

Query: 241 RGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 241 QGLRSVGASRHQGPL 255


>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
           [Homo sapiens]
          Length = 255

 Score =  463 bits (1192), Expect = e-131
 Identities = 226/255 (88%), Positives = 239/255 (93%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQY+HEFDGDEEFYV
Sbjct: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLE KETVWQLP+F +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTET+VCALGLSVGL+GIVVGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240

Query: 241 RGLRSVGASRHQGPL 255
           +GLRSVGASRHQG L
Sbjct: 241 QGLRSVGASRHQGLL 255


>gi|24797074 major histocompatibility complex, class II, DP alpha 1
           precursor [Homo sapiens]
          Length = 260

 Score =  297 bits (761), Expect = 5e-81
 Identities = 147/251 (58%), Positives = 187/251 (74%), Gaps = 1/251 (0%)

Query: 5   KALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYVDLER 64
           +A++L AL+L  ++S  G   I ADHV++Y     Q++ P+G++  EFD DE FYVDL++
Sbjct: 11  RAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDEDEMFYVDLDK 69

Query: 65  KETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVT 124
           KETVW L  F +   F+ Q  L NIA+L +NLN +I+RSN T ATN+ PEVTVF K PV 
Sbjct: 70  KETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVE 129

Query: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSAD 184
           LGQPNTLIC +D  FPPV+N+TWL NG  VTEGV+E+ FL ++D+SF K  YLTF+PSA+
Sbjct: 130 LGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAE 189

Query: 185 EIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLIIRGLR 244
           + YDC+VEHWGLD+PLLKHWE + P  M E TETV+CALGL +GLVGI+VGTVLII+ LR
Sbjct: 190 DFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLR 249

Query: 245 SVGASRHQGPL 255
           S    R QG L
Sbjct: 250 SGHDPRAQGTL 260


>gi|4504401 major histocompatibility complex, class II, DO alpha
           precursor [Homo sapiens]
          Length = 250

 Score =  294 bits (753), Expect = 4e-80
 Identities = 141/242 (58%), Positives = 178/242 (73%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ++HEFD ++ F V
Sbjct: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DL++ E VW+LP F  F RFDPQ  L  IA +K +L+I+++RSN + A N  P VTV  K
Sbjct: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTVLII
Sbjct: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240

Query: 241 RG 242
            G
Sbjct: 241 MG 242


>gi|169218140 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 153

 Score =  285 bits (730), Expect = 2e-77
 Identities = 139/147 (94%), Positives = 141/147 (95%)

Query: 109 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 168
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66

Query: 169 HSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVG 228
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVG
Sbjct: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126

Query: 229 LVGIVVGTVLIIRGLRSVGASRHQGPL 255
           LVGIVVGTV IIRGLRSVGASRHQGPL
Sbjct: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153


>gi|52426774 major histocompatibility complex, class II, DR alpha
           precursor [Homo sapiens]
          Length = 254

 Score =  276 bits (706), Expect = 1e-74
 Identities = 138/255 (54%), Positives = 173/255 (67%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           M ++   +LG   +  +MS      I  +HV       Y +   SG++  +FDGDE F+V
Sbjct: 1   MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQA-EFYLNPDQSGEFMFDFDGDEIFHV 59

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           D+ +KETVW+L  F RF  F+ Q AL NIAV K NL I+ KRSN T  TN  PEVTV + 
Sbjct: 60  DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPV L +PN LIC +D   PPVVN+TWL NG  VT GVSET FL + DH F K  YL FL
Sbjct: 120 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS +++YDC+VEHWGLDEPLLKHWE + P+P+ E TE VVCALGL+VGLVGI++GT+ II
Sbjct: 180 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 239

Query: 241 RGLRSVGASRHQGPL 255
           +GLR   A+  +GPL
Sbjct: 240 KGLRKSNAAERRGPL 254


>gi|239752547 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 130

 Score =  240 bits (612), Expect = 1e-63
 Identities = 120/131 (91%), Positives = 125/131 (95%), Gaps = 1/131 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DL RKETVW LP+ R+F RFDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTL 131
           SPVTLGQPN L
Sbjct: 120 SPVTLGQPNIL 130


>gi|18765715 major histocompatibility complex, class II, DM alpha
           precursor [Homo sapiens]
          Length = 261

 Score =  101 bits (251), Expect = 7e-22
 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 19/211 (9%)

Query: 40  QSYGPSGQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRR---------FDPQFALTNIA 90
           Q   PS   S  +D D+ F+ D  +   V +LP F  + +         FD +F    I 
Sbjct: 51  QDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQ 110

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
            +   L+  I  S         P   VF+  P+  G+PNTL+C V N+FPP++ + W   
Sbjct: 111 QIGPKLDGKIPVSRG------FPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--Q 162

Query: 151 GHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIP 209
            HSV  EG   T   +    SF   SYL F P   +I+ C V H       + +W P   
Sbjct: 163 HHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNA 222

Query: 210 TPMSELTETVVCALGLSVGLVGIVVGTVLII 240
            P S+L E V+C +   +G++GI+VG VLII
Sbjct: 223 LP-SDLLENVLCGVAFGLGVLGIIVGIVLII 252


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 93  KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152
           +HN  +V    + T      P+VTV+      L   N L+C V   +P  + + W  NG 
Sbjct: 110 RHNYGVV---ESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQ 166

Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPM 212
               GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +  
Sbjct: 167 EEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 226

Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQG 253
           S++   V    G  +GL+ +  G  +  R  +     + +G
Sbjct: 227 SKMLSGVG---GFVLGLLFLGAGLFIYFRNQKGHSGLQPRG 264


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 93  KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152
           +HN  +V    + T      P+VTV+      L   N L+C V   +P  + + W  NG 
Sbjct: 109 RHNYGVV---ESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQ 165

Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPM 212
               GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +  
Sbjct: 166 EEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 225

Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQG 253
           S++   V    G  +GL+ +  G  +  R  +     + +G
Sbjct: 226 SKMLSGVG---GFVLGLLFLGAGLFIYFRNQKGHSGLQPRG 263


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  + ++   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G   T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVL 238
             S++   +    G  +GL+ + +G ++
Sbjct: 227 AQSKMLSGIG---GFVLGLIFLGLGLII 251


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  + ++   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G   T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVL 238
             S++   +    G  +GL+ + +G ++
Sbjct: 227 AQSKMLSGIG---GFVLGLIFLGLGLII 251


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 105 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 161

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 162 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 221

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 222 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 249


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 105 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 161

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +
Sbjct: 162 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 221

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 222 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 249


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 93  KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152
           +HN  +V    + T      P+VTV+      L   N L+C V   +P  + + W  NG 
Sbjct: 109 RHNYGVV---ESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQ 165

Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPM 212
               G+  T  +   D +F  +  L  +P + E+Y C+VEH  +  PL   W     +  
Sbjct: 166 EEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 225

Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIR 241
           S++   V    G  +GL+ +  G  +  R
Sbjct: 226 SKMLSGVG---GFVLGLLFLGAGLFIYFR 251


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score = 68.6 bits (166), Expect = 5e-12
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 113 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 172

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++   V    G  +GL+ +
Sbjct: 173 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVG---GFVLGLLFL 229

Query: 233 VVGTVLIIR 241
             G  +  R
Sbjct: 230 GAGLFIYFR 238


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score = 68.6 bits (166), Expect = 5e-12
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+     TL   N L+C V+  +P  + + W  N      GV  T  +   D +F 
Sbjct: 126 PKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGI 232
            +  L  +P + E+Y C+VEH  +  PL   W  +  +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVLIIRGL 243
           V+G + +  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++   V    G  +GL+ +
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVG---GFVLGLLFL 242

Query: 233 VVGTVLIIR 241
             G  +  R
Sbjct: 243 GTGLFIYFR 251


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 138 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 197

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++   V    G  +GL+ +
Sbjct: 198 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVG---GFVLGLLFL 254

Query: 233 VVGTVLIIR 241
             G  +  R
Sbjct: 255 GTGLFIYFR 263


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,694,457
Number of Sequences: 37866
Number of extensions: 421171
Number of successful extensions: 1084
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 115
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.