Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AHCTF1 Sequence: fasta or formatted (2266aa) NCBI GI: 67551265
Description:

transcription factor ELYS

Referenced in:

Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4        122           2
 C cysteine            1.5         33           2
 D aspartate           4.6        105           2
 E glutamate           8.2        185           2
 F phenylalanine       2.9         66           2
 G glycine             4.7        107           2
 H histidine           1.8         40           2
 I isoleucine          4.5        103           2
 K lysine              6.6        149           3
 L leucine            10.5        239           3
 M methionine          1.5         33           1
 N asparagine          4.2         95           2
 P proline             5.8        131           3
 Q glutamine           5.1        115           2
 R arginine            5.4        122           3
 S serine             10.9        246           3
 T threonine           6.3        142           2
 V valine              7.3        166           2
 W tryptophan          0.9         21           1
 Y tyrosine            2.0         46           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor ELYS 
ATRX                  0.008   transcriptional regulator ATRX isoform 2 
ATRX                  0.008   transcriptional regulator ATRX isoform 1 
NEFH                  0.008   neurofilament, heavy polypeptide 200kDa 
BOD1L                 0.008   biorientation of chromosomes in cell division 1-like...
LOC100133923          0.008   PREDICTED: similar to UPF0634 protein C 
PRPF38B               0.007   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
CYLC1                 0.007   cylicin, basic protein of sperm head cytoskeleton 1...
NOLC1                 0.006   nucleolar and coiled-body phosphoprotein 1 
MAP1B                 0.006   microtubule-associated protein 1B 
EIF5B                 0.006   eukaryotic translation initiation factor 5B 
SRRM1                 0.006   serine/arginine repetitive matrix 1 
PPIG                  0.006   peptidylprolyl isomerase G 
CHD2                  0.006   chromodomain helicase DNA binding protein 2 isoform...
ARID4B                0.006   AT rich interactive domain 4B isoform 2 
CHD2                  0.006   chromodomain helicase DNA binding protein 2 isoform...
LOC400986             0.006   PREDICTED: protein immuno-reactive with anti-PTH po...
MAP4                  0.006   microtubule-associated protein 4 isoform 5 
MAP4                  0.006   microtubule-associated protein 4 isoform 2 
TRDN                  0.006   triadin 
SFRS2IP               0.005   splicing factor, arginine/serine-rich 2, interactin...
NEFM                  0.005   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.005   neurofilament, medium polypeptide 150kDa isoform 2 ...
CENPE                 0.005   centromere protein E 
PLEC1                 0.005   plectin 1 isoform 11 
PLEC1                 0.005   plectin 1 isoform 10 
PLEC1                 0.005   plectin 1 isoform 8 
PLEC1                 0.005   plectin 1 isoform 7 
PLEC1                 0.005   plectin 1 isoform 6 
PLEC1                 0.005   plectin 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press