Guide to the Human Genome
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Name: FHL1 Sequence: fasta or formatted (280aa) NCBI GI: 21361122
Description:

four and a half LIM domains 1 isoform 2

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [296aa] four and a half LIM domains 1 isoform 5
alt mRNA [280aa] four and a half LIM domains 1 isoform 2
alt prot [309aa] four and a half LIM domains 1 isoform 3
alt prot [323aa] four and a half LIM domains 1 isoform 1
alt mRNA [280aa] four and a half LIM domains 1 isoform 2
alt prot [194aa] four and a half LIM domains 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         18           1
 C cysteine           12.1         34           2
 D aspartate           6.1         17           1
 E glutamate           3.9         11           1
 F phenylalanine       6.8         19           2
 G glycine             6.1         17           2
 H histidine           4.6         13           2
 I isoleucine          2.5          7           1
 K lysine             12.9         36           2
 L leucine             2.9          8           1
 M methionine          0.4          1           1
 N asparagine          4.3         12           1
 P proline             2.9          8           1
 Q glutamine           3.9         11           1
 R arginine            2.5          7           1
 S serine              3.6         10           2
 T threonine           5.4         15           2
 V valine              7.1         20           2
 W tryptophan          1.4          4           1
 Y tyrosine            4.3         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   four and a half LIM domains 1 isoform 2 
FHL1                  1.000   four and a half LIM domains 1 isoform 2 
FHL1                  1.000   four and a half LIM domains 1 isoform 2 
FHL1                  1.000   four and a half LIM domains 1 isoform 3 
FHL1                  1.000   four and a half LIM domains 1 isoform 5 
FHL1                  0.818   four and a half LIM domains 1 isoform 1 
FHL1                  0.592   four and a half LIM domains 1 isoform 4 
FHL2                  0.507   four and a half LIM domains 2 
FHL2                  0.507   four and a half LIM domains 2 
FHL2                  0.507   four and a half LIM domains 2 
FHL2                  0.507   four and a half LIM domains 2 
FHL3                  0.445   four and a half LIM domains 3 
FHL5                  0.434   activator of cAMP-responsive element modulator (CREM...
PXN                   0.155   paxillin isoform 3 
PXN                   0.155   paxillin isoform 2 
PXN                   0.155   paxillin isoform 1 
LIMS1                 0.155   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.154   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.154   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.154   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.154   LIM and senescent cell antigen-like domains 2 isofor...
LPXN                  0.151   leupaxin isoform 1 
LPXN                  0.151   leupaxin isoform 2 
LDB3                  0.142   LIM domain binding 3 isoform 2 
LDB3                  0.142   LIM domain binding 3 isoform 1 
PDLIM7                0.137   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.137   PDZ and LIM domain 7 isoform 1 
TGFB1I1               0.131   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.131   transforming growth factor beta 1 induced transcript...
PDLIM5                0.129   PDZ and LIM domain 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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