Search of human proteins with 239740857

Search of human proteins with 239740857

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740857 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
         (266 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740857 PREDICTED: similar to major histocompatibility comp...   550   e-157
gi|239740859 PREDICTED: similar to major histocompatibility comp...   530   e-151
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   525   e-149
gi|155030211 major histocompatibility complex, class II, DR beta...   503   e-143
gi|17986005 major histocompatibility complex, class II, DR beta ...   502   e-142
gi|239740853 PREDICTED: similar to major histocompatibility comp...   500   e-142
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   487   e-138
gi|239740855 PREDICTED: similar to major histocompatibility comp...   485   e-137
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   485   e-137
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   485   e-137
gi|18641375 major histocompatibility complex, class II, DR beta ...   474   e-134
gi|52630344 major histocompatibility complex, class II, DR beta ...   473   e-134
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   423   e-119
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   423   e-119
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   420   e-118
gi|239758090 PREDICTED: major histocompatibility complex, class ...   414   e-116
gi|239758095 PREDICTED: similar to major histocompatibility comp...   338   2e-93
gi|239740749 PREDICTED: similar to major histocompatibility comp...   338   2e-93
gi|239748788 PREDICTED: similar to major histocompatibility comp...   337   8e-93
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   336   1e-92
gi|239740863 PREDICTED: similar to major histocompatibility comp...   336   1e-92
gi|239513955 PREDICTED: similar to major histocompatibility comp...   336   1e-92
gi|169168591 PREDICTED: similar to major histocompatibility comp...   328   2e-90
gi|239740918 PREDICTED: similar to major histocompatibility comp...   328   3e-90
gi|239740920 PREDICTED: similar to major histocompatibility comp...   327   9e-90
gi|150418002 major histocompatibility complex, class II, DQ beta...   326   1e-89
gi|24797076 major histocompatibility complex, class II, DP beta ...   313   1e-85
gi|4504403 major histocompatibility complex, class II, DO beta p...   283   1e-76
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   255   2e-68
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   202   2e-52

>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  550 bits (1418), Expect = e-157
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV
Sbjct: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
Sbjct: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  530 bits (1365), Expect = e-151
 Identities = 260/267 (97%), Positives = 261/267 (97%), Gaps = 1/267 (0%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRF-LEYSTSECHFFNGTERVRYLDRY 59
           MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTR +  L   TSECHFFNGTERVRYLDRY
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60

Query: 60  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 119
           FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT
Sbjct: 61  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120

Query: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179
           VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN
Sbjct: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180

Query: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240

Query: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           LFLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  525 bits (1351), Expect = e-149
 Identities = 255/266 (95%), Positives = 257/266 (96%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLE    ECHFFNGTERVR L+RYF
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQ+R  VD YCRHNYGV ESFTV
Sbjct: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
Sbjct: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  503 bits (1294), Expect = e-143
 Identities = 243/266 (91%), Positives = 250/266 (93%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGSCM  LTVTLMVLSSPLAL+GDTRPRFL     ECHFFNGTERVR+LDRYF
Sbjct: 1   MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +NQEE+VRFDSDVGEFRAVTELGRPDAEYWNSQKD+LEQ R  VD YCRHNYGVVESFTV
Sbjct: 61  YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRV PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWF NGQEEK G+VSTGLI NG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  502 bits (1292), Expect = e-142
 Identities = 245/266 (92%), Positives = 251/266 (94%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTRPRFLE   SECHFFNGTERVRYLDRYF
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           HNQEE +RFDSDVGE+RAVTELGRP AE WNSQKDLLEQKRGRVDNYCRHNYGV ESFTV
Sbjct: 61  HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTS LTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  500 bits (1288), Expect = e-142
 Identities = 242/266 (90%), Positives = 251/266 (94%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTRPRFLE   SECHFFNGTERVR+L+R+F
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERHF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           HNQEE  RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQKRG+VDNYCRHNYGV ESFTV
Sbjct: 61  HNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  487 bits (1254), Expect = e-138
 Identities = 237/266 (89%), Positives = 246/266 (92%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL+    ECHFFNGTERVRYL R  
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGI 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +NQEENVRFDSDVGE+RAVTELGRP AE WNSQKD LE++R  VD  CRHNYGV ESFTV
Sbjct: 61  YNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  485 bits (1248), Expect = e-137
 Identities = 238/267 (89%), Positives = 248/267 (92%), Gaps = 1/267 (0%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRF-LEYSTSECHFFNGTERVRYLDRY 59
           MVCL+LPGGS +A LTVTLMVLSS LA AGDTR +  L    SECHFFNGTERVR+L+R+
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60

Query: 60  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 119
           FHNQEE  RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQKRG+VDNYCRHNYGV ESFT
Sbjct: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120

Query: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179
           VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180

Query: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
           GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240

Query: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  485 bits (1248), Expect = e-137
 Identities = 235/266 (88%), Positives = 248/266 (93%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL     +CHFFNGTERV++L+R F
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+LE +RG+VD  CRHNYGV ESFTV
Sbjct: 61  YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  485 bits (1248), Expect = e-137
 Identities = 235/266 (88%), Positives = 248/266 (93%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL     +CHFFNGTERV++L+R F
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+LE +RG+VD  CRHNYGV ESFTV
Sbjct: 61  YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  474 bits (1219), Expect = e-134
 Identities = 229/266 (86%), Positives = 243/266 (91%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGS MA LTVTLMVLSSPLALAGDTRPRFL+    ECHFFNGTERVR+L R  
Sbjct: 1   MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +NQEE++RFDSDVGE+RAVTELGRPDAEYWNSQKD LE +R  VD YCRHNYGV ESFTV
Sbjct: 61  YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRV PKVTVYP++TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEK GVVSTGLI NG
Sbjct: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYF+NQKGHSGL P G +S
Sbjct: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  473 bits (1217), Expect = e-134
 Identities = 228/266 (85%), Positives = 243/266 (91%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+PRFLE +  ECHF NGTERV  L RY 
Sbjct: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +NQEE  R++SD+GE++AVTELGRPDAEYWNSQKDLLE++R  VD YCR+NYGVVESFTV
Sbjct: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+W ARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLL 240

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 241 FLGTGLFIYFRNQKGHSGLQPTGLLS 266


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  423 bits (1088), Expect = e-119
 Identities = 204/232 (87%), Positives = 215/232 (92%)

Query: 35  RFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
           RFL     +CHFFNGTERV++L+R F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92

Query: 95  DLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
           D+LE +RG+VD  CRHNYGV ESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152

Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212

Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  423 bits (1088), Expect = e-119
 Identities = 204/232 (87%), Positives = 215/232 (92%)

Query: 35  RFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
           RFL     +CHFFNGTERV++L+R F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92

Query: 95  DLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
           D+LE +RG+VD  CRHNYGV ESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152

Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212

Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  420 bits (1080), Expect = e-118
 Identities = 214/266 (80%), Positives = 227/266 (85%), Gaps = 13/266 (4%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL     +CHFFNGTERV++L+R F
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +NQEE VRFDSDVGE+RAVTELGRP AE    Q DLL          C  +   +  F +
Sbjct: 61  YNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----------CLPDSFPLPCFLL 110

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
              VHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 111 ---VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 167

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 168 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 227

Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
           FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 228 FLGAGLFIYFRNQKGHSGLQPTGFLS 253


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  414 bits (1063), Expect = e-116
 Identities = 198/232 (85%), Positives = 211/232 (90%)

Query: 35  RFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
           RFLE +  ECHF NGTERV  L RY +NQEE  R++SD+GE++AVTELGRPDAEYWNSQK
Sbjct: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106

Query: 95  DLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
           DLLE++R  VD YCR+NYGVVESFTVQRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPG
Sbjct: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166

Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226

Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  338 bits (868), Expect = 2e-93
 Identities = 167/260 (64%), Positives = 197/260 (75%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PGG   A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + R  +N+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRNGQEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  338 bits (868), Expect = 2e-93
 Identities = 167/260 (64%), Positives = 197/260 (75%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PGG   A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + R  +N+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRNGQEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  337 bits (863), Expect = 8e-93
 Identities = 166/260 (63%), Positives = 197/260 (75%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PGG  +A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + R  +N+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  336 bits (861), Expect = 1e-92
 Identities = 158/177 (89%), Positives = 167/177 (94%)

Query: 35  RFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
           RFLE    ECHFFNGTERVR+LDRYF++QEE VRFDSDVGE+RAVTELGRPDAEYWNSQK
Sbjct: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106

Query: 95  DLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
           DLLEQKR  VD YCRHNYGV ESFTVQRRV+P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166

Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211
           SIEVRWFRNGQEEKTGVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  336 bits (861), Expect = 1e-92
 Identities = 166/260 (63%), Positives = 196/260 (75%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PGG   A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + R  +N+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  336 bits (861), Expect = 1e-92
 Identities = 166/260 (63%), Positives = 196/260 (75%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PGG   A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + R  +N+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  328 bits (842), Expect = 2e-90
 Identities = 160/252 (63%), Positives = 193/252 (76%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PGG  +A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + RY +N+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ R  VD  CRHNY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKG 255
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  328 bits (841), Expect = 3e-90
 Identities = 160/260 (61%), Positives = 195/260 (75%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PGG  +A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + RY +N+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ R  +D  CRHNY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE TGVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GL I+ R+QKG      RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  327 bits (837), Expect = 9e-90
 Identities = 158/252 (62%), Positives = 193/252 (76%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PGG  +A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + RY +N+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE  RFDSDVG +RAVT LG P AEYWNSQK++LE+ R  +D  CRHNY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE TGVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKG 255
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  326 bits (836), Expect = 1e-89
 Identities = 162/252 (64%), Positives = 190/252 (75%)

Query: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63
           LR+PG   +A +T+ L +LSS LA   D+   F+      C+F NGTERVR + RY +N+
Sbjct: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66

Query: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123
           EE  RFDSDVG +RAVT  GRPDAEYWNSQK++LE  R  +D  CRHNY V     +QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           V P VT+ PS+T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246

Query: 244 AGLFIYFRNQKG 255
            GL I  R+QKG
Sbjct: 247 LGLIIRQRSQKG 258


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  313 bits (802), Expect = 1e-85
 Identities = 154/258 (59%), Positives = 188/258 (72%), Gaps = 2/258 (0%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           M+ L++        LT  LMVL + +     T   +L     EC+ FNGT+R  +L+RY 
Sbjct: 1   MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQR--FLERYI 58

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +N+EE  RFDSDVGEFRAVTELGRP AEYWNSQKD+LE+KR   D  CRHNY +    T+
Sbjct: 59  YNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTL 118

Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
           QRRV P+V V PSK  PLQHHNLLVC V+ FYPGSI+VRWF NGQEE  GVVST LI NG
Sbjct: 119 QRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNG 178

Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
           DWTFQ LVMLE  P+ G+VYTCQVEH S+ SP+TVEW+A+S+SA+SK L+G GGFVLGL+
Sbjct: 179 DWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLI 238

Query: 241 FLGAGLFIYFRNQKGHSG 258
             G G+F++ R++K   G
Sbjct: 239 ICGVGIFMHRRSKKVQRG 256


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  283 bits (723), Expect = 1e-76
 Identities = 138/252 (54%), Positives = 178/252 (70%)

Query: 12  MAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDS 71
           +  L V L  L S +    D+   F+  + ++C+F NGTE+V+++ R+  N EE VRFDS
Sbjct: 9   VVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDS 68

Query: 72  DVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVY 131
           DVG F A+T+LG+PDAE WNS+ DLLE+ R  VD  CRHNY +   FTV R+V P+VTVY
Sbjct: 69  DVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVY 128

Query: 132 PSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLE 191
           P +T  L  HNLL CSV+GFYPG I+++WF NGQEE+ GV+STG I NGDWTFQT+VMLE
Sbjct: 129 PERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLE 188

Query: 192 TVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
             P  G VYTC V+H S+ SP++VEWRA+SE +  KMLSG+  F+LGL+FL  G+ I  R
Sbjct: 189 MTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLR 248

Query: 252 NQKGHSGLQPRG 263
            QKG+   Q  G
Sbjct: 249 AQKGYVRTQMSG 260


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  255 bits (652), Expect = 2e-68
 Identities = 122/140 (87%), Positives = 128/140 (91%)

Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
           + PK T+YP+KT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEK  VVS GLI NGDWT
Sbjct: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158

Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218

Query: 244 AGLFIYFRNQKGHSGLQPRG 263
            GLFIYFRNQKGHSGLQP G
Sbjct: 219 TGLFIYFRNQKGHSGLQPTG 238


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  202 bits (514), Expect = 2e-52
 Identities = 96/123 (78%), Positives = 108/123 (87%)

Query: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
           MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+PRFLE +  ECHF NGTERV  L RY 
Sbjct: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60

Query: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
           +NQEE  R++SD+GE++AVTELGRPDAEYWNSQKDLLE++R  VD YCR+NYGVVESFTV
Sbjct: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,717,470
Number of Sequences: 37866
Number of extensions: 467729
Number of successful extensions: 1148
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 183
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.