Guide to the Human Genome
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Name: ZNF185 Sequence: fasta or formatted (689aa) NCBI GI: 148298722
Description:

zinc finger protein 185

Referenced in:

LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         61           2
 C cysteine            2.3         16           2
 D aspartate           4.8         33           1
 E glutamate           8.3         57           7
 F phenylalanine       1.9         13           1
 G glycine             8.4         58           2
 H histidine           0.9          6           1
 I isoleucine          3.6         25           2
 K lysine              5.5         38           2
 L leucine             4.4         30           2
 M methionine          1.2          8           1
 N asparagine          2.0         14           2
 P proline             9.0         62           2
 Q glutamine           4.4         30           3
 R arginine            7.4         51           2
 S serine             12.8         88           3
 T threonine           6.5         45           2
 V valine              5.4         37           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 185 
SCEL                  0.033   sciellin isoform 3 
SCEL                  0.033   sciellin isoform 1 
SCEL                  0.033   sciellin isoform 2 
RP1L1                 0.022   retinitis pigmentosa 1-like 1 
LMO7                  0.019   LIM domain only 7 isoform 1 
BASP1                 0.019   brain abundant, membrane attached signal protein 1 [...
MUC4                  0.018   mucin 4 isoform a 
SMTNL1                0.018   smoothelin-like 1 
NOLC1                 0.018   nucleolar and coiled-body phosphoprotein 1 
TNRC18                0.018   trinucleotide repeat containing 18 
TCOF1                 0.017   Treacher Collins-Franceschetti syndrome 1 isoform a ...
SRRM2                 0.017   splicing coactivator subunit SRm300 
FNDC1                 0.016   fibronectin type III domain containing 1 
SNAP91                0.016   synaptosomal-associated protein, 91kDa homolog 
TCOF1                 0.016   Treacher Collins-Franceschetti syndrome 1 isoform e...
MAPT                  0.015   microtubule-associated protein tau isoform 1 
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform c ...
PCLO                  0.015   piccolo isoform 2 
PCLO                  0.015   piccolo isoform 1 
MAPT                  0.015   microtubule-associated protein tau isoform 6 
LIMCH1                0.014   LIM and calponin homology domains 1 isoform a [Homo...
NKX1-1                0.014   PREDICTED: HPX-153 homeobox 
SCAF1                 0.014   SR-related CTD-associated factor 1 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
RCSD1                 0.014   RCSD domain containing 1 
EHBP1L1               0.014   tangerin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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