TMCO5A 26354

Name: TMCO5A	Sequence: fasta or formatted (288aa)		NCBI GI: 34303932
Description: transmembrane and coiled-coil domains 5A		Referenced in: Coiled-Coil Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.8 11 1 C cysteine 2.1 6 2 D aspartate 3.1 9 1 E glutamate 13.9 40 3 F phenylalanine 4.9 14 3 G glycine 1.4 4 1 H histidine 1.4 4 1 I isoleucine 5.6 16 2 K lysine 9.0 26 2 L leucine 13.9 40 3 M methionine 2.4 7 1 N asparagine 3.8 11 2 P proline 2.4 7 1 Q glutamine 6.6 19 2 R arginine 6.6 19 1 S serine 5.6 16 2 T threonine 6.9 20 2 V valine 4.2 12 1 W tryptophan 0.7 2 1 Y tyrosine 1.7 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 transmembrane and coiled-coil domains 5A CUX1 0.059 cut-like homeobox 1 isoform c CCDC88A 0.059 coiled-coil domain containing 88A isoform 2 CCDC88A 0.059 coiled-coil domain containing 88A isoform 1 CUX1 0.056 cut-like homeobox 1 isoform a CUX1 0.056 cut-like homeobox 1 isoform b MYH11 0.056 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.056 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.056 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.056 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... MYH2 0.056 myosin, heavy chain 2, skeletal muscle, adult [Homo... MYH2 0.056 myosin, heavy chain 2, skeletal muscle, adult [Homo... LOC400352 0.056 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.056 PREDICTED: similar to Putative golgin subfamily A m... MYH1 0.052 myosin, heavy chain 1, skeletal muscle, adult [Homo... LOC645202 0.050 PREDICTED: hypothetical protein LOC645202 PDE4DIP 0.050 phosphodiesterase 4D interacting protein isoform 2 [... PDE4DIP 0.050 phosphodiesterase 4D interacting protein isoform 1 ... EEA1 0.050 early endosome antigen 1, 162kD MYH7 0.050 myosin, heavy chain 7, cardiac muscle, beta CEP250 0.050 centrosomal protein 2 MYH6 0.048 myosin heavy chain 6 CCDC88C 0.048 DVL-binding protein DAPLE LOC283767 0.046 golgi autoantigen, golgin subfamily a-like LOC283685 0.046 PREDICTED: golgi autoantigen, golgin subfamily a-li... MYH4 0.046 myosin, heavy polypeptide 4, skeletal muscle LOC440243 0.046 PREDICTED: Putative golgin subfamily A member 6-lik... KIAA1598 0.046 shootin1 isoform a KIAA1598 0.046 shootin1 isoform b LOC727832 0.046 golgi autoantigen, golgin subfamily a-like Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.