Guide to the Human Genome
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Name: SCEL Sequence: fasta or formatted (646aa) NCBI GI: 238908501
Description:

sciellin isoform 3

Referenced in:

LIM Domain Proteins
Skin and Related Tissues

Other entries for this name:
alt prot [668aa] sciellin isoform 2
alt prot [688aa] sciellin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         24           2
 C cysteine            1.4          9           2
 D aspartate           6.3         41           2
 E glutamate           6.3         41           3
 F phenylalanine       1.1          7           1
 G glycine             4.6         30           2
 H histidine           1.5         10           1
 I isoleucine          5.4         35           1
 K lysine              9.1         59           3
 L leucine             7.0         45           1
 M methionine          1.7         11           1
 N asparagine          9.9         64           2
 P proline             5.1         33           2
 Q glutamine           5.4         35           2
 R arginine            6.7         43           2
 S serine              9.1         59           2
 T threonine           7.1         46           2
 V valine              5.7         37           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sciellin isoform 3 
SCEL                  0.980   sciellin isoform 1 
SCEL                  0.940   sciellin isoform 2 
ZNF185                0.035   zinc finger protein 185 
LMO7                  0.026   LIM domain only 7 isoform 1 
LIMCH1                0.024   LIM and calponin homology domains 1 isoform a [Homo...
LIMCH1                0.024   LIM and calponin homology domains 1 isoform e [Homo...
LIMCH1                0.024   LIM and calponin homology domains 1 isoform d [Homo...
LIMCH1                0.024   LIM and calponin homology domains 1 isoform c [Homo...
LIMCH1                0.024   LIM and calponin homology domains 1 isoform b [Homo...
RBBP6                 0.015   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.015   retinoblastoma-binding protein 6 isoform 1 
TMCO5A                0.013   transmembrane and coiled-coil domains 5A 
LOC100292655          0.013   PREDICTED: similar to armadillo repeat containing, ...
PPIG                  0.011   peptidylprolyl isomerase G 
AHCTF1                0.011   transcription factor ELYS 
SYCP2                 0.011   synaptonemal complex protein 2 
BUD13                 0.011   BUD13 homolog isoform 1 
ARID4A                0.011   retinoblastoma-binding protein 1 isoform III 
ARID4A                0.011   retinoblastoma-binding protein 1 isoform II 
ARID4A                0.011   retinoblastoma-binding protein 1 isoform I 
FHL1                  0.010   four and a half LIM domains 1 isoform 4 
FHL1                  0.010   four and a half LIM domains 1 isoform 2 
FHL1                  0.010   four and a half LIM domains 1 isoform 1 
FHL1                  0.010   four and a half LIM domains 1 isoform 2 
FHL1                  0.010   four and a half LIM domains 1 isoform 3 
FHL1                  0.010   four and a half LIM domains 1 isoform 5 
FHL1                  0.010   four and a half LIM domains 1 isoform 2 
ERBB2IP               0.010   ERBB2 interacting protein isoform 7 
ERBB2IP               0.010   ERBB2 interacting protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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