Search of human proteins with 239740861

Search of human proteins with 239740861

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740861 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
         (254 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740861 PREDICTED: similar to major histocompatibility comp...   516   e-147
gi|239513953 PREDICTED: similar to major histocompatibility comp...   516   e-147
gi|169217612 PREDICTED: similar to major histocompatibility comp...   484   e-137
gi|239740747 PREDICTED: similar to major histocompatibility comp...   484   e-137
gi|239740697 PREDICTED: similar to major histocompatibility comp...   484   e-137
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]    481   e-136
gi|113430811 PREDICTED: similar to major histocompatibility comp...   480   e-136
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa...   478   e-135
gi|18426975 major histocompatibility complex, class II, DQ alpha...   454   e-128
gi|11095447 major histocompatibility complex, class II, DQ alpha...   445   e-125
gi|169218140 PREDICTED: similar to major histocompatibility comp...   298   4e-81
gi|24797074 major histocompatibility complex, class II, DP alpha...   291   5e-79
gi|4504401 major histocompatibility complex, class II, DO alpha ...   284   5e-77
gi|239752547 PREDICTED: similar to major histocompatibility comp...   265   4e-71
gi|52426774 major histocompatibility complex, class II, DR alpha...   264   5e-71
gi|18765715 major histocompatibility complex, class II, DM alpha...    90   2e-18
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|18641375 major histocompatibility complex, class II, DR beta ...    70   2e-12
gi|52630344 major histocompatibility complex, class II, DR beta ...    70   2e-12
gi|239758095 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239758090 PREDICTED: major histocompatibility complex, class ...    70   2e-12
gi|239740855 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239740853 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239740749 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...    69   3e-12

>gi|239740861 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  516 bits (1328), Expect = e-147
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120
           DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS
Sbjct: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120

Query: 121 PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP 180
           PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP
Sbjct: 121 PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP 180

Query: 181 SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR 240
           SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR
Sbjct: 181 SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR 240

Query: 241 GLRSVGASRHQGPL 254
           GLRSVGASRHQGPL
Sbjct: 241 GLRSVGASRHQGPL 254


>gi|239513953 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  516 bits (1328), Expect = e-147
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120
           DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS
Sbjct: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120

Query: 121 PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP 180
           PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP
Sbjct: 121 PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP 180

Query: 181 SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR 240
           SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR
Sbjct: 181 SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR 240

Query: 241 GLRSVGASRHQGPL 254
           GLRSVGASRHQGPL
Sbjct: 241 GLRSVGASRHQGPL 254


>gi|169217612 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
          Length = 254

 Score =  484 bits (1245), Expect = e-137
 Identities = 238/254 (93%), Positives = 244/254 (96%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ+THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120
           DL RKETVW LP+  + RFDPQFALTNIAVLKHNLN LIKRSNSTAATNEVPEVTVFSKS
Sbjct: 61  DLERKETVWKLPLFHRLRFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSKS 120

Query: 121 PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP 180
           PVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT LP
Sbjct: 121 PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLP 180

Query: 181 SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR 240
           SA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTV IIR
Sbjct: 181 SADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLIIR 240

Query: 241 GLRSVGASRHQGPL 254
           GLRSVGASRHQGPL
Sbjct: 241 GLRSVGASRHQGPL 254


>gi|239740747 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  484 bits (1245), Expect = e-137
 Identities = 238/254 (93%), Positives = 244/254 (96%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ+THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120
           DL RKETVW LP+  + RFDPQFALTNIAVLKHNLN LIKRSNSTAATNEVPEVTVFSKS
Sbjct: 61  DLERKETVWKLPLFHRLRFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSKS 120

Query: 121 PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP 180
           PVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT LP
Sbjct: 121 PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLP 180

Query: 181 SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR 240
           SA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTV IIR
Sbjct: 181 SADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLIIR 240

Query: 241 GLRSVGASRHQGPL 254
           GLRSVGASRHQGPL
Sbjct: 241 GLRSVGASRHQGPL 254


>gi|239740697 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  484 bits (1245), Expect = e-137
 Identities = 238/254 (93%), Positives = 244/254 (96%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ+THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120
           DL RKETVW LP+  + RFDPQFALTNIAVLKHNLN LIKRSNSTAATNEVPEVTVFSKS
Sbjct: 61  DLERKETVWKLPLFHRLRFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSKS 120

Query: 121 PVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLP 180
           PVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT LP
Sbjct: 121 PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLP 180

Query: 181 SAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIR 240
           SA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTV IIR
Sbjct: 181 SADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLIIR 240

Query: 241 GLRSVGASRHQGPL 254
           GLRSVGASRHQGPL
Sbjct: 241 GLRSVGASRHQGPL 254


>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
          Length = 255

 Score =  481 bits (1237), Expect = e-136
 Identities = 238/255 (93%), Positives = 245/255 (96%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
           DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
           SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239
           PSA+E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 240 RGLRSVGASRHQGPL 254
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|113430811 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 255

 Score =  480 bits (1235), Expect = e-136
 Identities = 238/255 (93%), Positives = 245/255 (96%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
           DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
           SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239
           PS +E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTV II
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 240 RGLRSVGASRHQGPL 254
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 255

 Score =  478 bits (1231), Expect = e-135
 Identities = 237/255 (92%), Positives = 244/255 (95%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
           DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
           SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239
           PS +E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTV II
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 240 RGLRSVGASRHQGPL 254
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
           precursor [Homo sapiens]
          Length = 255

 Score =  454 bits (1167), Expect = e-128
 Identities = 227/255 (89%), Positives = 235/255 (92%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQYTHEFDGDEQFYV
Sbjct: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
           DL RKET W  P   +F  FDPQ AL N+AV KHNLN +IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120

Query: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
           SPVTLGQPN LICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239
           PSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGL+GIVVGTVFII
Sbjct: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240

Query: 240 RGLRSVGASRHQGPL 254
           +GLRSVGASRHQGPL
Sbjct: 241 QGLRSVGASRHQGPL 255


>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
           [Homo sapiens]
          Length = 255

 Score =  445 bits (1144), Expect = e-125
 Identities = 220/255 (86%), Positives = 235/255 (92%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQYTHEFDGDE+FYV
Sbjct: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60

Query: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
           DL  KETVW LP+  +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120

Query: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
            PVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239
           PSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET+VCALGLSVGL+GIVVGTVFII
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240

Query: 240 RGLRSVGASRHQGPL 254
           +GLRSVGASRHQG L
Sbjct: 241 QGLRSVGASRHQGLL 255


>gi|169218140 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 153

 Score =  298 bits (762), Expect = 4e-81
 Identities = 146/147 (99%), Positives = 146/147 (99%)

Query: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167
           T EVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66

Query: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 227
           HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126

Query: 228 LVGIVVGTVFIIRGLRSVGASRHQGPL 254
           LVGIVVGTVFIIRGLRSVGASRHQGPL
Sbjct: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153


>gi|24797074 major histocompatibility complex, class II, DP alpha 1
           precursor [Homo sapiens]
          Length = 260

 Score =  291 bits (744), Expect = 5e-79
 Identities = 147/251 (58%), Positives = 184/251 (73%), Gaps = 2/251 (0%)

Query: 5   KALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYVDLGR 64
           +A++L AL+L  ++S  G   I ADHV++Y     Q++ P+G++  EFD DE FYVDL +
Sbjct: 11  RAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDEDEMFYVDLDK 69

Query: 65  KETVWCLPVLRQ-FRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVT 123
           KETVW L    Q F F+ Q  L NIA+L +NLN+LI+RSN T ATN+ PEVTVF K PV 
Sbjct: 70  KETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVE 129

Query: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAE 183
           LGQPN LIC +D  FPPV+N+TWL NG  VTEGV+E+ FL ++D+SF K  YLT +PSAE
Sbjct: 130 LGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAE 189

Query: 184 ESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIRGLR 243
           + YDC+VEHWGLD+PLLKHWE + P  M E TETV+CALGL +GLVGI+VGTV II+ LR
Sbjct: 190 DFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLR 249

Query: 244 SVGASRHQGPL 254
           S    R QG L
Sbjct: 250 SGHDPRAQGTL 260


>gi|4504401 major histocompatibility complex, class II, DO alpha
           precursor [Homo sapiens]
          Length = 250

 Score =  284 bits (727), Expect = 5e-77
 Identities = 141/242 (58%), Positives = 172/242 (71%), Gaps = 1/242 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ+THEFD ++ F V
Sbjct: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60

Query: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
           DL + E VW LP    F RFDPQ  L  IA +K +L+ L++RSN + A N  P VTV  K
Sbjct: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120

Query: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
           S V LGQPNILIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL  +
Sbjct: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180

Query: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239
           PSAE+ YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTV II
Sbjct: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240

Query: 240 RG 241
            G
Sbjct: 241 MG 242


>gi|239752547 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 130

 Score =  265 bits (676), Expect = 4e-71
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120
           DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS
Sbjct: 61  DLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKS 120

Query: 121 PVTLGQPNIL 130
           PVTLGQPNIL
Sbjct: 121 PVTLGQPNIL 130


>gi|52426774 major histocompatibility complex, class II, DR alpha
           precursor [Homo sapiens]
          Length = 254

 Score =  264 bits (675), Expect = 5e-71
 Identities = 135/255 (52%), Positives = 170/255 (66%), Gaps = 2/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
           M ++   +LG   +  +MS      I  +HV       Y +   SG++  +FDGDE F+V
Sbjct: 1   MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQA-EFYLNPDQSGEFMFDFDGDEIFHV 59

Query: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
           D+ +KETVW L    +F  F+ Q AL NIAV K NL  + KRSN T  TN  PEVTV + 
Sbjct: 60  DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 119

Query: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
           SPV L +PN+LIC +D   PPVVN+TWL NG  VT GVSET FL + DH F K  YL  L
Sbjct: 120 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 179

Query: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239
           PS E+ YDC+VEHWGLD+PLLKHWE + P+P+ E TE VVCALGL+VGLVGI++GT+FII
Sbjct: 180 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 239

Query: 240 RGLRSVGASRHQGPL 254
           +GLR   A+  +GPL
Sbjct: 240 KGLRKSNAAERRGPL 254


>gi|18765715 major histocompatibility complex, class II, DM alpha
           precursor [Homo sapiens]
          Length = 261

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 63/211 (29%), Positives = 92/211 (43%), Gaps = 20/211 (9%)

Query: 40  QSYGPSGQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFR----------FDPQFALTNIA 89
           Q   PS   +  +D D+ F+ D  +   V  LP    +           FD +F    I 
Sbjct: 51  QDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQ 110

Query: 90  VLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSN 149
            +   L+  I  S         P   VF+  P+  G+PN L+C V N+FPP++ + W   
Sbjct: 111 QIGPKLDGKIPVSRG------FPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--Q 162

Query: 150 GHSV-TEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIP 208
            HSV  EG   T   +    SF   SYL   P   + + C V H       + +W P   
Sbjct: 163 HHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNA 222

Query: 209 APMSELTETVVCALGLSVGLVGIVVGTVFII 239
            P S+L E V+C +   +G++GI+VG V II
Sbjct: 223 LP-SDLLENVLCGVAFGLGVLGIIVGIVLII 252


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 113 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 172

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 173 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 222

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 223 VLGLLFLGAGL 233


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 124 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 183

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 184 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 233

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 234 VLGLLFLGAGL 244


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 124 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 183

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 184 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 233

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 234 VLGLLFLGAGL 244


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           P+VTV+     TL   N+L+C V+  +P  + + W  N      GV  T  +   D +F 
Sbjct: 126 PKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQ 185

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W  +  +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLS----------GVGGF 235

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           P+VTV+      L   N+L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS----------GVGGF 235

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 236 VLGLLFLGTGL 246


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 90  VLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSN 149
           V +HN    ++   +T      P VT+       L   N+L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 150 GHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPA 209
           G   T GV  T  +   D +F  +  L + P   + Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 210 PMSELTETVVCALGLSVGLVGIVVGTVFIIRGL 242
             S++            G+ G V+G +F+  GL
Sbjct: 227 AQSKMLS----------GIGGFVLGLIFLGLGL 249


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           P+VTV+      L   N+L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 138 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 197

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 198 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS----------GVGGF 247

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 248 VLGLLFLGTGL 258


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           P+VTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 127 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 186

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 187 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLS----------GVGGF 236

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 237 VLGLLFLGAGL 247


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           P+VTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLS----------GVGGF 235

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 90  VLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSN 149
           V +HN    ++   +T      P VT+       L   N+L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 150 GHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPA 209
           G   T GV  T  +   D +F  +  L + P   + Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 210 PMSELTETVVCALGLSVGLVGIVVGTVFIIRGL 242
             S++            G+ G V+G +F+  GL
Sbjct: 227 AQSKMLS----------GIGGFVLGLIFLGLGL 249


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 112 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 171
           P+VTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQ 185

Query: 172 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 231
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 232 VVGTVFIIRGL 242
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,547,263
Number of Sequences: 37866
Number of extensions: 410832
Number of successful extensions: 1033
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 123
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.