Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FHL1 Sequence: fasta or formatted (309aa) NCBI GI: 228480209
Description:

four and a half LIM domains 1 isoform 3

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [280aa] four and a half LIM domains 1 isoform 2
alt prot [296aa] four and a half LIM domains 1 isoform 5
alt prot [280aa] four and a half LIM domains 1 isoform 2
alt prot [323aa] four and a half LIM domains 1 isoform 1
alt prot [280aa] four and a half LIM domains 1 isoform 2
alt prot [194aa] four and a half LIM domains 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         21           1
 C cysteine           11.0         34           2
 D aspartate           5.5         17           1
 E glutamate           3.9         12           1
 F phenylalanine       6.5         20           2
 G glycine             6.1         19           2
 H histidine           4.2         13           2
 I isoleucine          2.6          8           1
 K lysine             12.0         37           2
 L leucine             3.9         12           1
 M methionine          1.0          3           1
 N asparagine          3.9         12           1
 P proline             3.2         10           1
 Q glutamine           3.6         11           1
 R arginine            2.3          7           1
 S serine              4.9         15           2
 T threonine           5.5         17           2
 V valine              7.1         22           2
 W tryptophan          1.6          5           1
 Y tyrosine            4.5         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   four and a half LIM domains 1 isoform 3 
FHL1                  0.943   four and a half LIM domains 1 isoform 5 
FHL1                  0.915   four and a half LIM domains 1 isoform 2 
FHL1                  0.915   four and a half LIM domains 1 isoform 2 
FHL1                  0.915   four and a half LIM domains 1 isoform 2 
FHL1                  0.749   four and a half LIM domains 1 isoform 1 
FHL1                  0.542   four and a half LIM domains 1 isoform 4 
FHL2                  0.464   four and a half LIM domains 2 
FHL2                  0.464   four and a half LIM domains 2 
FHL2                  0.464   four and a half LIM domains 2 
FHL2                  0.464   four and a half LIM domains 2 
FHL3                  0.407   four and a half LIM domains 3 
FHL5                  0.397   activator of cAMP-responsive element modulator (CREM...
PXN                   0.142   paxillin isoform 3 
PXN                   0.142   paxillin isoform 2 
PXN                   0.142   paxillin isoform 1 
LIMS1                 0.142   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.141   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.141   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.141   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.141   LIM and senescent cell antigen-like domains 2 isofor...
LPXN                  0.138   leupaxin isoform 1 
LPXN                  0.138   leupaxin isoform 2 
LDB3                  0.130   LIM domain binding 3 isoform 2 
LDB3                  0.130   LIM domain binding 3 isoform 1 
PDLIM7                0.126   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.126   PDZ and LIM domain 7 isoform 1 
TGFB1I1               0.120   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.120   transforming growth factor beta 1 induced transcript...
PDLIM5                0.118   PDZ and LIM domain 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press