Guide to the Human Genome
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Name: RBBP6 Sequence: fasta or formatted (1792aa) NCBI GI: 33620769
Description:

retinoblastoma-binding protein 6 isoform 1

Referenced in:

RB1 and Related Functions

Other entries for this name:
alt prot [118aa] retinoblastoma-binding protein 6 isoform 3
alt prot [1758aa] retinoblastoma-binding protein 6 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         79           3
 C cysteine            0.9         16           2
 D aspartate           5.4         97           2
 E glutamate           8.5        153           3
 F phenylalanine       1.9         34           1
 G glycine             4.7         84           3
 H histidine           2.3         42           2
 I isoleucine          3.8         68           2
 K lysine             12.6        226           7
 L leucine             4.4         79           2
 M methionine          1.2         22           2
 N asparagine          4.5         81           2
 P proline             8.8        158           6
 Q glutamine           3.1         56           2
 R arginine            7.0        125           3
 S serine             12.9        232           5
 T threonine           5.9        106           2
 V valine              4.2         76           2
 W tryptophan          0.3          5           1
 Y tyrosine            3.0         53           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoblastoma-binding protein 6 isoform 1 
RBBP6                 0.977   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.050   retinoblastoma-binding protein 6 isoform 3 
SRRM2                 0.028   splicing coactivator subunit SRm300 
DSPP                  0.026   dentin sialophosphoprotein preproprotein 
NEFH                  0.026   neurofilament, heavy polypeptide 200kDa 
ZC3H13                0.024   zinc finger CCCH-type containing 13 
ATRX                  0.023   transcriptional regulator ATRX isoform 2 
ATRX                  0.023   transcriptional regulator ATRX isoform 1 
SRRM1                 0.022   serine/arginine repetitive matrix 1 
BOD1L                 0.022   biorientation of chromosomes in cell division 1-like...
MAP1B                 0.022   microtubule-associated protein 1B 
NKTR                  0.021   natural killer-tumor recognition sequence 
ANKRD12               0.021   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.021   ankyrin repeat domain 12 isoform 1 
ANKRD11               0.020   ankyrin repeat domain 11 
PPIG                  0.020   peptidylprolyl isomerase G 
THRAP3                0.020   thyroid hormone receptor associated protein 3 [Homo...
CYLC1                 0.020   cylicin, basic protein of sperm head cytoskeleton 1...
AFF4                  0.020   ALL1 fused gene from 5q31 
PCLO                  0.019   piccolo isoform 2 
PCLO                  0.019   piccolo isoform 1 
EIF5B                 0.018   eukaryotic translation initiation factor 5B 
TCHH                  0.017   trichohyalin 
TCOF1                 0.016   Treacher Collins-Franceschetti syndrome 1 isoform a ...
LOC731605             0.016   PREDICTED: similar to BCL2-associated transcription...
ARID4B                0.016   AT rich interactive domain 4B isoform 2 
RSF1                  0.016   remodeling and spacing factor 1 
SFRS12                0.016   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.016   splicing factor, arginine/serine-rich 12 isoform b [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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