Guide to the Human Genome
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Name: BUD13 Sequence: fasta or formatted (619aa) NCBI GI: 14249338
Description:

BUD13 homolog isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {485aa} BUD13 homolog isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         41           3
 C cysteine            0.2          1           1
 D aspartate           9.5         59           3
 E glutamate           6.3         39           4
 F phenylalanine       1.9         12           1
 G glycine             5.3         33           2
 H histidine           3.4         21           1
 I isoleucine          1.5          9           1
 K lysine              8.2         51           2
 L leucine             5.2         32           2
 M methionine          1.6         10           1
 N asparagine          2.7         17           2
 P proline            10.0         62           3
 Q glutamine           4.4         27           4
 R arginine           12.3         76           3
 S serine             11.5         71           2
 T threonine           3.4         21           2
 V valine              2.9         18           2
 W tryptophan          1.1          7           1
 Y tyrosine            1.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BUD13 homolog isoform 1 
BUD13                 0.472   BUD13 homolog isoform 2 
SRRM2                 0.041   splicing coactivator subunit SRm300 
SRRM1                 0.041   serine/arginine repetitive matrix 1 
ZC3H13                0.039   zinc finger CCCH-type containing 13 
TRIOBP                0.034   TRIO and F-actin binding protein isoform 6 
C2orf16               0.034   hypothetical protein LOC84226 
LOC100170229          0.032   hypothetical protein LOC100170229 
IWS1                  0.031   IWS1 homolog 
FLJ37078              0.030   hypothetical protein LOC222183 
DSPP                  0.027   dentin sialophosphoprotein preproprotein 
CHD7                  0.026   chromodomain helicase DNA binding protein 7 
NEFH                  0.025   neurofilament, heavy polypeptide 200kDa 
GPATCH8               0.025   G patch domain containing 8 
ZC3H18                0.025   zinc finger CCCH-type containing 18 
ANK2                  0.024   ankyrin 2 isoform 1 
ZRANB2                0.024   zinc finger protein 265 isoform 1 
MAP7D1                0.023   MAP7 domain containing 1 
EIF3A                 0.023   eukaryotic translation initiation factor 3, subunit 1...
LOC100286959          0.022   PREDICTED: hypothetical protein XP_002343921 
KIAA1853              0.022   KIAA1853 protein 
NACA                  0.022   nascent polypeptide-associated complex alpha subuni...
TAF3                  0.022   RNA polymerase II transcription factor TAFII140 [Ho...
SFRS18                0.022   splicing factor, arginine/serine-rich 130 
SFRS18                0.022   splicing factor, arginine/serine-rich 130 
NKAP                  0.021   NFKB activating protein 
ZRANB2                0.021   zinc finger protein 265 isoform 2 
RBM25                 0.020   RNA binding motif protein 25 
ACRC                  0.020   ACRC protein 
SFRS12                0.020   splicing factor, arginine/serine-rich 12 isoform a ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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