Search of human proteins with 239740798

Search of human proteins with 239740798

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
         (255 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa...   518   e-147
gi|113430811 PREDICTED: similar to major histocompatibility comp...   516   e-147
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]    515   e-146
gi|169217612 PREDICTED: similar to major histocompatibility comp...   497   e-141
gi|239740747 PREDICTED: similar to major histocompatibility comp...   497   e-141
gi|239740697 PREDICTED: similar to major histocompatibility comp...   497   e-141
gi|239740861 PREDICTED: similar to major histocompatibility comp...   478   e-135
gi|239513953 PREDICTED: similar to major histocompatibility comp...   478   e-135
gi|18426975 major histocompatibility complex, class II, DQ alpha...   466   e-132
gi|11095447 major histocompatibility complex, class II, DQ alpha...   461   e-130
gi|24797074 major histocompatibility complex, class II, DP alpha...   295   3e-80
gi|4504401 major histocompatibility complex, class II, DO alpha ...   292   2e-79
gi|169218140 PREDICTED: similar to major histocompatibility comp...   283   1e-76
gi|52426774 major histocompatibility complex, class II, DR alpha...   276   2e-74
gi|239752547 PREDICTED: similar to major histocompatibility comp...   240   1e-63
gi|18765715 major histocompatibility complex, class II, DM alpha...   101   7e-22
gi|239740859 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239740857 PREDICTED: similar to major histocompatibility comp...    70   2e-12
gi|239758095 PREDICTED: similar to major histocompatibility comp...    69   3e-12
gi|239740749 PREDICTED: similar to major histocompatibility comp...    69   3e-12
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...    69   4e-12
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...    69   4e-12
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...    69   4e-12
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...    69   4e-12
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...    69   4e-12
gi|155030211 major histocompatibility complex, class II, DR beta...    69   5e-12
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...    68   7e-12
gi|18641375 major histocompatibility complex, class II, DR beta ...    68   7e-12
gi|24797076 major histocompatibility complex, class II, DP beta ...    68   9e-12
gi|52630344 major histocompatibility complex, class II, DR beta ...    68   9e-12

>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 255

 Score =  518 bits (1334), Expect = e-147
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|113430811 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 255

 Score =  516 bits (1329), Expect = e-147
 Identities = 254/255 (99%), Positives = 254/255 (99%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PSDDEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
          Length = 255

 Score =  515 bits (1326), Expect = e-146
 Identities = 254/255 (99%), Positives = 254/255 (99%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|169217612 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
          Length = 254

 Score =  497 bits (1279), Expect = e-141
 Identities = 246/255 (96%), Positives = 250/255 (98%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740747 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  497 bits (1279), Expect = e-141
 Identities = 246/255 (96%), Positives = 250/255 (98%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740697 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  497 bits (1279), Expect = e-141
 Identities = 246/255 (96%), Positives = 250/255 (98%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740861 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  478 bits (1231), Expect = e-135
 Identities = 237/255 (92%), Positives = 244/255 (95%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS +E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTV II
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239513953 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  478 bits (1231), Expect = e-135
 Identities = 237/255 (92%), Positives = 244/255 (95%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS +E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTV II
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 RGLRSVGASRHQGPL 255
           RGLRSVGASRHQGPL
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
           precursor [Homo sapiens]
          Length = 255

 Score =  466 bits (1199), Expect = e-132
 Identities = 229/255 (89%), Positives = 239/255 (93%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLERKET W+ P F +F  FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS DEIYDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVGL+GIVVGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240

Query: 241 RGLRSVGASRHQGPL 255
           +GLRSVGASRHQGPL
Sbjct: 241 QGLRSVGASRHQGPL 255


>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
           [Homo sapiens]
          Length = 255

 Score =  461 bits (1186), Expect = e-130
 Identities = 225/255 (88%), Positives = 238/255 (93%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQY+HEFDGDEEFYV
Sbjct: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DLE KETVWQLP+F +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTET+VCALGLSVGL+GIVVGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240

Query: 241 RGLRSVGASRHQGPL 255
           +GLRSVGASRHQG L
Sbjct: 241 QGLRSVGASRHQGLL 255


>gi|24797074 major histocompatibility complex, class II, DP alpha 1
           precursor [Homo sapiens]
          Length = 260

 Score =  295 bits (755), Expect = 3e-80
 Identities = 146/251 (58%), Positives = 186/251 (74%), Gaps = 1/251 (0%)

Query: 5   KALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYVDLER 64
           +A++L AL+L  ++S  G   I ADHV++Y     Q++ P+G++  EFD DE FYVDL++
Sbjct: 11  RAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDEDEMFYVDLDK 69

Query: 65  KETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVT 124
           KETVW L  F +   F+ Q  L NIA+L +NLN +I+RSN T ATN+ PEVTVF K PV 
Sbjct: 70  KETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVE 129

Query: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDD 184
           LGQPNTLIC +D  FPPV+N+TWL NG  VTEGV+E+ FL ++D+SF K  YLTF+PS +
Sbjct: 130 LGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAE 189

Query: 185 EIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLIIRGLR 244
           + YDC+VEHWGLD+PLLKHWE + P  M E TETV+CALGL +GLVGI+VGTVLII+ LR
Sbjct: 190 DFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLR 249

Query: 245 SVGASRHQGPL 255
           S    R QG L
Sbjct: 250 SGHDPRAQGTL 260


>gi|4504401 major histocompatibility complex, class II, DO alpha
           precursor [Homo sapiens]
          Length = 250

 Score =  292 bits (747), Expect = 2e-79
 Identities = 140/242 (57%), Positives = 177/242 (73%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ++HEFD ++ F V
Sbjct: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DL++ E VW+LP F  F RFDPQ  L  IA +K +L+I+++RSN + A N  P VTV  K
Sbjct: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS +++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTVLII
Sbjct: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240

Query: 241 RG 242
            G
Sbjct: 241 MG 242


>gi|169218140 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 153

 Score =  283 bits (724), Expect = 1e-76
 Identities = 138/147 (93%), Positives = 140/147 (95%)

Query: 109 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 168
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66

Query: 169 HSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVG 228
           HSFFKISYLT LPS +E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVG
Sbjct: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126

Query: 229 LVGIVVGTVLIIRGLRSVGASRHQGPL 255
           LVGIVVGTV IIRGLRSVGASRHQGPL
Sbjct: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153


>gi|52426774 major histocompatibility complex, class II, DR alpha
           precursor [Homo sapiens]
          Length = 254

 Score =  276 bits (705), Expect = 2e-74
 Identities = 138/255 (54%), Positives = 173/255 (67%), Gaps = 1/255 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           M ++   +LG   +  +MS      I  +HV       Y +   SG++  +FDGDE F+V
Sbjct: 1   MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQA-EFYLNPDQSGEFMFDFDGDEIFHV 59

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           D+ +KETVW+L  F RF  F+ Q AL NIAV K NL I+ KRSN T  TN  PEVTV + 
Sbjct: 60  DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 119

Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           SPV L +PN LIC +D   PPVVN+TWL NG  VT GVSET FL + DH F K  YL FL
Sbjct: 120 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 179

Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240
           PS +++YDC+VEHWGLDEPLLKHWE + P+P+ E TE VVCALGL+VGLVGI++GT+ II
Sbjct: 180 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 239

Query: 241 RGLRSVGASRHQGPL 255
           +GLR   A+  +GPL
Sbjct: 240 KGLRKSNAAERRGPL 254


>gi|239752547 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 130

 Score =  240 bits (612), Expect = 1e-63
 Identities = 120/131 (91%), Positives = 125/131 (95%), Gaps = 1/131 (0%)

Query: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
           MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
           DL RKETVW LP+ R+F RFDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SPVTLGQPNTL 131
           SPVTLGQPN L
Sbjct: 120 SPVTLGQPNIL 130


>gi|18765715 major histocompatibility complex, class II, DM alpha
           precursor [Homo sapiens]
          Length = 261

 Score =  101 bits (251), Expect = 7e-22
 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 19/211 (9%)

Query: 40  QSYGPSGQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRR---------FDPQFALTNIA 90
           Q   PS   S  +D D+ F+ D  +   V +LP F  + +         FD +F    I 
Sbjct: 51  QDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQ 110

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
            +   L+  I  S         P   VF+  P+  G+PNTL+C V N+FPP++ + W   
Sbjct: 111 QIGPKLDGKIPVSRG------FPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--Q 162

Query: 151 GHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIP 209
            HSV  EG   T   +    SF   SYL F P   +I+ C V H       + +W P   
Sbjct: 163 HHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNA 222

Query: 210 TPMSELTETVVCALGLSVGLVGIVVGTVLII 240
            P S+L E V+C +   +G++GI+VG VLII
Sbjct: 223 LP-SDLLENVLCGVAFGLGVLGIIVGIVLII 252


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 93  KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152
           +HN  +V    + T      P+VTV+      L   N L+C V   +P  + + W  NG 
Sbjct: 110 RHNYGVV---ESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQ 166

Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPM 212
               GV  T  +   D +F  +  L  +P   E+Y C+VEH  +  PL   W     +  
Sbjct: 167 EEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 226

Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQG 253
           S++   V    G  +GL+ +  G  +  R  +     + +G
Sbjct: 227 SKMLSGVG---GFVLGLLFLGAGLFIYFRNQKGHSGLQPRG 264


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 93  KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152
           +HN  +V    + T      P+VTV+      L   N L+C V   +P  + + W  NG 
Sbjct: 109 RHNYGVV---ESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQ 165

Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPM 212
               GV  T  +   D +F  +  L  +P   E+Y C+VEH  +  PL   W     +  
Sbjct: 166 EEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 225

Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQG 253
           S++   V    G  +GL+ +  G  +  R  +     + +G
Sbjct: 226 SKMLSGVG---GFVLGLLFLGAGLFIYFRNQKGHSGLQPRG 263


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  + ++   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G   T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVL 238
             S++   +    G  +GL+ + +G ++
Sbjct: 227 AQSKMLSGIG---GFVLGLIFLGLGLII 251


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  + ++   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G   T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVL 238
             S++   +    G  +GL+ + +G ++
Sbjct: 227 AQSKMLSGIG---GFVLGLIFLGLGLII 251


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P   E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P   E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 105 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 161

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P   E+Y C+VEH  +  PL   W     +
Sbjct: 162 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 221

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 222 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 249


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P   E+Y C+VEH  +  PL   W     +
Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 91  VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +HN  +     + T      PEVTV+      L   N L+C V   +P  + + W  N
Sbjct: 105 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 161

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPT 210
           G     GV  T  +   D +F  +  L  +P   E+Y C+VEH  +  PL   W     +
Sbjct: 162 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 221

Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241
             S++   V    G  +GL+ +  G  +  R
Sbjct: 222 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 249


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score = 68.6 bits (166), Expect = 5e-12
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 93  KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152
           +HN  +V    + T      P+VTV+      L   N L+C V   +P  + + W  NG 
Sbjct: 109 RHNYGVV---ESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQ 165

Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPM 212
               G+  T  +   D +F  +  L  +P   E+Y C+VEH  +  PL   W     +  
Sbjct: 166 EEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 225

Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIR 241
           S++   V    G  +GL+ +  G  +  R
Sbjct: 226 SKMLSGVG---GFVLGLLFLGAGLFIYFR 251


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 113 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 172

Query: 173 KISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGI 232
            +  L  +P   E+Y C+VEH  +  PL   W     +  S++   V    G  +GL+ +
Sbjct: 173 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVG---GFVLGLLFL 229

Query: 233 VVGTVLIIR 241
             G  +  R
Sbjct: 230 GAGLFIYFR 238


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+     TL   N L+C V+  +P  + + W  N      GV  T  +   D +F 
Sbjct: 126 PKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGI 232
            +  L  +P   E+Y C+VEH  +  PL   W  +  +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVLIIRGL 243
           V+G + +  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P V V       L   N L+C V + +P  + + W  NG   T GV  T+ +   D +F 
Sbjct: 124 PRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQ 183

Query: 173 KISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSE-LTETVVCALGLSVGLVG 231
            +  L   P   ++Y C+VEH  LD P+   W+ +  +  S+ LT      LGL +  VG
Sbjct: 184 ILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLIICGVG 243

Query: 232 I 232
           I
Sbjct: 244 I 244


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGI 232
            +  L  +P   E+Y C+VEH  +  PL   W     +  S++   V    G  +GL+ +
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVG---GFVLGLLFL 242

Query: 233 VVGTVLIIR 241
             G  +  R
Sbjct: 243 GTGLFIYFR 251


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,736,969
Number of Sequences: 37866
Number of extensions: 424938
Number of successful extensions: 1134
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 143
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.