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Search of human proteins with 239740859
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740859 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
(267 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740859 PREDICTED: similar to major histocompatibility comp... 555 e-158
gi|239740857 PREDICTED: similar to major histocompatibility comp... 530 e-151
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 509 e-145
gi|239740855 PREDICTED: similar to major histocompatibility comp... 501 e-142
gi|155030211 major histocompatibility complex, class II, DR beta... 498 e-141
gi|17986005 major histocompatibility complex, class II, DR beta ... 487 e-138
gi|239740853 PREDICTED: similar to major histocompatibility comp... 485 e-137
gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 477 e-135
gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 477 e-135
gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 473 e-133
gi|18641375 major histocompatibility complex, class II, DR beta ... 459 e-129
gi|52630344 major histocompatibility complex, class II, DR beta ... 456 e-129
gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 423 e-119
gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 423 e-119
gi|239758092 PREDICTED: similar to HLA class II histocompatibili... 412 e-115
gi|239758090 PREDICTED: major histocompatibility complex, class ... 407 e-114
gi|239758095 PREDICTED: similar to major histocompatibility comp... 332 2e-91
gi|239740749 PREDICTED: similar to major histocompatibility comp... 332 2e-91
gi|169217452 PREDICTED: similar to HLA class II histocompatibili... 330 8e-91
gi|239748788 PREDICTED: similar to major histocompatibility comp... 330 8e-91
gi|239740863 PREDICTED: similar to major histocompatibility comp... 329 1e-90
gi|239513955 PREDICTED: similar to major histocompatibility comp... 329 1e-90
gi|169168591 PREDICTED: similar to major histocompatibility comp... 322 2e-88
gi|239740918 PREDICTED: similar to major histocompatibility comp... 322 3e-88
gi|150418002 major histocompatibility complex, class II, DQ beta... 320 8e-88
gi|239740920 PREDICTED: similar to major histocompatibility comp... 320 8e-88
gi|24797076 major histocompatibility complex, class II, DP beta ... 308 3e-84
gi|4504403 major histocompatibility complex, class II, DO beta p... 276 1e-74
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa... 255 2e-68
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa... 186 2e-47
>gi|239740859 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 555 bits (1430), Expect = e-158
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT
Sbjct: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN
Sbjct: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
>gi|239740857 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 530 bits (1365), Expect = e-151
Identities = 260/267 (97%), Positives = 261/267 (97%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTR + L TSECHFFNGTERVRYLDRY
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRF-LEYSTSECHFFNGTERVRYLDRY 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT
Sbjct: 60 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN
Sbjct: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266
>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
Length = 266
Score = 509 bits (1311), Expect = e-145
Identities = 251/267 (94%), Positives = 254/267 (95%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTR + V ECHFFNGTERVR L+RY
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKF-ECHFFNGTERVRLLERY 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQ+R VD YCRHNYGV ESFT
Sbjct: 60 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN
Sbjct: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266
>gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 501 bits (1291), Expect = e-142
Identities = 242/267 (90%), Positives = 252/267 (94%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGS +A LTVTLMVLSS LA AGDTRRK TLW+ SECHFFNGTERVR+L+R+
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
FHNQEE RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQKRG+VDNYCRHNYGV ESFT
Sbjct: 61 FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
>gi|155030211 major histocompatibility complex, class II, DR beta 1
precursor [Homo sapiens]
Length = 266
Score = 498 bits (1283), Expect = e-141
Identities = 242/267 (90%), Positives = 250/267 (93%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGSCM LTVTLMVLSSPLAL+GDTR + LW P ECHFFNGTERVR+LDRY
Sbjct: 1 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRF-LWQPKRECHFFNGTERVRFLDRY 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
F+NQEE+VRFDSDVGEFRAVTELGRPDAEYWNSQKD+LEQ R VD YCRHNYGVVESFT
Sbjct: 60 FYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRV PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWF NGQEEK G+VSTGLI N
Sbjct: 120 VQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|17986005 major histocompatibility complex, class II, DR beta 3
precursor [Homo sapiens]
Length = 266
Score = 487 bits (1253), Expect = e-138
Identities = 241/267 (90%), Positives = 249/267 (93%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGS +A LTVTLMVLSS LA AGDTR + L + SECHFFNGTERVRYLDRY
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRF-LELRKSECHFFNGTERVRYLDRY 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
FHNQEE +RFDSDVGE+RAVTELGRP AE WNSQKDLLEQKRGRVDNYCRHNYGV ESFT
Sbjct: 60 FHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 120 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS LTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740853 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 485 bits (1249), Expect = e-137
Identities = 238/267 (89%), Positives = 249/267 (93%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGS +A LTVTLMVLSS LA AGDTR + L + SECHFFNGTERVR+L+R+
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRF-LELLKSECHFFNGTERVRFLERH 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
FHNQEE RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQKRG+VDNYCRHNYGV ESFT
Sbjct: 60 FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 120 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 477 bits (1227), Expect = e-135
Identities = 233/267 (87%), Positives = 247/267 (92%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+ + LW +CHFFNGTERV++L+R
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRF-LWQGKYKCHFFNGTERVQFLERL 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+LE +RG+VD CRHNYGV ESFT
Sbjct: 60 FYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 120 VQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 477 bits (1227), Expect = e-135
Identities = 233/267 (87%), Positives = 247/267 (92%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+ + LW +CHFFNGTERV++L+R
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRF-LWQGKYKCHFFNGTERVQFLERL 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+LE +RG+VD CRHNYGV ESFT
Sbjct: 60 FYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 120 VQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-9 beta chain [Homo sapiens]
Length = 266
Score = 473 bits (1216), Expect = e-133
Identities = 234/267 (87%), Positives = 243/267 (91%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+ + L ECHFFNGTERVRYL R
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRF-LKQDKFECHFFNGTERVRYLHRG 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
+NQEENVRFDSDVGE+RAVTELGRP AE WNSQKD LE++R VD CRHNYGV ESFT
Sbjct: 60 IYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 120 VQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 240 LFLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|18641375 major histocompatibility complex, class II, DR beta 5
precursor [Homo sapiens]
Length = 266
Score = 459 bits (1181), Expect = e-129
Identities = 226/267 (84%), Positives = 240/267 (89%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGS MA LTVTLMVLSSPLALAGDTR + L ECHFFNGTERVR+L R
Sbjct: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRF-LQQDKYECHFFNGTERVRFLHRD 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
+NQEE++RFDSDVGE+RAVTELGRPDAEYWNSQKD LE +R VD YCRHNYGV ESFT
Sbjct: 60 IYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRV PKVTVYP++TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEK GVVSTGLI N
Sbjct: 120 VQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA+SESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYF+NQKGHSGL P G +S
Sbjct: 240 LFLGAGLFIYFKNQKGHSGLHPTGLVS 266
>gi|52630344 major histocompatibility complex, class II, DR beta 4
precursor [Homo sapiens]
Length = 266
Score = 456 bits (1174), Expect = e-129
Identities = 224/267 (83%), Positives = 239/267 (89%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+ + L ECHF NGTERV L RY
Sbjct: 1 MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRF-LEQAKCECHFLNGTERVWNLIRY 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
+NQEE R++SD+GE++AVTELGRPDAEYWNSQKDLLE++R VD YCR+NYGVVESFT
Sbjct: 60 IYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFT 119
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
VQRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 120 VQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 179
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+W ARSESAQSKMLSGVGGFVLGL
Sbjct: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGL 239
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 240 LFLGTGLFIYFRNQKGHSGLQPTGLLS 266
>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 423 bits (1088), Expect = e-119
Identities = 203/230 (88%), Positives = 214/230 (93%)
Query: 38 LWVPTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDL 97
LW +CHFFNGTERV++L+R F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+
Sbjct: 35 LWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDI 94
Query: 98 LEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSI 157
LE +RG+VD CRHNYGV ESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSI
Sbjct: 95 LEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 154
Query: 158 EVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVE 217
EVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVE
Sbjct: 155 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVE 214
Query: 218 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 267
WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 215 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 423 bits (1088), Expect = e-119
Identities = 203/230 (88%), Positives = 214/230 (93%)
Query: 38 LWVPTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDL 97
LW +CHFFNGTERV++L+R F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+
Sbjct: 35 LWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDI 94
Query: 98 LEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSI 157
LE +RG+VD CRHNYGV ESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSI
Sbjct: 95 LEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 154
Query: 158 EVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVE 217
EVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVE
Sbjct: 155 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVE 214
Query: 218 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 267
WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 215 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain [Homo sapiens]
Length = 253
Score = 412 bits (1059), Expect = e-115
Identities = 212/267 (79%), Positives = 226/267 (84%), Gaps = 14/267 (5%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+ + LW +CHFFNGTERV++L+R
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRF-LWQGKYKCHFFNGTERVQFLERL 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
F+NQEE VRFDSDVGE+RAVTELGRP AE Q DLL C + + F
Sbjct: 60 FYNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----------CLPDSFPLPCFL 109
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
+ VHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 110 L---VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 166
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 167 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGL 226
Query: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 227 LFLGAGLFIYFRNQKGHSGLQPTGFLS 253
>gi|239758090 PREDICTED: major histocompatibility complex, class II,
DR beta 4 [Homo sapiens]
Length = 278
Score = 407 bits (1045), Expect = e-114
Identities = 194/224 (86%), Positives = 206/224 (91%)
Query: 44 ECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRG 103
ECHF NGTERV L RY +NQEE R++SD+GE++AVTELGRPDAEYWNSQKDLLE++R
Sbjct: 55 ECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRA 114
Query: 104 RVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFR 163
VD YCR+NYGVVESFTVQRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPGSIEVRWFR
Sbjct: 115 EVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFR 174
Query: 164 NGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSE 223
NGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+W ARSE
Sbjct: 175 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSE 234
Query: 224 SAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 267
SAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 235 SAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
>gi|239758095 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 332 bits (851), Expect = 2e-91
Identities = 166/261 (63%), Positives = 197/261 (75%), Gaps = 1/261 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PGG A +T+ L +LS+P+A D+ ++ C+F NGTERVR + R +N
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRLVSRSIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR VD CRHNY + T+QR
Sbjct: 66 REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRNGQEE GVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKGHSGLQPRG 264
G GL I+ R+QKG RG
Sbjct: 246 GLGLIIHHRSQKGEEPQGKRG 266
>gi|239740749 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 332 bits (851), Expect = 2e-91
Identities = 166/261 (63%), Positives = 197/261 (75%), Gaps = 1/261 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PGG A +T+ L +LS+P+A D+ ++ C+F NGTERVR + R +N
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRLVSRSIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR VD CRHNY + T+QR
Sbjct: 66 REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRNGQEE GVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKGHSGLQPRG 264
G GL I+ R+QKG RG
Sbjct: 246 GLGLIIHHRSQKGEEPQGKRG 266
>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-4 beta chain, partial [Homo sapiens]
Length = 223
Score = 330 bits (846), Expect = 8e-91
Identities = 154/169 (91%), Positives = 163/169 (96%)
Query: 44 ECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRG 103
ECHFFNGTERVR+LDRYF++QEE VRFDSDVGE+RAVTELGRPDAEYWNSQKDLLEQKR
Sbjct: 55 ECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRA 114
Query: 104 RVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFR 163
VD YCRHNYGV ESFTVQRRV+P+VTVYP+KTQPLQHHNLLVCSV+GFYPGSIEVRWFR
Sbjct: 115 AVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFR 174
Query: 164 NGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 212
NGQEEKTGVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 175 NGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
>gi|239748788 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 2 [Homo sapiens]
Length = 281
Score = 330 bits (846), Expect = 8e-91
Identities = 165/261 (63%), Positives = 197/261 (75%), Gaps = 1/261 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PGG +A +T+ L +LS+P+A D+ ++ C+F NGTERVR + R +N
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRLVSRSIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR VD CRHNY + T+QR
Sbjct: 66 REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE GVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKGHSGLQPRG 264
G GL I+ R+QKG RG
Sbjct: 246 GLGLIIHHRSQKGEEPQGKRG 266
>gi|239740863 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 329 bits (844), Expect = 1e-90
Identities = 165/261 (63%), Positives = 196/261 (75%), Gaps = 1/261 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PGG A +T+ L +LS+P+A D+ ++ C+F NGTERVR + R +N
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRLVSRSIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR VD CRHNY + T+QR
Sbjct: 66 REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE GVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKGHSGLQPRG 264
G GL I+ R+QKG RG
Sbjct: 246 GLGLIIHHRSQKGEEPQGKRG 266
>gi|239513955 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 329 bits (844), Expect = 1e-90
Identities = 165/261 (63%), Positives = 196/261 (75%), Gaps = 1/261 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PGG A +T+ L +LS+P+A D+ ++ C+F NGTERVR + R +N
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRLVSRSIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR VD CRHNY + T+QR
Sbjct: 66 REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE GVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKGHSGLQPRG 264
G GL I+ R+QKG RG
Sbjct: 246 GLGLIIHHRSQKGEEPQGKRG 266
>gi|169168591 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 1 [Homo sapiens]
Length = 261
Score = 322 bits (826), Expect = 2e-88
Identities = 159/253 (62%), Positives = 191/253 (75%), Gaps = 1/253 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PGG +A +T+ L +LS+P+A D+ C+F NGTERVR + RY +N
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFK-GMCYFTNGTERVRGVTRYIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE RFDSDVG +RAVT LG P AEYWNSQK++LE+ R VD CRHNY + T+QR
Sbjct: 66 REEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE GVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKG 256
G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258
>gi|239740918 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
Length = 281
Score = 322 bits (824), Expect = 3e-88
Identities = 159/261 (60%), Positives = 195/261 (74%), Gaps = 1/261 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PGG +A +T+ L +LS+P+A D+ ++ C+F NGTERVR + RY +N
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRGVTRYIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE RFDSDVG +RAVT LG P AEYWNSQK++LE+ R +D CRHNY + T+QR
Sbjct: 66 REEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE TGVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKGHSGLQPRG 264
G GL I+ R+QKG RG
Sbjct: 246 GLGLIIHHRSQKGEEPQGKRG 266
>gi|150418002 major histocompatibility complex, class II, DQ beta 1
precursor [Homo sapiens]
Length = 261
Score = 320 bits (820), Expect = 8e-88
Identities = 161/253 (63%), Positives = 188/253 (74%), Gaps = 1/253 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PG +A +T+ L +LSS LA D+ C+F NGTERVR + RY +N
Sbjct: 7 LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFK-GMCYFTNGTERVRLVTRYIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE RFDSDVG +RAVT GRPDAEYWNSQK++LE R +D CRHNY V +QR
Sbjct: 66 REEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE GVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKG 256
G GL I R+QKG
Sbjct: 246 GLGLIIRQRSQKG 258
>gi|239740920 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
Length = 261
Score = 320 bits (820), Expect = 8e-88
Identities = 157/253 (62%), Positives = 193/253 (76%), Gaps = 1/253 (0%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63
LR+PGG +A +T+ L +LS+P+A D+ ++ C+F NGTERVR + RY +N
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRGVTRYIYN 65
Query: 64 QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123
+EE RFDSDVG +RAVT LG P AEYWNSQK++LE+ R +D CRHNY + T+QR
Sbjct: 66 REEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQR 125
Query: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183
RV P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE TGVVST LI NGDW
Sbjct: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDW 185
Query: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243
TFQ LVMLE P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
Query: 244 GAGLFIYFRNQKG 256
G GL I+ R+QKG
Sbjct: 246 GLGLIIHHRSQKG 258
>gi|24797076 major histocompatibility complex, class II, DP beta 1
precursor [Homo sapiens]
Length = 258
Score = 308 bits (789), Expect = 3e-84
Identities = 154/259 (59%), Positives = 190/259 (73%), Gaps = 3/259 (1%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
M+ L++ LT LMVL + + + G + L+ EC+ FNGT+R +L+RY
Sbjct: 1 MMVLQVSAAPRTVALTALLMVLLTSV-VQGRATPENYLFQGRQECYAFNGTQR--FLERY 57
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
+N+EE RFDSDVGEFRAVTELGRP AEYWNSQKD+LE+KR D CRHNY + T
Sbjct: 58 IYNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMT 117
Query: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
+QRRV P+V V PSK PLQHHNLLVC V+ FYPGSI+VRWF NGQEE GVVST LI N
Sbjct: 118 LQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRN 177
Query: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
GDWTFQ LVMLE P+ G+VYTCQVEH S+ SP+TVEW+A+S+SA+SK L+G GGFVLGL
Sbjct: 178 GDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGL 237
Query: 241 LFLGAGLFIYFRNQKGHSG 259
+ G G+F++ R++K G
Sbjct: 238 IICGVGIFMHRRSKKVQRG 256
>gi|4504403 major histocompatibility complex, class II, DO beta
precursor [Homo sapiens]
Length = 273
Score = 276 bits (707), Expect = 1e-74
Identities = 137/253 (54%), Positives = 176/253 (69%), Gaps = 1/253 (0%)
Query: 12 MAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHNQEENVRFD 71
+ L V L L S + D+ + ++C+F NGTE+V+++ R+ N EE VRFD
Sbjct: 9 VVALLVNLTRLDSSMTQGTDSPEDFVIQAK-ADCYFTNGTEKVQFVVRFIFNLEEYVRFD 67
Query: 72 SDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTV 131
SDVG F A+T+LG+PDAE WNS+ DLLE+ R VD CRHNY + FTV R+V P+VTV
Sbjct: 68 SDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTV 127
Query: 132 YPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVML 191
YP +T L HNLL CSV+GFYPG I+++WF NGQEE+ GV+STG I NGDWTFQT+VML
Sbjct: 128 YPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVML 187
Query: 192 ETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYF 251
E P G VYTC V+H S+ SP++VEWRA+SE + KMLSG+ F+LGL+FL G+ I
Sbjct: 188 EMTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQL 247
Query: 252 RNQKGHSGLQPRG 264
R QKG+ Q G
Sbjct: 248 RAQKGYVRTQMSG 260
>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 241
Score = 255 bits (652), Expect = 2e-68
Identities = 122/140 (87%), Positives = 128/140 (91%)
Query: 125 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 184
+ PK T+YP+KT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEK VVS GLI NGDWT
Sbjct: 99 LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
Query: 185 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 244
FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
Query: 245 AGLFIYFRNQKGHSGLQPRG 264
GLFIYFRNQKGHSGLQP G
Sbjct: 219 TGLFIYFRNQKGHSGLQPTG 238
>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 140
Score = 186 bits (471), Expect = 2e-47
Identities = 92/124 (74%), Positives = 104/124 (83%), Gaps = 1/124 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+ + L ECHF NGTERV L RY
Sbjct: 1 MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRF-LEQAKCECHFLNGTERVWNLIRY 59
Query: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
+NQEE R++SD+GE++AVTELGRPDAEYWNSQKDLLE++R VD YCR+NYGVVESFT
Sbjct: 60 IYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFT 119
Query: 121 VQRR 124
VQRR
Sbjct: 120 VQRR 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,896,233
Number of Sequences: 37866
Number of extensions: 477416
Number of successful extensions: 1203
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 183
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.