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Search of human proteins with 23510333
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23510333 pygopus homolog 2 [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23510333 pygopus homolog 2 [Homo sapiens] 877 0.0
gi|30911103 pygopus homolog 1 [Homo sapiens] 240 1e-63
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 102 6e-22
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 93 4e-19
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 90 3e-18
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 88 2e-17
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 88 2e-17
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 88 2e-17
gi|163965366 nascent polypeptide-associated complex alpha subuni... 87 4e-17
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 86 5e-17
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 86 8e-17
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 86 8e-17
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 86 8e-17
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 85 1e-16
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 85 1e-16
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 85 1e-16
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 84 2e-16
gi|160707881 formin 2 [Homo sapiens] 84 3e-16
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 82 7e-16
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 82 7e-16
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 82 7e-16
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 82 7e-16
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 82 7e-16
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 82 1e-15
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 81 1e-15
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 81 1e-15
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 79 1e-14
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 78 1e-14
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 78 1e-14
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 78 1e-14
>gi|23510333 pygopus homolog 2 [Homo sapiens]
Length = 406
Score = 877 bits (2267), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTE 60
MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTE
Sbjct: 1 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTE 60
Query: 61 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST 120
FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST
Sbjct: 61 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST 120
Query: 121 GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG
Sbjct: 121 GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN
Sbjct: 181 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
Query: 241 TSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGG 300
TSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGG
Sbjct: 241 TSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGG 300
Query: 301 GTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 360
GTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTG
Sbjct: 301 GTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 360
Query: 361 MTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG 406
MTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG
Sbjct: 361 MTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG 406
>gi|30911103 pygopus homolog 1 [Homo sapiens]
Length = 419
Score = 240 bits (613), Expect = 1e-63
Identities = 161/439 (36%), Positives = 214/439 (48%), Gaps = 58/439 (13%)
Query: 2 AASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEF 61
A ++P P K+ GG + G G+Q+ SP+KK+RK+NTQGP++ L+E+
Sbjct: 3 AENSPAPAYKVSSHGGDSGLDG-------LGGPGVQLGSPDKKKRKANTQGPSFPPLSEY 55
Query: 62 APPPTPMVDHLVASNPFEDDFG--APKVGVAAPPFLGSPVP-FGGFRVQGGMAGQVPPGY 118
APPP P DHLVA+NPF+D++ + K ++ P+LG P FGG+ M VPP
Sbjct: 56 APPPNPNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFR-MPPHVPPRM 114
Query: 119 STGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPP 178
S+ G P LR QP PFP NP+G FN P + P N +F + +N L QN + P
Sbjct: 115 SSPYCG-PYSLRNQPHPFPQNPLGMGFNRP-HAFNFGPHDNSSFGNPSYNNALSQNVNMP 172
Query: 179 SGQMMPGPVGGFGPMISPTMGQPPR--AELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPS 236
+ P F + PP+ +++ P L+ F SPL+ +P
Sbjct: 173 NQHFRQNPAENFSQI-------PPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIP- 224
Query: 237 LPPNT-----SPFPGPDPGFPGPGGEDGGKPLNPP-------------------ASTAFP 272
PPNT +P P D + +PP + A
Sbjct: 225 -PPNTFGQAKAPPPKQDFTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNAVN 283
Query: 273 QEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG------GGSGPQPPPGL 326
QE S A N N + N + G DA + K+ G S P
Sbjct: 284 QENSRSSSTEATNNNPANGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDP---- 339
Query: 327 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 386
VYPCG C +EVNDDQDAILCEASCQKWFHR CTGMTE+AYGLLT EASAVW CD C+ K
Sbjct: 340 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADK 399
Query: 387 EIQSVYIREGMGQLVAAND 405
++Q + RE G +D
Sbjct: 400 DVQLMRTRETFGPSAVGSD 418
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 102 bits (254), Expect = 6e-22
Identities = 109/344 (31%), Positives = 126/344 (36%), Gaps = 56/344 (16%)
Query: 5 APPPPDKLEGGGGPAPPPAPPSTGRKQG---KAGLQMKSPEKKRRKSNTQGPAYSHLTEF 61
APP +GG P PP+PP G+ QG + G Q + P K P + +
Sbjct: 39 APP-----QGGNKPQGPPSPP--GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 91
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
PPP P D +P+ P P P GG + QG PPG G
Sbjct: 92 PPPPGKPQ----GPPPQGDKSRSPRSPPGKPQ---GPPPQGGNQPQGPPP---PPGKPQG 141
Query: 122 GG--GGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP-----PPGN-MNFPSQPFNQPLGQ 173
GG +P Q PP P P GP PPQG PPG P Q NQP G
Sbjct: 142 PPPQGGNKP---QGPPPPGKPQGP----PPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGP 194
Query: 174 NFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ-----PGAPFGPSPLQ 228
PP P P GG P P G+P GPP +Q PG P GP P
Sbjct: 195 P-PPPGKPQGPPPQGGNKPQGPPPPGKPQ----GPPPQGDNKSQSARSPPGKPQGPPPQG 249
Query: 229 RPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPP--------ASTAFPQEPHSGSP 280
P PP P P G G GKP PP +S + P +P P
Sbjct: 250 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPP 309
Query: 281 AAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPP 324
GNQP PP G+ G P P G G PPP
Sbjct: 310 QG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 350
Score = 101 bits (252), Expect = 1e-21
Identities = 115/353 (32%), Positives = 128/353 (36%), Gaps = 63/353 (17%)
Query: 6 PPPPDKLEGGG--GPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAP 63
PPPP K +G G P PP G+ QG KS + QGP +
Sbjct: 72 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQG 131
Query: 64 PPTPMVDHLVASNPFEDDFGAPKVG--VAAPPFLGSPVPFGGFRVQG---GMAGQVPPGY 118
PP P P + P+ G PP G P G QG + + PPG
Sbjct: 132 PPPP---------PGKPQGPPPQGGNKPQGPPPPGKPQ---GPPPQGDNKSRSSRSPPGK 179
Query: 119 STGGG--GGPQPLRRQPPPFPPNPMGPAFNMPPQG----PGYPPPGNMNFPSQPFNQPLG 172
G GG QP + PPP P P GP PPQG G PPPG P +
Sbjct: 180 PQGPPPQGGNQP--QGPPPPPGKPQGP----PPQGGNKPQGPPPPGKPQGPPPQGDNKSQ 233
Query: 173 QNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ----PGAPFGPSPL- 227
SPP P P GG P P PP GPP Q PG P GP P
Sbjct: 234 SARSPPGKPQGPPPQGGNQPQGPPP---PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 290
Query: 228 ------QRPGQGLPSLPP----NTSPFPGPDPGFP-GPGGEDGGKPLNPPASTAFPQEPH 276
R G P PP N P P PG P GP + G KP PP PQ P
Sbjct: 291 GSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK-PQGPP 349
Query: 277 ----SGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGG-SGPQPPP 324
S S +A +P PP G N PP AGG PQ PP
Sbjct: 350 PQGGSKSRSARSPPGKPQGPPQQEGN-------NPQGPPPPAGGNPQQPQAPP 395
Score = 80.9 bits (198), Expect = 2e-15
Identities = 97/324 (29%), Positives = 111/324 (34%), Gaps = 98/324 (30%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPT 66
PPP +GG P PP PP G+ QG P QGP PPP
Sbjct: 183 PPP---QGGNQPQGPPPPP--GKPQGPPPQGGNKP---------QGP---------PPP- 218
Query: 67 PMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTG--GGG 124
G P+ P P G + Q + + PPG G G
Sbjct: 219 ----------------GKPQ----------GPPPQGDNKSQ---SARSPPGKPQGPPPQG 249
Query: 125 GPQPLRRQPPPFPPNPMGPAFNMPPQG----PGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
G QP + PPP P P GP PPQG G PPPG P + SPP
Sbjct: 250 GNQP--QGPPPPPGKPQGP----PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGK 303
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
P P GG P P PP GPP P GP P +P QG P +
Sbjct: 304 PQGPPPQGGNQPQGPP---PPPGKPQGPPPQG-----GNKPQGPPPPGKP-QGPPPQGGS 354
Query: 241 TSPFPGPDPGFP-GPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRG 299
S PG P GP ++G P PP P A N QP PP +G
Sbjct: 355 KSRSARSPPGKPQGPPQQEGNNPQGPP-------------PPAGGNPQQPQAPPAGQPQG 401
Query: 300 GGTPDANSLAPPGKAGGGSGPQPP 323
PP GG +PP
Sbjct: 402 ----------PPRPPQGGRPSRPP 415
Score = 78.6 bits (192), Expect = 1e-14
Identities = 73/222 (32%), Positives = 80/222 (36%), Gaps = 37/222 (16%)
Query: 116 PGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNF 175
P G G P P PP+P G PQGP PP G NQP G
Sbjct: 29 PSLIAGNPQGAPPQGGNKPQGPPSPPG-----KPQGP--PPQGG--------NQPQGPP- 72
Query: 176 SPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPP-----SLSQRFAQPGAPFGPSPLQRP 230
PP P P GG P P G+P GPP S S R + PG P GP P
Sbjct: 73 PPPGKPQGPPPQGGNKPQGPPPPGKPQ----GPPPQGDKSRSPR-SPPGKPQGPPPQGGN 127
Query: 231 GQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPP--------ASTAFPQEPHSGSPAA 282
P PP P P G G GKP PP +S + P +P P
Sbjct: 128 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQ- 186
Query: 283 AVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPP 324
GNQP PP G+ G P P G G PPP
Sbjct: 187 --GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 226
Score = 47.0 bits (110), Expect = 3e-05
Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 224 PSPLQRPGQGLPSLPPNTSPFPGPDPGFP-GPGGEDGGKPLNPPASTAFPQEPHSGSPAA 282
PS + QG P N P PG P GP + G +P PP PQ P
Sbjct: 29 PSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP------P 82
Query: 283 AVNGNQPSFPPNSSGRGGGTPDANS----LAPPGKAGG--------GSGPQPPPG 325
GN+P PP G P + +PPGK G GP PPPG
Sbjct: 83 PQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 137
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 93.2 bits (230), Expect = 4e-19
Identities = 107/343 (31%), Positives = 120/343 (34%), Gaps = 68/343 (19%)
Query: 1 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTE 60
+ A P P +GG P PP PP G+ QG P+ QGP
Sbjct: 31 LIAGNPQGPSP-QGGNKPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGP------- 80
Query: 61 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST 120
PP S P G P+ P P GG + QG PPG
Sbjct: 81 ---PPQGDKSRSPRSPP-----GKPQ----------GPPPQGGNQPQGPPP---PPGKPQ 119
Query: 121 GGG--GGPQPLRRQPPPFPPNPMGPAFNMPPQG-----PGYPPPGNMNFPSQPFNQPLGQ 173
G GG +P Q PP P P GP PPQG P PP P Q NQP G
Sbjct: 120 GPPPQGGNRP---QGPPPPGKPQGP----PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP 172
Query: 174 NFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRF----AQPGAPFGPSPLQR 229
PP P P GG P P G+P GPP + + PG P GP P
Sbjct: 173 P-PPPGKPQGPPPQGGKKPQGPPPPGKPQ----GPPPQGDKSRSSQSPPGKPQGPPPQGG 227
Query: 230 PGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPA-------STAFPQEPHSGSPAA 282
P PP P P G G GKP PPA S P G P
Sbjct: 228 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ 287
Query: 283 AVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPG 325
GN P PP + GG P P G+ G P+PP G
Sbjct: 288 --EGNNPQGPPPPA---GGNPQQPQAPPAGQPQG--PPRPPQG 323
Score = 86.7 bits (213), Expect = 4e-17
Identities = 81/236 (34%), Positives = 87/236 (36%), Gaps = 32/236 (13%)
Query: 116 PGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQG----PGYPPPGNMNFPSQPFNQPL 171
P G GP P P PP P G PPQG G PPPG P P
Sbjct: 29 PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP-PPQGDKS 87
Query: 172 GQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ----PGAPFGP--- 224
SPP P P GG P P PP GPP Q PG P GP
Sbjct: 88 RSPRSPPGKPQGPPPQGGNQPQGPP---PPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQ 144
Query: 225 -----SPLQRPG--QGLPSLPPNTSPFPGPDPGFP-GPGGEDGGKPLNPPASTAFPQEPH 276
SP PG QG P N P P PG P GP + G KP PP PQ P
Sbjct: 145 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPP-PPGKPQGPP 203
Query: 277 SGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGK-----AGGGSGPQ--PPPG 325
+ + + P P +GG P PPGK GG+ PQ PPPG
Sbjct: 204 PQGDKSRSSQSPPGKPQGPPPQGGNQPQGPP-PPPGKPQGPPPQGGNKPQGPPPPG 258
Score = 62.4 bits (150), Expect = 7e-10
Identities = 76/251 (30%), Positives = 88/251 (35%), Gaps = 49/251 (19%)
Query: 6 PPPPDKLEGGG--GPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAP 63
PPPP K +G G P PP G+ QG KS + QGP +
Sbjct: 112 PPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQG 171
Query: 64 PPTPMVDHLVASNPFEDDFGAPKVGVA--APPFLGSPVPFGGFRVQG--GMAGQVPPGYS 119
PP P P + P+ G PP G P G QG + Q PPG
Sbjct: 172 PPPP---------PGKPQGPPPQGGKKPQGPPPPGKPQ---GPPPQGDKSRSSQSPPGKP 219
Query: 120 TGGG--GGPQPLRRQPPPFPPNPMGPA-------FNMPPQGPGYPPPGNMNFPSQPFNQP 170
G GG QP + PPP P P GP PP G PP SQ P
Sbjct: 220 QGPPPQGGNQP--QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSP 277
Query: 171 LGQNFSPP--SGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQ 228
G+ PP G GP P G P+ PP+ G P GP +
Sbjct: 278 PGKPQGPPQQEGNNPQGP--------PPPAGGNPQQPQAPPA--------GQPQGPP--R 319
Query: 229 RPGQGLPSLPP 239
P G PS PP
Sbjct: 320 PPQGGRPSRPP 330
Score = 58.2 bits (139), Expect = 1e-08
Identities = 59/185 (31%), Positives = 68/185 (36%), Gaps = 46/185 (24%)
Query: 164 SQPFNQPLGQNFSP------PSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ 217
+Q N+ + Q SP P G P P GG P P PP GPP Q
Sbjct: 16 AQNLNEDVSQEESPSLIAGNPQG---PSPQGGNKPQGPPP---PPGKPQGPPPQGGNKPQ 69
Query: 218 ----PGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFP-GPGGEDGGKPLNPPASTAFP 272
PG P GP P QG S P + P G P GP + G +P PP P
Sbjct: 70 GPPPPGKPQGPPP-----QGDKSRSPRSPP------GKPQGPPPQGGNQPQGPPPPPGKP 118
Query: 273 QEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANS----LAPPGKAGG--------GSGP 320
Q P GN+P PP G P + +PPGK G GP
Sbjct: 119 QGP------PPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP 172
Query: 321 QPPPG 325
PPPG
Sbjct: 173 PPPPG 177
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 90.1 bits (222), Expect = 3e-18
Identities = 93/283 (32%), Positives = 109/283 (38%), Gaps = 63/283 (22%)
Query: 102 GGFRVQGGMAGQ--------VPPGYSTG---GGGGPQPLRRQP-PPFPPNPMGPAFNMPP 149
GGF +GG G+ PPG G GP P + P PP PP P PP
Sbjct: 14 GGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPP 73
Query: 150 ---QGPGYPPPGNMNFPSQPFNQ----PLGQNFSPPSGQMMPGPVGGFG----------P 192
P PPP QP Q P Q+ S P PGP G G P
Sbjct: 74 PQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPP 133
Query: 193 MISPTMGQPPRAELGP---PSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNT-------S 242
PT G PP + GP P + A PGAP P+P P G+P+ PP +
Sbjct: 134 ATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAP-PPTP---PSSGVPTTPPQAGGPPPPPA 189
Query: 243 PFPGPDPG---FPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRG 299
PGP PG PGPGG GGK P G P + G P PP+ RG
Sbjct: 190 AVPGPGPGPKQGPGPGGPKGGKMPGGPKP--------GGGPGLSTPGGHPK-PPH---RG 237
Query: 300 GGTP-DANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQ 341
GG P PP GP PP G P G +++D +
Sbjct: 238 GGEPRGGRQHHPPYHQQHHQGP-PPGG---PGGRSEEKISDSE 276
Score = 65.5 bits (158), Expect = 8e-11
Identities = 78/295 (26%), Positives = 100/295 (33%), Gaps = 52/295 (17%)
Query: 5 APPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPP 64
+PPP L GP P G+ K + P +++++ Q P PP
Sbjct: 33 SPPPGMGLNQNRGPMGP----GPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPP 88
Query: 65 PTPMVDHLVASNPFEDDFGAPKV--GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGG 122
P P P D P V G P +GS P PP
Sbjct: 89 PHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPP-----ASSSAPPATPPTSGAPP 143
Query: 123 GGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQM 182
G GP P P PP PA P G P P + P+ P Q G PP
Sbjct: 144 GSGP-----GPTPTPP----PAVTSAPPGAPPPTPPSSGVPTTP-PQAGG---PPPPPAA 190
Query: 183 MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTS 242
+PGP G GP P G P ++ PG P +PG G P ++
Sbjct: 191 VPGP--GPGPKQGPGPGGPKGGKM-----------PGGP-------KPGGG----PGLST 226
Query: 243 PFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSG 297
P P P G G GG+ +PP + Q+ H G P G +S G
Sbjct: 227 PGGHPKPPHRGGGEPRGGRQHHPP----YHQQHHQGPPPGGPGGRSEEKISDSEG 277
Score = 48.9 bits (115), Expect = 8e-06
Identities = 57/198 (28%), Positives = 67/198 (33%), Gaps = 51/198 (25%)
Query: 2 AASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEF 61
A A PP G GP P P PP PA +
Sbjct: 131 APPATPPTSGAPPGSGPGPTPTPP---------------------------PAVTSAPPG 163
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
APPPTP + + P G P AA P G P P G G G++P G G
Sbjct: 164 APPPTPPSSGVPTTPP---QAGGPPPPPAAVPGPG-PGPKQGPGPGGPKGGKMPGGPKPG 219
Query: 122 GGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQ 181
GG G P P P +G G P G + P P++Q Q PP G
Sbjct: 220 GGPGLSTPGGHPKP------------PHRGGGEPRGGRQHHP--PYHQQHHQ--GPPPG- 262
Query: 182 MMPGPVGGFGPMISPTMG 199
GP G IS + G
Sbjct: 263 ---GPGGRSEEKISDSEG 277
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 87.8 bits (216), Expect = 2e-17
Identities = 100/337 (29%), Positives = 121/337 (35%), Gaps = 48/337 (14%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNT-----QGPAYSHLTE 60
P D ++G G P PP + G G ++ P +K K N GP +
Sbjct: 972 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKG-EVGDPGQKGTKGNKGEHGPPGPP-GPIGP 1029
Query: 61 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST 120
P D + + FGA K F G P P G + G P
Sbjct: 1030 VGQPGAAGADGEPGARGPQGHFGA-KGDEGTRGFNGPPGPIG-------LQGLPGPSGEK 1081
Query: 121 GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
G G P+ PP PP P GPA GP PP G +G N PP
Sbjct: 1082 GETGDVGPMG---PPGPPGPRGPAGPNGADGPQGPPGG------------VG-NLGPPGE 1125
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
+ PG G G P + + PR E G S QPG P P P G P P
Sbjct: 1126 KGEPGESGSPGIQGEPGV-KGPRGERGEKGES---GQPGEPGPPGPKGPTGDDGPKGNPG 1181
Query: 241 TSPFPGPDPGFP---GPGGEDGGK----PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPP 293
FPG DPG P GP G+DG K P P P + P+ P
Sbjct: 1182 PVGFPG-DPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1240
Query: 294 NSSGRGGG---TPDANSLAPPGKAG--GGSGPQPPPG 325
S GR GG D ++ PGK G G +GP PG
Sbjct: 1241 GSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1277
Score = 70.9 bits (172), Expect = 2e-12
Identities = 99/354 (27%), Positives = 119/354 (33%), Gaps = 63/354 (17%)
Query: 13 EGGGGPAPPPAPPSTGRKQGKAGLQ-MKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDH 71
EG G PP P GLQ + P ++ ++ GP PP P
Sbjct: 1057 EGTRGFNGPPGP---------IGLQGLPGPSGEKGETGDVGP-------MGPPGPPGPRG 1100
Query: 72 LVASNPFEDDFGAPK-VGVAAPPF-LGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPL 129
N + G P VG PP G P G +QG + P G G QP
Sbjct: 1101 PAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQP- 1159
Query: 130 RRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPF----NQPLGQNFSP-------- 177
P PP P GP + P+G PG + FP P P GQ+ +
Sbjct: 1160 ---GEPGPPGPKGPTGDDGPKGN----PGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGE 1212
Query: 178 PSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSL 237
P PGP G GP +G+ R G P R GA P + PG+ P
Sbjct: 1213 PGQPGSPGPTGENGP--PGPLGK--RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVG 1268
Query: 238 PPNTSPFPGPDP--GFPGPGGEDGGK----PLNPPASTAFPQEPH-SGSPAAAVNGNQPS 290
P + PGPD G PG G+ G PP P P G A P
Sbjct: 1269 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPG 1328
Query: 291 F-----PPNSSGRGGGTPDANSLAPPGKAG--------GGSGPQPPPGLVYPCG 331
PP G G PG+ G G GP PPGL P G
Sbjct: 1329 LIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1382
Score = 68.6 bits (166), Expect = 1e-11
Identities = 97/351 (27%), Positives = 120/351 (34%), Gaps = 49/351 (13%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P+ +G GP P PP ++GK G+ R QGP S P P
Sbjct: 684 PEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGR-----QGPKGS----LGFPGFPG 734
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
+ G + P P G R G G+ ++GG G P
Sbjct: 735 ASGEKGARGLS--------GKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGP 786
Query: 129 LRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVG 188
+ P P P G F P PG PPG P P Q F +G PGP G
Sbjct: 787 PGERGLPGPQGPNG--FPGPKGPPG--PPGKDGLPGHP-GQRGEVGFQGKTGP--PGPPG 839
Query: 189 GFGPM--ISPTMGQPPRAELGPPS------LSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
GP T R GPP L + G P P PG+ P+
Sbjct: 840 VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA---G 896
Query: 241 TSPFPGPDPGFPGPGGEDGGK----PLNPPASTAFPQE---PHSGSPAAAVNGNQPSFPP 293
FPG + G PG G G K P PP P E SG P P PP
Sbjct: 897 LRGFPG-ERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPP 955
Query: 294 NSSGRGGGTPDANSLAPPGKAG-----GGSGPQPPPGLVYPCGACRSEVND 339
++G G + + P G+ G G GP PPG+ G + EV D
Sbjct: 956 GAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGD-KGEVGD 1005
Score = 65.5 bits (158), Expect = 8e-11
Identities = 95/349 (27%), Positives = 111/349 (31%), Gaps = 56/349 (16%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTG------RKQGKAGLQMKS-PEKKRRKSNTQGPA----- 54
P P G GP PP PP ++G+ G Q K+ P QG A
Sbjct: 793 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP 852
Query: 55 YSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQV 114
PP P L + E G P G P P GF + G+ G
Sbjct: 853 MGERGHPGPPGPPGEQGLPGTAGKEGTKGDP--GPPGAPGKDGPAGLRGFPGERGLPGT- 909
Query: 115 PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP--PPGNMNFPSQPFNQPLG 172
GGP + P PP P G G G P PPG P P
Sbjct: 910 --------AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG----PQGPPGA 957
Query: 173 QNFSPPSGQMMP-GPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG 231
G+ P GP G G + +G P A GPP ++ G P G
Sbjct: 958 AGEKGVPGEKGPIGPTGRDG--VQGPVGLPGPA--GPPGVAGEDGDKGEVGDPGQKGTKG 1013
Query: 232 QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNG-NQPS 290
P PGP PG GP G+ G + PQ G N P
Sbjct: 1014 NKGEHGP------PGP-PGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1066
Query: 291 FP------PNSSGRGGGTPDANSLAPPGKAG--------GGSGPQPPPG 325
P P SG G T D + PPG G G GPQ PPG
Sbjct: 1067 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPG 1115
Score = 63.5 bits (153), Expect = 3e-10
Identities = 98/359 (27%), Positives = 116/359 (32%), Gaps = 64/359 (17%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQ----MKSPEKKRRKSNTQGPAYSHLTEFAPP 64
P GG G PP + G G+Q +K P +R + G P
Sbjct: 1110 PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGE-----PGP 1164
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVP--FGGFRVQGGMAGQVPPGYSTGG 122
P P P DD PK F G P P GG R Q G G G
Sbjct: 1165 PGP-------KGPTGDD--GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1215
Query: 123 GGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-------------GYPPPGNMNFPSQPFNQ 169
G P P PP P GPA + +G G P P+ P +
Sbjct: 1216 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK 1275
Query: 170 P-----------LGQNFSP-PSGQM-MPGPVGGFG-PMISPTMGQPPRAELGPPSLSQRF 215
P +GQ P +GQ PGPVG G P + G + E G P L
Sbjct: 1276 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGA--KGEKGHPGLIGLI 1333
Query: 216 AQPGAPFG------PSPLQRPGQ-GLPSLPPNTSPF-PGPDPGFPGPGGEDGGK----PL 263
PG P P PGQ G +P + P PG PG PGP G G K P
Sbjct: 1334 GPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPG 1393
Query: 264 NPPASTAFPQEP-HSGSPAAAVNGNQPSFPPNS--SGRGGGTPDANSLAPPGKAGGGSG 319
P P H G P + P + S G + P G A G G
Sbjct: 1394 GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1452
Score = 58.5 bits (140), Expect = 1e-08
Identities = 89/351 (25%), Positives = 106/351 (30%), Gaps = 70/351 (19%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQ----MKSPEKKRRKSNTQGPAYSHLTEF 61
PP D G G P P +G G + + P R QGP S
Sbjct: 498 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGS----L 553
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYS-- 119
P P P P G P P G G Q PG
Sbjct: 554 GPQGEP----------------GPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGM 597
Query: 120 TGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-GYPPP-------------------GN 159
G G P ++ PP GP+ PQGP GYP P G
Sbjct: 598 PGSDGPPGHPGKEGPPGTKGNQGPS---GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 654
Query: 160 MNFPSQPFNQPLGQNFSPPSGQM-MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQP 218
FP F +G G++ +PG G GP P P + GPP L +
Sbjct: 655 DGFPG--FKGDIG--VKGDRGEVGVPGSRGEDGPE-GPKGRTGPTGDPGPPGLMGEKGKL 709
Query: 219 GAPFGPSPLQRPGQGLPSLPPNTSPFPGPD-PGFPGPGGEDGGKPLNP---PASTAFPQE 274
G P GLP P P PGFPG GE G + L+ P P
Sbjct: 710 GVP-----------GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 758
Query: 275 PHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPG 325
P G + + G P L P G GP+ PPG
Sbjct: 759 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 809
Score = 49.7 bits (117), Expect = 5e-06
Identities = 61/229 (26%), Positives = 81/229 (35%), Gaps = 31/229 (13%)
Query: 122 GGGGPQPLRRQP------PPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNF 175
GG +P +QP P P+ + N PQ P PG + L +
Sbjct: 230 GGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQD-PTPGEEE-------EILESSL 281
Query: 176 SPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPP---SLSQRFAQPGAPFGPSPLQRPGQ 232
PP + GP G G P + +P GPP + PG P P+ PG+
Sbjct: 282 LPPLEEAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGE 341
Query: 233 GLPSLPPNTSPFPGPDPGFPGPGGED--------GGKPLNPPASTAFPQEPHSGSPAAAV 284
PP + PG D G PGP G G P A + + A +
Sbjct: 342 ---RGPPGRAGLPGSD-GAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARL 397
Query: 285 NGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGLVYPCG 331
P P +GR G S G++G G GP+ P GL P G
Sbjct: 398 ALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPG 446
Score = 44.3 bits (103), Expect = 2e-04
Identities = 73/259 (28%), Positives = 90/259 (34%), Gaps = 51/259 (19%)
Query: 107 QGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP-----PPGNMN 161
Q +A + PPG G G P PL + P P G + ++ PQGP P PPG
Sbjct: 394 QARLALRGPPG-PMGYTGRPGPLGQ---PGSPGLKGESGDLGPQGPRGPQGLTGPPGKAG 449
Query: 162 ------------FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPR------ 203
P P + + F G +PG G G + + PP
Sbjct: 450 RRGRAGADGARGMPGDPGVKG-DRGFDGLPG--LPGEKGHRGDTGAQGLPGPPGEDGERG 506
Query: 204 --AELGPPSLSQRFAQPG--APFGPSPLQRP----GQGLPSLPPNTSPFPGPDPGFPGPG 255
E+GP L G P GP + P G P P S P +PG PG
Sbjct: 507 DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ-GPKGSLGPQGEPGPPGQQ 565
Query: 256 GEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPS-FPPNSSGRGGGTPDANSLAPPGKA 314
G G + L P P + G S PP G+ G PPG
Sbjct: 566 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEG---------PPGTK 616
Query: 315 G--GGSGPQPPPGLVYPCG 331
G G SGPQ P G P G
Sbjct: 617 GNQGPSGPQGPLGYPGPRG 635
Score = 43.9 bits (102), Expect = 3e-04
Identities = 51/164 (31%), Positives = 55/164 (33%), Gaps = 23/164 (14%)
Query: 177 PPSGQMMPGPVGGFGPMISPTMGQPPRAEL-------GPPSLSQ----RFAQPGAPFGPS 225
PP Q PGPVG G G P RA L GPP S RF G GP
Sbjct: 326 PPGIQGNPGPVGDPG-----ERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPV 380
Query: 226 PLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGK-PLNPPASTAFPQEPHSGSPAAAV 284
+ Q L GP PGP G G PL P S E P
Sbjct: 381 VAAQEAQAQAILQQARLALRGP----PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPR 436
Query: 285 NGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGL 326
+ PP +GR G + PG G G G PGL
Sbjct: 437 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGL 480
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 87.8 bits (216), Expect = 2e-17
Identities = 100/337 (29%), Positives = 121/337 (35%), Gaps = 48/337 (14%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNT-----QGPAYSHLTE 60
P D ++G G P PP + G G ++ P +K K N GP +
Sbjct: 951 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKG-EVGDPGQKGTKGNKGEHGPPGPP-GPIGP 1008
Query: 61 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST 120
P D + + FGA K F G P P G + G P
Sbjct: 1009 VGQPGAAGADGEPGARGPQGHFGA-KGDEGTRGFNGPPGPIG-------LQGLPGPSGEK 1060
Query: 121 GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
G G P+ PP PP P GPA GP PP G +G N PP
Sbjct: 1061 GETGDVGPMG---PPGPPGPRGPAGPNGADGPQGPPGG------------VG-NLGPPGE 1104
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
+ PG G G P + + PR E G S QPG P P P G P P
Sbjct: 1105 KGEPGESGSPGIQGEPGV-KGPRGERGEKGES---GQPGEPGPPGPKGPTGDDGPKGNPG 1160
Query: 241 TSPFPGPDPGFP---GPGGEDGGK----PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPP 293
FPG DPG P GP G+DG K P P P + P+ P
Sbjct: 1161 PVGFPG-DPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1219
Query: 294 NSSGRGGG---TPDANSLAPPGKAG--GGSGPQPPPG 325
S GR GG D ++ PGK G G +GP PG
Sbjct: 1220 GSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1256
Score = 70.9 bits (172), Expect = 2e-12
Identities = 99/354 (27%), Positives = 119/354 (33%), Gaps = 63/354 (17%)
Query: 13 EGGGGPAPPPAPPSTGRKQGKAGLQ-MKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDH 71
EG G PP P GLQ + P ++ ++ GP PP P
Sbjct: 1036 EGTRGFNGPPGP---------IGLQGLPGPSGEKGETGDVGP-------MGPPGPPGPRG 1079
Query: 72 LVASNPFEDDFGAPK-VGVAAPPF-LGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPL 129
N + G P VG PP G P G +QG + P G G QP
Sbjct: 1080 PAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQP- 1138
Query: 130 RRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPF----NQPLGQNFSP-------- 177
P PP P GP + P+G PG + FP P P GQ+ +
Sbjct: 1139 ---GEPGPPGPKGPTGDDGPKGN----PGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGE 1191
Query: 178 PSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSL 237
P PGP G GP +G+ R G P R GA P + PG+ P
Sbjct: 1192 PGQPGSPGPTGENGP--PGPLGK--RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVG 1247
Query: 238 PPNTSPFPGPDP--GFPGPGGEDGGK----PLNPPASTAFPQEPH-SGSPAAAVNGNQPS 290
P + PGPD G PG G+ G PP P P G A P
Sbjct: 1248 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPG 1307
Query: 291 F-----PPNSSGRGGGTPDANSLAPPGKAG--------GGSGPQPPPGLVYPCG 331
PP G G PG+ G G GP PPGL P G
Sbjct: 1308 LIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1361
Score = 68.6 bits (166), Expect = 1e-11
Identities = 97/351 (27%), Positives = 120/351 (34%), Gaps = 49/351 (13%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P+ +G GP P PP ++GK G+ R QGP S P P
Sbjct: 663 PEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGR-----QGPKGS----LGFPGFPG 713
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
+ G + P P G R G G+ ++GG G P
Sbjct: 714 ASGEKGARGLS--------GKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGP 765
Query: 129 LRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVG 188
+ P P P G F P PG PPG P P Q F +G PGP G
Sbjct: 766 PGERGLPGPQGPNG--FPGPKGPPG--PPGKDGLPGHP-GQRGEVGFQGKTGP--PGPPG 818
Query: 189 GFGPM--ISPTMGQPPRAELGPPS------LSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
GP T R GPP L + G P P PG+ P+
Sbjct: 819 VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA---G 875
Query: 241 TSPFPGPDPGFPGPGGEDGGK----PLNPPASTAFPQE---PHSGSPAAAVNGNQPSFPP 293
FPG + G PG G G K P PP P E SG P P PP
Sbjct: 876 LRGFPG-ERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPP 934
Query: 294 NSSGRGGGTPDANSLAPPGKAG-----GGSGPQPPPGLVYPCGACRSEVND 339
++G G + + P G+ G G GP PPG+ G + EV D
Sbjct: 935 GAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGD-KGEVGD 984
Score = 65.5 bits (158), Expect = 8e-11
Identities = 95/349 (27%), Positives = 111/349 (31%), Gaps = 56/349 (16%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTG------RKQGKAGLQMKS-PEKKRRKSNTQGPA----- 54
P P G GP PP PP ++G+ G Q K+ P QG A
Sbjct: 772 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP 831
Query: 55 YSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQV 114
PP P L + E G P G P P GF + G+ G
Sbjct: 832 MGERGHPGPPGPPGEQGLPGTAGKEGTKGDP--GPPGAPGKDGPAGLRGFPGERGLPGT- 888
Query: 115 PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP--PPGNMNFPSQPFNQPLG 172
GGP + P PP P G G G P PPG P P
Sbjct: 889 --------AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG----PQGPPGA 936
Query: 173 QNFSPPSGQMMP-GPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG 231
G+ P GP G G + +G P A GPP ++ G P G
Sbjct: 937 AGEKGVPGEKGPIGPTGRDG--VQGPVGLPGPA--GPPGVAGEDGDKGEVGDPGQKGTKG 992
Query: 232 QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNG-NQPS 290
P PGP PG GP G+ G + PQ G N P
Sbjct: 993 NKGEHGP------PGP-PGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1045
Query: 291 FP------PNSSGRGGGTPDANSLAPPGKAG--------GGSGPQPPPG 325
P P SG G T D + PPG G G GPQ PPG
Sbjct: 1046 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPG 1094
Score = 63.5 bits (153), Expect = 3e-10
Identities = 98/359 (27%), Positives = 116/359 (32%), Gaps = 64/359 (17%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQ----MKSPEKKRRKSNTQGPAYSHLTEFAPP 64
P GG G PP + G G+Q +K P +R + G P
Sbjct: 1089 PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGE-----PGP 1143
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVP--FGGFRVQGGMAGQVPPGYSTGG 122
P P P DD PK F G P P GG R Q G G G
Sbjct: 1144 PGP-------KGPTGDD--GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1194
Query: 123 GGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-------------GYPPPGNMNFPSQPFNQ 169
G P P PP P GPA + +G G P P+ P +
Sbjct: 1195 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK 1254
Query: 170 P-----------LGQNFSP-PSGQM-MPGPVGGFG-PMISPTMGQPPRAELGPPSLSQRF 215
P +GQ P +GQ PGPVG G P + G + E G P L
Sbjct: 1255 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGA--KGEKGHPGLIGLI 1312
Query: 216 AQPGAPFG------PSPLQRPGQ-GLPSLPPNTSPF-PGPDPGFPGPGGEDGGK----PL 263
PG P P PGQ G +P + P PG PG PGP G G K P
Sbjct: 1313 GPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPG 1372
Query: 264 NPPASTAFPQEP-HSGSPAAAVNGNQPSFPPNS--SGRGGGTPDANSLAPPGKAGGGSG 319
P P H G P + P + S G + P G A G G
Sbjct: 1373 GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1431
Score = 58.5 bits (140), Expect = 1e-08
Identities = 89/351 (25%), Positives = 106/351 (30%), Gaps = 70/351 (19%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQ----MKSPEKKRRKSNTQGPAYSHLTEF 61
PP D G G P P +G G + + P R QGP S
Sbjct: 477 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGS----L 532
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYS-- 119
P P P P G P P G G Q PG
Sbjct: 533 GPQGEP----------------GPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGM 576
Query: 120 TGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-GYPPP-------------------GN 159
G G P ++ PP GP+ PQGP GYP P G
Sbjct: 577 PGSDGPPGHPGKEGPPGTKGNQGPS---GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 633
Query: 160 MNFPSQPFNQPLGQNFSPPSGQM-MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQP 218
FP F +G G++ +PG G GP P P + GPP L +
Sbjct: 634 DGFPG--FKGDIG--VKGDRGEVGVPGSRGEDGPE-GPKGRTGPTGDPGPPGLMGEKGKL 688
Query: 219 GAPFGPSPLQRPGQGLPSLPPNTSPFPGPD-PGFPGPGGEDGGKPLNP---PASTAFPQE 274
G P GLP P P PGFPG GE G + L+ P P
Sbjct: 689 GVP-----------GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 737
Query: 275 PHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPG 325
P G + + G P L P G GP+ PPG
Sbjct: 738 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 788
Score = 44.3 bits (103), Expect = 2e-04
Identities = 73/259 (28%), Positives = 90/259 (34%), Gaps = 51/259 (19%)
Query: 107 QGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP-----PPGNMN 161
Q +A + PPG G G P PL + P P G + ++ PQGP P PPG
Sbjct: 373 QARLALRGPPG-PMGYTGRPGPLGQ---PGSPGLKGESGDLGPQGPRGPQGLTGPPGKAG 428
Query: 162 ------------FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPR------ 203
P P + + F G +PG G G + + PP
Sbjct: 429 RRGRAGADGARGMPGDPGVKG-DRGFDGLPG--LPGEKGHRGDTGAQGLPGPPGEDGERG 485
Query: 204 --AELGPPSLSQRFAQPG--APFGPSPLQRP----GQGLPSLPPNTSPFPGPDPGFPGPG 255
E+GP L G P GP + P G P P S P +PG PG
Sbjct: 486 DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ-GPKGSLGPQGEPGPPGQQ 544
Query: 256 GEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPS-FPPNSSGRGGGTPDANSLAPPGKA 314
G G + L P P + G S PP G+ G PPG
Sbjct: 545 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEG---------PPGTK 595
Query: 315 G--GGSGPQPPPGLVYPCG 331
G G SGPQ P G P G
Sbjct: 596 GNQGPSGPQGPLGYPGPRG 614
Score = 43.9 bits (102), Expect = 3e-04
Identities = 51/164 (31%), Positives = 55/164 (33%), Gaps = 23/164 (14%)
Query: 177 PPSGQMMPGPVGGFGPMISPTMGQPPRAEL-------GPPSLSQ----RFAQPGAPFGPS 225
PP Q PGPVG G G P RA L GPP S RF G GP
Sbjct: 305 PPGIQGNPGPVGDPG-----ERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPV 359
Query: 226 PLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGK-PLNPPASTAFPQEPHSGSPAAAV 284
+ Q L GP PGP G G PL P S E P
Sbjct: 360 VAAQEAQAQAILQQARLALRGP----PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPR 415
Query: 285 NGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGL 326
+ PP +GR G + PG G G G PGL
Sbjct: 416 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGL 459
Score = 36.6 bits (83), Expect = 0.042
Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 21/129 (16%)
Query: 199 GQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGED 258
GQ R + P +QR Q PS L RP + P + GP G G GE
Sbjct: 231 GQRERPQNQQPHRAQRSPQQQ----PSRLHRP----QNQEPQSQAAHGPR-GLKGEKGEP 281
Query: 259 GGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--G 316
L P P P PA + PP G G D PPG+AG G
Sbjct: 282 A--VLEPGMLVEGPPGPEG--PAGLIG------PPGIQGNPGPVGDPGERGPPGRAGLPG 331
Query: 317 GSGPQPPPG 325
G PPG
Sbjct: 332 SDGAPGPPG 340
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 87.8 bits (216), Expect = 2e-17
Identities = 100/337 (29%), Positives = 121/337 (35%), Gaps = 48/337 (14%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNT-----QGPAYSHLTE 60
P D ++G G P PP + G G ++ P +K K N GP +
Sbjct: 1058 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKG-EVGDPGQKGTKGNKGEHGPPGPP-GPIGP 1115
Query: 61 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST 120
P D + + FGA K F G P P G + G P
Sbjct: 1116 VGQPGAAGADGEPGARGPQGHFGA-KGDEGTRGFNGPPGPIG-------LQGLPGPSGEK 1167
Query: 121 GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
G G P+ PP PP P GPA GP PP G +G N PP
Sbjct: 1168 GETGDVGPMG---PPGPPGPRGPAGPNGADGPQGPPGG------------VG-NLGPPGE 1211
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
+ PG G G P + + PR E G S QPG P P P G P P
Sbjct: 1212 KGEPGESGSPGIQGEPGV-KGPRGERGEKGES---GQPGEPGPPGPKGPTGDDGPKGNPG 1267
Query: 241 TSPFPGPDPGFP---GPGGEDGGK----PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPP 293
FPG DPG P GP G+DG K P P P + P+ P
Sbjct: 1268 PVGFPG-DPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1326
Query: 294 NSSGRGGG---TPDANSLAPPGKAG--GGSGPQPPPG 325
S GR GG D ++ PGK G G +GP PG
Sbjct: 1327 GSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1363
Score = 70.9 bits (172), Expect = 2e-12
Identities = 99/354 (27%), Positives = 119/354 (33%), Gaps = 63/354 (17%)
Query: 13 EGGGGPAPPPAPPSTGRKQGKAGLQ-MKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDH 71
EG G PP P GLQ + P ++ ++ GP PP P
Sbjct: 1143 EGTRGFNGPPGP---------IGLQGLPGPSGEKGETGDVGP-------MGPPGPPGPRG 1186
Query: 72 LVASNPFEDDFGAPK-VGVAAPPF-LGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPL 129
N + G P VG PP G P G +QG + P G G QP
Sbjct: 1187 PAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQP- 1245
Query: 130 RRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPF----NQPLGQNFSP-------- 177
P PP P GP + P+G PG + FP P P GQ+ +
Sbjct: 1246 ---GEPGPPGPKGPTGDDGPKGN----PGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGE 1298
Query: 178 PSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSL 237
P PGP G GP +G+ R G P R GA P + PG+ P
Sbjct: 1299 PGQPGSPGPTGENGP--PGPLGK--RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVG 1354
Query: 238 PPNTSPFPGPDP--GFPGPGGEDGGK----PLNPPASTAFPQEPH-SGSPAAAVNGNQPS 290
P + PGPD G PG G+ G PP P P G A P
Sbjct: 1355 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPG 1414
Query: 291 F-----PPNSSGRGGGTPDANSLAPPGKAG--------GGSGPQPPPGLVYPCG 331
PP G G PG+ G G GP PPGL P G
Sbjct: 1415 LIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1468
Score = 68.6 bits (166), Expect = 1e-11
Identities = 97/351 (27%), Positives = 120/351 (34%), Gaps = 49/351 (13%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P+ +G GP P PP ++GK G+ R QGP S P P
Sbjct: 770 PEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGR-----QGPKGS----LGFPGFPG 820
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
+ G + P P G R G G+ ++GG G P
Sbjct: 821 ASGEKGARGLS--------GKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGP 872
Query: 129 LRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVG 188
+ P P P G F P PG PPG P P Q F +G PGP G
Sbjct: 873 PGERGLPGPQGPNG--FPGPKGPPG--PPGKDGLPGHP-GQRGEVGFQGKTGP--PGPPG 925
Query: 189 GFGPM--ISPTMGQPPRAELGPPS------LSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
GP T R GPP L + G P P PG+ P+
Sbjct: 926 VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA---G 982
Query: 241 TSPFPGPDPGFPGPGGEDGGK----PLNPPASTAFPQE---PHSGSPAAAVNGNQPSFPP 293
FPG + G PG G G K P PP P E SG P P PP
Sbjct: 983 LRGFPG-ERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPP 1041
Query: 294 NSSGRGGGTPDANSLAPPGKAG-----GGSGPQPPPGLVYPCGACRSEVND 339
++G G + + P G+ G G GP PPG+ G + EV D
Sbjct: 1042 GAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGD-KGEVGD 1091
Score = 65.5 bits (158), Expect = 8e-11
Identities = 95/349 (27%), Positives = 111/349 (31%), Gaps = 56/349 (16%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTG------RKQGKAGLQMKS-PEKKRRKSNTQGPA----- 54
P P G GP PP PP ++G+ G Q K+ P QG A
Sbjct: 879 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP 938
Query: 55 YSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQV 114
PP P L + E G P G P P GF + G+ G
Sbjct: 939 MGERGHPGPPGPPGEQGLPGTAGKEGTKGDP--GPPGAPGKDGPAGLRGFPGERGLPGT- 995
Query: 115 PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP--PPGNMNFPSQPFNQPLG 172
GGP + P PP P G G G P PPG P P
Sbjct: 996 --------AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG----PQGPPGA 1043
Query: 173 QNFSPPSGQMMP-GPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG 231
G+ P GP G G + +G P A GPP ++ G P G
Sbjct: 1044 AGEKGVPGEKGPIGPTGRDG--VQGPVGLPGPA--GPPGVAGEDGDKGEVGDPGQKGTKG 1099
Query: 232 QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNG-NQPS 290
P PGP PG GP G+ G + PQ G N P
Sbjct: 1100 NKGEHGP------PGP-PGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1152
Query: 291 FP------PNSSGRGGGTPDANSLAPPGKAG--------GGSGPQPPPG 325
P P SG G T D + PPG G G GPQ PPG
Sbjct: 1153 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPG 1201
Score = 63.5 bits (153), Expect = 3e-10
Identities = 98/359 (27%), Positives = 116/359 (32%), Gaps = 64/359 (17%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQ----MKSPEKKRRKSNTQGPAYSHLTEFAPP 64
P GG G PP + G G+Q +K P +R + G P
Sbjct: 1196 PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGE-----PGP 1250
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVP--FGGFRVQGGMAGQVPPGYSTGG 122
P P P DD PK F G P P GG R Q G G G
Sbjct: 1251 PGP-------KGPTGDD--GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1301
Query: 123 GGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-------------GYPPPGNMNFPSQPFNQ 169
G P P PP P GPA + +G G P P+ P +
Sbjct: 1302 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK 1361
Query: 170 P-----------LGQNFSP-PSGQM-MPGPVGGFG-PMISPTMGQPPRAELGPPSLSQRF 215
P +GQ P +GQ PGPVG G P + G + E G P L
Sbjct: 1362 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGA--KGEKGHPGLIGLI 1419
Query: 216 AQPGAPFG------PSPLQRPGQ-GLPSLPPNTSPF-PGPDPGFPGPGGEDGGK----PL 263
PG P P PGQ G +P + P PG PG PGP G G K P
Sbjct: 1420 GPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPG 1479
Query: 264 NPPASTAFPQEP-HSGSPAAAVNGNQPSFPPNS--SGRGGGTPDANSLAPPGKAGGGSG 319
P P H G P + P + S G + P G A G G
Sbjct: 1480 GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1538
Score = 58.5 bits (140), Expect = 1e-08
Identities = 89/351 (25%), Positives = 106/351 (30%), Gaps = 70/351 (19%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQ----MKSPEKKRRKSNTQGPAYSHLTEF 61
PP D G G P P +G G + + P R QGP S
Sbjct: 584 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGS----L 639
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYS-- 119
P P P P G P P G G Q PG
Sbjct: 640 GPQGEP----------------GPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGM 683
Query: 120 TGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-GYPPP-------------------GN 159
G G P ++ PP GP+ PQGP GYP P G
Sbjct: 684 PGSDGPPGHPGKEGPPGTKGNQGPS---GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 740
Query: 160 MNFPSQPFNQPLGQNFSPPSGQM-MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQP 218
FP F +G G++ +PG G GP P P + GPP L +
Sbjct: 741 DGFPG--FKGDIG--VKGDRGEVGVPGSRGEDGPE-GPKGRTGPTGDPGPPGLMGEKGKL 795
Query: 219 GAPFGPSPLQRPGQGLPSLPPNTSPFPGPD-PGFPGPGGEDGGKPLNP---PASTAFPQE 274
G P GLP P P PGFPG GE G + L+ P P
Sbjct: 796 GVP-----------GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 844
Query: 275 PHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPG 325
P G + + G P L P G GP+ PPG
Sbjct: 845 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 895
Score = 44.3 bits (103), Expect = 2e-04
Identities = 73/259 (28%), Positives = 90/259 (34%), Gaps = 51/259 (19%)
Query: 107 QGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP-----PPGNMN 161
Q +A + PPG G G P PL + P P G + ++ PQGP P PPG
Sbjct: 480 QARLALRGPPG-PMGYTGRPGPLGQ---PGSPGLKGESGDLGPQGPRGPQGLTGPPGKAG 535
Query: 162 ------------FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPR------ 203
P P + + F G +PG G G + + PP
Sbjct: 536 RRGRAGADGARGMPGDPGVKG-DRGFDGLPG--LPGEKGHRGDTGAQGLPGPPGEDGERG 592
Query: 204 --AELGPPSLSQRFAQPG--APFGPSPLQRP----GQGLPSLPPNTSPFPGPDPGFPGPG 255
E+GP L G P GP + P G P P S P +PG PG
Sbjct: 593 DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ-GPKGSLGPQGEPGPPGQQ 651
Query: 256 GEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPS-FPPNSSGRGGGTPDANSLAPPGKA 314
G G + L P P + G S PP G+ G PPG
Sbjct: 652 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEG---------PPGTK 702
Query: 315 G--GGSGPQPPPGLVYPCG 331
G G SGPQ P G P G
Sbjct: 703 GNQGPSGPQGPLGYPGPRG 721
Score = 32.3 bits (72), Expect = 0.79
Identities = 61/236 (25%), Positives = 78/236 (33%), Gaps = 50/236 (21%)
Query: 122 GGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPG-YPPPGNMNFPSQPFNQPLGQNFSPPSG 180
GG +P +QP A P Q P P N SQP + L ++ PP
Sbjct: 230 GGQRERPQNQQPHR--------AQRSPQQQPSRLHRPQNQEPQSQP-TESLYYDYEPPYY 280
Query: 181 QMMPGPVGGFGPMISPTMGQ----------PP----RAELGPPSLSQRF-AQPGAPFGPS 225
+M G PT G+ PP + +L P + RF A+ G
Sbjct: 281 DVMT--TGTTPDYQDPTPGEEEEILESSLLPPLEEEQTDLQVPPTADRFQAEEYGEGGTD 338
Query: 226 PLQRP-----GQGL---------PSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAF 271
P + P G G P+L T+ G G GE G + P
Sbjct: 339 PPEGPYDYTYGYGDDYREETELGPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLV- 397
Query: 272 PQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
P PA + PP G G D PPG+AG G G PPG
Sbjct: 398 EGPPGPEGPAGLIG------PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPG 447
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 86.7 bits (213), Expect = 4e-17
Identities = 105/348 (30%), Positives = 124/348 (35%), Gaps = 68/348 (19%)
Query: 3 ASAPPPPDKLEGGGGPAPP-----PAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSH 57
A+ PP P GGPA P P PP+ K GL +P K + S
Sbjct: 1084 AATPPSPK-----GGPATPSPKGAPMPPAATPPSPKGGLA--TPPHKGAPTTPAATPPSP 1136
Query: 58 LTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGF--RVQGGMAGQVP 115
A PP A+ P +PK G+A PP G+P +GG+A P
Sbjct: 1137 KGGLATPPPKGAPTTPAATP-----PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSP 1191
Query: 116 PGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQG----PGYPPP---GNMNFPSQPFN 168
G T P PP+P G P+G P PP G + PS P
Sbjct: 1192 KGAPT-----------TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS-PKG 1239
Query: 169 QPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQP---GAP---- 221
P +PPS P GG P P G P PPSL A P GAP
Sbjct: 1240 APTTPAATPPS------PKGG--PATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAV 1291
Query: 222 -FGPSP----LQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPH 276
PSP P +G P+ P T P P PG P P G PPA T P P
Sbjct: 1292 VTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAP-----TPPAVT--PPSPK 1344
Query: 277 SGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPP 324
A + P S + G TP A A P GG + P P
Sbjct: 1345 GTPTLPATTPSSKGGPTTPSSKEGPTPPA---ATPSHKGGPAMTPPSP 1389
Score = 75.1 bits (183), Expect = 1e-13
Identities = 90/339 (26%), Positives = 115/339 (33%), Gaps = 64/339 (18%)
Query: 3 ASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFA 62
A A P P + P P PP+ K G SP ++A
Sbjct: 921 ARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP------------------KWA 962
Query: 63 PPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGG 122
P P A+ P +PK G A P G+P P PP GG
Sbjct: 963 PTPP-------AATP-----PSPKGGPATPSPKGAPTP----------PAATPPS-PKGG 999
Query: 123 GGGPQPLRRQPPP--FPPNPMG-PAFNMPPQGPGYPPPGNMNFP-SQPFNQPLGQNFSPP 178
P P PP PP+P G PA P+G PP P P PL +
Sbjct: 1000 PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTT 1059
Query: 179 SGQMMPGPVGG-FGPMI----SPTMGQPPRAELGPPSLSQRFA-QPGAPFGPSP----LQ 228
+P P GG P + +P PP + GP + S + A P A PSP
Sbjct: 1060 PAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLAT 1119
Query: 229 RPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQ 288
P +G P+ P T P P P P G P P A+ P+ + P
Sbjct: 1120 PPHKGAPTTPAATPPSPKGGLATPPP----KGAPTTPAATPPSPKGGLATPPPKGAPTTP 1175
Query: 289 PSFPPNSSG-----RGGGTPDANSLAPPGKAGGGSGPQP 322
+ PP+ G G P + PP GG + P P
Sbjct: 1176 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP 1214
Score = 72.8 bits (177), Expect = 5e-13
Identities = 98/378 (25%), Positives = 126/378 (33%), Gaps = 76/378 (20%)
Query: 3 ASAPPPPDKLEGGGGPAPP---PAPPSTGRKQGKAGLQMKSPE-----------KKRRKS 48
A+ PP P +GG PP P P+ K GL SP+ +
Sbjct: 1153 AATPPSP---KGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1209
Query: 49 NTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGA-----PKVGVAAPPFLGSPVPFGG 103
T P + T A PP+P S A PK G A PP G+P P
Sbjct: 1210 ATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTP--- 1266
Query: 104 FRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPF---PPNPMGPAFNMPPQGPGYPPPGNM 160
PP S GG P + P P PP+P G PP+G PP
Sbjct: 1267 -------PAATPP--SLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAAT- 1316
Query: 161 NFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGA 220
P P P PP G P V P +PT+ + G P+ P
Sbjct: 1317 --PPSPKGSP---GTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTP 1371
Query: 221 PFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGK---PLNPPASTAFP----- 272
P +P + G P T P P P P P G+ PL+P + A P
Sbjct: 1372 P-AATPSHKGG------PAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREG 1424
Query: 273 -QEPHSG--SPAAAVNGNQPSFPPNSSGRGG-------GTPDANSLAPPG--------KA 314
P G +P A + P S+ +GG G P ++ PP +
Sbjct: 1425 AATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQV 1484
Query: 315 GGGSGPQPPPGLVYPCGA 332
S P+ P P GA
Sbjct: 1485 ATSSSPKKAPATPAPMGA 1502
Score = 72.4 bits (176), Expect = 7e-13
Identities = 99/363 (27%), Positives = 121/363 (33%), Gaps = 71/363 (19%)
Query: 3 ASAPPPPDKLEGGGGPAPP-----PAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSH 57
A+ PP P GGPA P P PP+ K G SP K PA +
Sbjct: 967 AATPPSPK-----GGPATPSPKGAPTPPAATPPSPKGGPATPSP-----KGAPTPPAVT- 1015
Query: 58 LTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPG 117
PP+P A+ PF PK G + PP P P G A +P G
Sbjct: 1016 ------PPSPKGSP--AATPF------PK-GASTPPAATPPSPKGS-----PAATPLPKG 1055
Query: 118 YSTG---------GGGGPQPLRRQPPP---FPPNPMGPAFNMPPQGPGYPPPGNMNFPSQ 165
T GG L+ P P PP+P G P+G PP P
Sbjct: 1056 APTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKG 1115
Query: 166 PFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQP---GAPF 222
P + P P GG P G P PPS A P GAP
Sbjct: 1116 GLATPPHKGAPTTPAATPPSPKGGLA--TPPPKGAPTTPAATPPSPKGGLATPPPKGAPT 1173
Query: 223 GPS---PLQRPG------QGLPSLPPNTSPFPGPDPGFPGPGG---EDGGKPLNPPASTA 270
P+ P + G +G P+ P T P P P P G P +P A
Sbjct: 1174 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1233
Query: 271 FPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGP----QPPPGL 326
P + + AA + P +G TP A PP GG + P P P +
Sbjct: 1234 TPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPA--ATPPSLKGGLATPPHKGAPNPAV 1291
Query: 327 VYP 329
V P
Sbjct: 1292 VTP 1294
Score = 61.6 bits (148), Expect = 1e-09
Identities = 67/235 (28%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 133 PPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSP-PSG-QMMPGPVGGF 190
PP P P P +GP P P S + P +P P G P P G
Sbjct: 881 PPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGA- 939
Query: 191 GPMISPTMGQPPRAELGPPSLSQRFAQ-PGAPFGPSPLQRPG----QGLPSLPPNTSPFP 245
+P PP + GP + S ++A P A PSP P +G P+ P T P P
Sbjct: 940 ---PTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSP 996
Query: 246 GPDPGFPGPGGEDGGKPLNP------PASTAFPQEPHS----------GSPAAA-VNGNQ 288
P P P G + P PA+T FP+ + GSPAA +
Sbjct: 997 KGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGA 1056
Query: 289 PSFPPNS--SGRGG-------GTPDANSLAPPGKAGGGSGPQP-----PPGLVYP 329
P+ P + S +GG G P + PP GG + P P PP P
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPP 1111
Score = 60.8 bits (146), Expect = 2e-09
Identities = 79/281 (28%), Positives = 96/281 (34%), Gaps = 39/281 (13%)
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAP-PFLGSPVPFGGFRVQGGMAGQVPPGY--STG 121
PTP V +L PF PK G A P P + + A P G S
Sbjct: 886 PTPSVVNL----PF------PKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPS 935
Query: 122 GGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPF-----NQPLGQNFS 176
G P P PP P P+ P P PP P+ P P S
Sbjct: 936 PKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS 995
Query: 177 PPSGQMMPGPVGG-FGPMISP--TMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRP-GQ 232
P G P P G P ++P G P + + A P +P G SP P +
Sbjct: 996 PKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKG-SPAATPLPK 1054
Query: 233 GLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNG-NQPSF 291
G P+ P T P P P P G PPA+T P P G + G P
Sbjct: 1055 GAPTTPAATLPSPKGGPATPSLKGAP-----TPPAAT--PPSPKGGPATPSPKGAPMPPA 1107
Query: 292 PPNSSGRGG-------GTPDANSLAPPGKAGGGSGPQPPPG 325
S +GG G P + PP GG + P PP G
Sbjct: 1108 ATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATP-PPKG 1147
Score = 53.9 bits (128), Expect = 3e-07
Identities = 82/337 (24%), Positives = 107/337 (31%), Gaps = 63/337 (18%)
Query: 18 PAPPPA--PPSTGRKQGKAGLQMKSPEKKRRK--------SNTQGPAYSHLTEFAPPPTP 67
P+ PPA PP T + G + +P K ++ + LT A P+P
Sbjct: 737 PSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLTYLADSPSP 796
Query: 68 M---VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGG 124
+ V P + P + SPV F + ++ Q G
Sbjct: 797 LGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVE-ASFLPENSLSFQ-------GSKD 848
Query: 125 GPQPLRRQPPPFPPNPMGPAFNMP--PQGPGYPP-----PGNMNFPSQPFNQPLGQNFSP 177
P PP P P+ P P+G PP P +N P P
Sbjct: 849 SPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPF------------P 896
Query: 178 PSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSL 237
G P P P +S T P +A P A G P PSP +G P+
Sbjct: 897 KEGPATPAPKQA--PALSMTSSSPKKARATP-------APKGIPASPSP-----KGAPTP 942
Query: 238 PPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNG--NQPSFPPNS 295
P T P P P P P PPA+T P P G + G P+ P S
Sbjct: 943 PAATPPSPKGGPATPSPKWAP-----TPPAAT--PPSPKGGPATPSPKGAPTPPAATPPS 995
Query: 296 SGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGA 332
G TP P S P +P GA
Sbjct: 996 PKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGA 1032
Score = 47.0 bits (110), Expect = 3e-05
Identities = 77/321 (23%), Positives = 98/321 (30%), Gaps = 73/321 (22%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRR------KSNTQGPAYSHLT 59
P P EG P PP A PS K G M P KR K + PA L+
Sbjct: 1360 PTTPSSKEG---PTPPAATPSH-----KGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLS 1411
Query: 60 EFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYS 119
P TP+ A+ P G PP + +PV G G +
Sbjct: 1412 PKKAPATPVTREGAAT---------PSKGDLTPPAV-TPVSLKKAPATSAPKG----GPA 1457
Query: 120 TGGGGGPQPLRRQPPPFPPNPMGP----AFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNF 175
T G L PP P P P + P + P P P M P+ P P
Sbjct: 1458 TPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAP--MGAPTLPAVIPSSPKE 1515
Query: 176 SPPSGQMMPGPVGGFGPMIS---------------PTMGQP----------PRAELGPPS 210
P + P+ ++S P M P P+ PS
Sbjct: 1516 VPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPS 1575
Query: 211 LSQRFAQP--------GAPFGPSPLQRPG------QGLPSLPPNTSPFPGPDPGFPGPGG 256
+ + P GAP L P + P+ P T P P P P P G
Sbjct: 1576 SKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKG 1635
Query: 257 EDGGKPLNPPASTAFPQEPHS 277
P+ P + P P S
Sbjct: 1636 TPTSPPVTPSSLKDSPTSPAS 1656
Score = 33.9 bits (76), Expect = 0.27
Identities = 56/240 (23%), Positives = 78/240 (32%), Gaps = 48/240 (20%)
Query: 127 QPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPG-------NMNFPSQPFNQPLGQNFSPPS 179
QP PPP P P + Q +P P + FP L +P +
Sbjct: 40 QPGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFPQSSSGTALPLGTAPEA 99
Query: 180 GQMMPGPVGG---------FGPMISPTMGQPP--RAELGPPSLSQRFAQPGAPFGPSPLQ 228
+P +G PMI+PT+ P A L +L+ Q + F P+ L
Sbjct: 100 PTFLPNLIGPPISPAALALASPMIAPTLKGTPSSSAPLALVALAPHSVQKSSAFPPNLLT 159
Query: 229 RPGQ------------GLPSLP--PNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQE 274
P P P P T+ P P P G P P + P
Sbjct: 160 SPPSVAVAESGSVITLSAPIAPSEPKTNLNKVPSEVVPNP----KGTPSPPCIVSTVPY- 214
Query: 275 PHSGSPAAAVNGNQPSFPPN--------SSGRGGGTPDANSLAPPGKAGGGS--GPQPPP 324
H +P A++ S P +S + T ++ L P G S GP PP
Sbjct: 215 -HCVTPMASIQSGVASLPQTTPTTTLAIASPQVKDTTISSVLISPQNPGSLSLKGPVSPP 273
Score = 31.2 bits (69), Expect = 1.8
Identities = 35/126 (27%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 201 PPRAELGPPSLSQRFAQPGAPFGPSPLQRP-------GQGLPSLPPNTSPFPGPDP---- 249
P A P+ Q QP A P+ GQ P+LPP SP P P
Sbjct: 2 PGEATETVPATEQELPQPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSAA 61
Query: 250 ----GFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDA 305
FP P + P FPQ + P+F PN G +P A
Sbjct: 62 NQASPFPSP-----STIASTPLEVPFPQSSSGTALPLGTAPEAPTFLPNLIG-PPISPAA 115
Query: 306 NSLAPP 311
+LA P
Sbjct: 116 LALASP 121
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 86.3 bits (212), Expect = 5e-17
Identities = 102/334 (30%), Positives = 119/334 (35%), Gaps = 93/334 (27%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGK---AGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
P+ GG P PP G+ +G+ G Q + P + K P + ++ PPP
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ-GPPP 94
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
P G P+ PP QGG Q PP G G
Sbjct: 95 RP---------------GKPE---GQPP-------------QGGNQSQGPPP-RPGKPEG 122
Query: 126 PQPL----RRQPPPFPPNPMGPAFNMPPQGPGY---PPPGNMNFPSQPFNQPLGQNFSPP 178
P P + PPP P P GP PPQG PPP P +P P P
Sbjct: 123 PPPQGGNQSQGPPPRPGKPEGP----PPQGGNQSQGPPPR----PGKPEGPP------PQ 168
Query: 179 SGQMMPGPVGGFGPMISPTMGQPPRA---ELGPPSLSQRFAQPGAPFGPSPLQRPGQGLP 235
G GP P G PP+ GPP +PG P GP P QG
Sbjct: 169 GGNQSQGPP----PHPGKPEGPPPQGGNQSQGPPP------RPGKPEGPPP-----QG-- 211
Query: 236 SLPPNTSPFPGPDPGFP-GPGGEDGGKPLNPPASTAFPQEPHSGSPAAAV--NGNQPSF- 291
N S P P PG P GP + G KP PP PH G P GN+P
Sbjct: 212 ---GNQSQGPPPRPGKPEGPPSQGGNKPQGPP--------PHPGKPQGPPPQEGNKPQRP 260
Query: 292 PPNSSGRGGGTPDANSLAP-PGKAGGGSGPQPPP 324
PP +G P N P P AG GP PPP
Sbjct: 261 PPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPP 294
Score = 81.6 bits (200), Expect = 1e-15
Identities = 95/302 (31%), Positives = 111/302 (36%), Gaps = 72/302 (23%)
Query: 6 PPPPDKLEG----GGGPAPPPAPPSTGRKQG---KAGLQMKSPEKKRRKSNTQGPAYSHL 58
PPPP K EG GG + P PP G+ +G + G Q + P + K Q P +
Sbjct: 51 PPPPGKPEGRPPQGGNQSQGP-PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQ 109
Query: 59 TEFAPPPTPMVDHLVASNPFEDDFGAPKVG----VAAPPFLGSPVPFGGFRVQGGMAGQV 114
++ PPP P G P G PP G P G QGG Q
Sbjct: 110 SQ-GPPPRPGKPE-----------GPPPQGGNQSQGPPPRPGKPE---GPPPQGGNQSQG 154
Query: 115 PPGYSTGGGGGPQPL----RRQPPPFPPNPMGPAFNMPPQGPGY---PPPGNMNFPSQPF 167
PP G GP P + PPP P P GP PPQG PPP P +P
Sbjct: 155 PPP-RPGKPEGPPPQGGNQSQGPPPHPGKPEGP----PPQGGNQSQGPPPR----PGKPE 205
Query: 168 NQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ-----PGAPF 222
P P G GP P G+P GPPS Q PG P
Sbjct: 206 GPP------PQGGNQSQGP--------PPRPGKPE----GPPSQGGNKPQGPPPHPGKPQ 247
Query: 223 GPSPLQ--RPGQGLPSLPPNTSPFPG--PDPGFPGPGGEDGGKPLNPPASTAFPQEPHSG 278
GP P + +P + P P P PG P P P G+ G P PP P P G
Sbjct: 248 GPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPP--PPPQGGRPHRPPQG 305
Query: 279 SP 280
P
Sbjct: 306 QP 307
Score = 80.1 bits (196), Expect = 3e-15
Identities = 87/259 (33%), Positives = 97/259 (37%), Gaps = 58/259 (22%)
Query: 103 GFRVQGGMAGQ---VPPGYSTGGG--GGPQPLRRQPPPFPPNPMGPAFNMPPQGPGY--- 154
G R QGG Q PPG G GG Q + PPP P P GP PPQG
Sbjct: 38 GRRPQGGNQPQRTPPPPGKPEGRPPQGGNQS--QGPPPRPGKPEGP----PPQGGNQSQG 91
Query: 155 PPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISP-------TMGQPPRAEL- 206
PPP P +P QP P G GP G P + G PPR
Sbjct: 92 PPPR----PGKPEGQP------PQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKP 141
Query: 207 -GPPSLSQRFAQ-----PGAPFGPSPL-------QRPGQGLPSLPP----NTSPFPGPDP 249
GPP +Q PG P GP P P G P PP N S P P P
Sbjct: 142 EGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRP 201
Query: 250 GFP-GPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTP--DAN 306
G P GP + G + PP P+ P S GN+P PP G+ G P + N
Sbjct: 202 GKPEGPPPQGGNQSQGPPPRPGKPEGPPSQG------GNKPQGPPPHPGKPQGPPPQEGN 255
Query: 307 SLAPPGKAGGGSGPQPPPG 325
P G GP PP G
Sbjct: 256 KPQRPPPPGRPQGPPPPGG 274
Score = 75.1 bits (183), Expect = 1e-13
Identities = 82/250 (32%), Positives = 91/250 (36%), Gaps = 66/250 (26%)
Query: 124 GGPQPLRRQPPPFPPNPMGPAFNMPPQGPGY---PPPGNMNFPSQPFNQPLGQNFSPPSG 180
GG QP R PPP P PPQG PPP P +P P P G
Sbjct: 43 GGNQPQRTPPPPGKPE------GRPPQGGNQSQGPPPR----PGKPEGPP------PQGG 86
Query: 181 QMMPGPVGGFGPMISPTMGQPPRA---ELGPPSLSQRFAQPGAPFGP---------SPLQ 228
GP P GQPP+ GPP +PG P GP P
Sbjct: 87 NQSQGP----PPRPGKPEGQPPQGGNQSQGPP------PRPGKPEGPPPQGGNQSQGPPP 136
Query: 229 RPG--QGLPSLPPNTSPFPGPDPGFP-GPGGEDGGKPLNPPASTAFPQEPHSGSPAA--A 283
RPG +G P N S P P PG P GP + G + PP PH G P
Sbjct: 137 RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP--------PHPGKPEGPPP 188
Query: 284 VNGNQPSFPPNSSGRGGGTPDA---NSLAPPGKAG--------GGSGPQ-PPPGLVYPCG 331
GNQ PP G+ G P S PP + G GG+ PQ PPP P G
Sbjct: 189 QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQG 248
Query: 332 ACRSEVNDDQ 341
E N Q
Sbjct: 249 PPPQEGNKPQ 258
Score = 63.2 bits (152), Expect = 4e-10
Identities = 72/226 (31%), Positives = 89/226 (39%), Gaps = 58/226 (25%)
Query: 6 PPPPDKLEG----GGGPAPPPAPPSTGRKQG---KAGLQMKSPEKKRRKSNTQGPAYSHL 58
PP P K EG GG + P PP G+ +G + G Q + P + K P +
Sbjct: 114 PPRPGKPEGPPPQGGNQSQGP-PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQ 172
Query: 59 TEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAA---PPFLGSPVPFGGFRVQGGMAGQVP 115
++ PP +P + + P+ G + PP G P G QGG Q P
Sbjct: 173 SQGPPP-----------HPGKPEGPPPQGGNQSQGPPPRPGKPE---GPPPQGGNQSQGP 218
Query: 116 P-------GYSTGGGGGPQPLRRQPPPFPPNPMGPA---FNMP--------PQGPGYPPP 157
P G + GG PQ PPP P P GP N P PQGP PPP
Sbjct: 219 PPRPGKPEGPPSQGGNKPQG----PPPHPGKPQGPPPQEGNKPQRPPPPGRPQGP--PPP 272
Query: 158 GNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPR 203
G P QP P G+ PP P P G G P GQPP+
Sbjct: 273 GGN--PQQPLPPPAGKPQGPP-----PPPQG--GRPHRPPQGQPPQ 309
Score = 50.1 bits (118), Expect = 4e-06
Identities = 44/153 (28%), Positives = 54/153 (35%), Gaps = 12/153 (7%)
Query: 179 SGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG--QGLPS 236
S + P + G P G P+ PP + G P RPG +G P
Sbjct: 24 SQEESPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPP 83
Query: 237 LPPNTSPFPGPDPGFP-GPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNS 295
N S P P PG P G + G + PP P+ P GNQ PP
Sbjct: 84 QGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGP------PPQGGNQSQGPPPR 137
Query: 296 SGRGGGTPDA---NSLAPPGKAGGGSGPQPPPG 325
G+ G P S PP + G GP P G
Sbjct: 138 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 170
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 85.5 bits (210), Expect = 8e-17
Identities = 92/298 (30%), Positives = 112/298 (37%), Gaps = 53/298 (17%)
Query: 88 GVAAPPFLGSPVPFG-GFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFN 146
G A PP S F G R +G G VP G G GP PPPFP P
Sbjct: 184 GKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGG---PPPPFPAGQTPPR-- 238
Query: 147 MPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAEL 206
PP GP PP G PP GQ++P P+ G P R +
Sbjct: 239 -PPLGPPGPP---------------GPPGPPPPGQVLPPPLAG----------PPNRGDR 272
Query: 207 GPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDG------G 260
PP + PG PFG PL G P P P PGP P GP G
Sbjct: 273 PPPPV----LFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
Query: 261 KPLNPPASTAFPQE---PHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGG 317
PL PP + A P P G+P A + N FPP ++ G P ++S PP G
Sbjct: 329 GPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTN---SGMPTSDSRGPPPTDPYG 385
Query: 318 SGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASA 375
P G P G D L EA ++ +R ++ SA ++ASA
Sbjct: 386 RPPPYDRGDYGPPG----REMDTARTPLSEAEFEEIMNRN-RAISSSAISRAVSDASA 438
Score = 65.1 bits (157), Expect = 1e-10
Identities = 69/217 (31%), Positives = 81/217 (37%), Gaps = 40/217 (18%)
Query: 5 APPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPP 64
A P D+ G GP PP P G+ + L P GP PP
Sbjct: 210 AVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGP------PGPPGP---------PP 254
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGG 124
P ++ +A P D P V PF G P P G G PP G
Sbjct: 255 PGQVLPPPLAGPPNRGDRPPPPVLFPGQPF-GQP-PLGPL-----PPGPPPPVPGYGPPP 307
Query: 125 GPQPLRRQPP----PFPPNPMGP-----AFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNF 175
GP P ++ PP PFPP P GP PP PG PPPG P P P F
Sbjct: 308 GPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPG-PPPGAP--PPAPHVNP--AFF 362
Query: 176 SPPSGQMMPGPVGGFGPMISPTMGQPP---RAELGPP 209
PP+ MP GP + G+PP R + GPP
Sbjct: 363 PPPTNSGMP-TSDSRGPPPTDPYGRPPPYDRGDYGPP 398
Score = 55.8 bits (133), Expect = 7e-08
Identities = 50/155 (32%), Positives = 55/155 (35%), Gaps = 22/155 (14%)
Query: 179 SGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLP 238
SG+ GP GG P G+ G RF P P GP P GQ P P
Sbjct: 181 SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQ-TPPRP 239
Query: 239 PNTSPFPGPDPGFPGPGGEDGGKPL--------NPPASTAFPQEPHSGSPAAAVNGNQPS 290
P P P P P P P G+ PL PP FP +P P + P
Sbjct: 240 PLGPPGP-PGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPL---PPG 295
Query: 291 FPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPG 325
PP G G PPG GP PPPG
Sbjct: 296 PPPPVPGYG---------PPPGPPPPQQGPPPPPG 321
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 85.5 bits (210), Expect = 8e-17
Identities = 115/365 (31%), Positives = 126/365 (34%), Gaps = 82/365 (22%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P L G G P P P G K + + P+ R +G F P
Sbjct: 198 PPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKG--------FGMP- 248
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPPFL-GSPVPFGGFRVQGGMAGQVPPGYSTGGGG 124
GAP GV PP + G P P G+ G PG TG G
Sbjct: 249 -----------------GAP--GVKGPPGMHGPPGPV-------GLPGVGKPGV-TGFPG 281
Query: 125 GPQPLRRQPPPFPPNPMG----PAFNMPPQGPGYPPPGNMNFPSQP-FNQPLGQNFSPPS 179
PL + P P P G P PP PG PG P QP F G+ P
Sbjct: 282 PQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPG- 340
Query: 180 GQMMPGPVG-------GF-GPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG 231
+PGP G GF GP MG P A LGP PG P PG
Sbjct: 341 ---LPGPPGLPGIGKPGFPGPKGDRGMGGVPGA-LGPRGEKGPIGAPGIGGPPGEPGLPG 396
Query: 232 QGLPSLPPNTSPFPGP--------DPGFPGPGGEDG-----GKP-----LNPPASTAFPQ 273
P PP FPGP G PGP GE G GKP + PP P
Sbjct: 397 IPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPG 456
Query: 274 EPHSGSPAAAVNGNQPSFP--PNSSGRGG--GTP-DANSLAPPG--KAGGGSGPQPPPGL 326
G A P P P G G G P D PPG GG SGP PPG+
Sbjct: 457 P--IGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGI 514
Query: 327 VYPCG 331
P G
Sbjct: 515 PGPKG 519
Score = 77.8 bits (190), Expect = 2e-14
Identities = 98/373 (26%), Positives = 123/373 (32%), Gaps = 99/373 (26%)
Query: 20 PPPAPPSTGRKQ-----------GKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
PP PP + Q K GL M K G Y HL ++ P
Sbjct: 41 PPQMPPQIPQYQPLGQQVPHMPLAKDGLAMG----KEMPHLQYGKEYPHLPQYMKEIQP- 95
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
AP++G A P G +P R + G G+ P
Sbjct: 96 ---------------APRMGKEAVPKKGKEIPLASLRGEQGPRGEPGP------------ 128
Query: 129 LRRQPPPFPPNPMG---PAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQM--- 182
+ PP PP G P P GYP G P P +P G++
Sbjct: 129 ---RGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMP-GKPGAMGMPGAKGEIGQK 184
Query: 183 -------MPGPVGGFGPMISPTMGQP----------PRAELGP-----------PSLSQR 214
+PGP G GP P +G+P P+ + GP P +
Sbjct: 185 GEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKG 244
Query: 215 FAQPGAP--FGPSPLQRP--GQGLPSL-PPNTSPFPGPD-----PGFPGPGGEDGGKPLN 264
F PGAP GP + P GLP + P + FPGP PG PG G G P+
Sbjct: 245 FGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQG--PIG 302
Query: 265 PPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRG----GGTPDANSLAPPGKAG--GGS 318
P P P G P QP FP +G G P + PG G G
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDR 362
Query: 319 GPQPPPGLVYPCG 331
G PG + P G
Sbjct: 363 GMGGVPGALGPRG 375
Score = 68.2 bits (165), Expect = 1e-11
Identities = 85/269 (31%), Positives = 100/269 (37%), Gaps = 60/269 (22%)
Query: 88 GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNM 147
GV P G P G + G G++ G G P+ P PP P G
Sbjct: 156 GVGKPGMPGMPGKPGAMGMPGAK-GEI------GQKGEIGPMGIPGPQGPPGPHGLPGIG 208
Query: 148 PPQGPGYP----PPGNMNFPSQPFNQPL-----GQNFSPPSGQMMPGPVGGF---GPMIS 195
P GPG P P G+ P Q L + F P + GP G GP+
Sbjct: 209 KPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGL 268
Query: 196 PTMGQP-------PRAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLP----PNTSP 243
P +G+P P+ LG P PG P P+ PG QG P +P P
Sbjct: 269 PGVGKPGVTGFPGPQGPLGKP------GAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDG 322
Query: 244 FPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRG-GGT 302
PG PGFPG GE G L P P P G +P FP RG GG
Sbjct: 323 IPG-QPGFPGGKGEQGLPGLPGP-----PGLPGIG---------KPGFPGPKGDRGMGGV 367
Query: 303 PDANSLAPPGKAG-----GGSGPQPPPGL 326
P A L P G+ G G GP PGL
Sbjct: 368 PGA--LGPRGEKGPIGAPGIGGPPGEPGL 394
Score = 60.1 bits (144), Expect = 4e-09
Identities = 108/405 (26%), Positives = 134/405 (33%), Gaps = 71/405 (17%)
Query: 3 ASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGL--QMKSPEKKRRKSNTQGPAYSHLTE 60
A P P G G PP P G K G+ G+ Q P K + P L
Sbjct: 291 APGEPGPQGPIGVPGVQGPPGIPGIG-KPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPG 349
Query: 61 FAPP--PTPMVDHLVASNPF-------EDDFGAPKVG--VAAPPFLGSPVPFG------- 102
P P P D + P + GAP +G P G P P G
Sbjct: 350 IGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGF 409
Query: 103 -GFRVQGGMAG-QVPPGYSTGGG-----GGPQPLRRQPPPFP---PNPMGPAFNMPPQG- 151
G + +GG+ G Q PPG G G P L PP P P+GP +G
Sbjct: 410 PGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGV 469
Query: 152 ---PGYP----PPGNMNFPS-QPFNQPLG-QNFSPPSGQMMPGPVGGFGPMISPTMGQPP 202
PG P P G P Q P G PSG + GP G GP P + PP
Sbjct: 470 PGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPI--GPPGIPGPKGEPGLPGPP 527
Query: 203 RAE-LGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGK 261
+G P ++ PG P P +PG P PG PGP G
Sbjct: 528 GFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGP-------------PGPPGPPGPPAVM 574
Query: 262 PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQ 321
P PP PQ + ++G + PP++ G G + P + P
Sbjct: 575 PPTPP-----PQGEYLPDMGLGIDGVK---PPHAYGAKKGKNGGPAYEMPAFTAELTAPF 626
Query: 322 PPPGLVYPCGAC----RSEVNDDQDAILCEASCQKWF--HRECTG 360
PP G R N CE +F H C G
Sbjct: 627 PPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKG 671
Score = 46.6 bits (109), Expect = 4e-05
Identities = 67/223 (30%), Positives = 85/223 (38%), Gaps = 44/223 (19%)
Query: 125 GPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMP 184
G +PL PP PP MPPQ P Y P G Q + PL ++ +M
Sbjct: 32 GIKPL---PPQIPPQ-------MPPQIPQYQPLGQ-----QVPHMPLAKDGLAMGKEMPH 76
Query: 185 GPVGGFGPMI---------SPTMGQPPRAELGP--PSLSQRFAQ-----PGAPFGPSPLQ 228
G P + +P MG+ + G P S R Q PG P P
Sbjct: 77 LQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPG 136
Query: 229 RPGQGLPSL--PPNTSPFPG-PDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVN 285
PG G+P + P +PG PG PG G+ G + P A Q+ G +
Sbjct: 137 LPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGM-PGAKGEIGQKGEIG--PMGIP 193
Query: 286 GNQPSFPPNSSGRGG-GTPDANSLAPPGKAG--GGSGPQPPPG 325
G P PP G G G P L PG+ G G GP+ PG
Sbjct: 194 G--PQGPPGPHGLPGIGKPGGPGL--PGQPGPKGDRGPKGLPG 232
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 85.5 bits (210), Expect = 8e-17
Identities = 115/365 (31%), Positives = 126/365 (34%), Gaps = 82/365 (22%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P L G G P P P G K + + P+ R +G F P
Sbjct: 198 PPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKG--------FGMP- 248
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPPFL-GSPVPFGGFRVQGGMAGQVPPGYSTGGGG 124
GAP GV PP + G P P G+ G PG TG G
Sbjct: 249 -----------------GAP--GVKGPPGMHGPPGPV-------GLPGVGKPGV-TGFPG 281
Query: 125 GPQPLRRQPPPFPPNPMG----PAFNMPPQGPGYPPPGNMNFPSQP-FNQPLGQNFSPPS 179
PL + P P P G P PP PG PG P QP F G+ P
Sbjct: 282 PQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPG- 340
Query: 180 GQMMPGPVG-------GF-GPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG 231
+PGP G GF GP MG P A LGP PG P PG
Sbjct: 341 ---LPGPPGLPGIGKPGFPGPKGDRGMGGVPGA-LGPRGEKGPIGAPGIGGPPGEPGLPG 396
Query: 232 QGLPSLPPNTSPFPGP--------DPGFPGPGGEDG-----GKP-----LNPPASTAFPQ 273
P PP FPGP G PGP GE G GKP + PP P
Sbjct: 397 IPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPG 456
Query: 274 EPHSGSPAAAVNGNQPSFP--PNSSGRGG--GTP-DANSLAPPG--KAGGGSGPQPPPGL 326
G A P P P G G G P D PPG GG SGP PPG+
Sbjct: 457 P--IGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGI 514
Query: 327 VYPCG 331
P G
Sbjct: 515 PGPKG 519
Score = 77.8 bits (190), Expect = 2e-14
Identities = 98/373 (26%), Positives = 123/373 (32%), Gaps = 99/373 (26%)
Query: 20 PPPAPPSTGRKQ-----------GKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
PP PP + Q K GL M K G Y HL ++ P
Sbjct: 41 PPQMPPQIPQYQPLGQQVPHMPLAKDGLAMG----KEMPHLQYGKEYPHLPQYMKEIQP- 95
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
AP++G A P G +P R + G G+ P
Sbjct: 96 ---------------APRMGKEAVPKKGKEIPLASLRGEQGPRGEPGP------------ 128
Query: 129 LRRQPPPFPPNPMG---PAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQM--- 182
+ PP PP G P P GYP G P P +P G++
Sbjct: 129 ---RGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMP-GKPGAMGMPGAKGEIGQK 184
Query: 183 -------MPGPVGGFGPMISPTMGQP----------PRAELGP-----------PSLSQR 214
+PGP G GP P +G+P P+ + GP P +
Sbjct: 185 GEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKG 244
Query: 215 FAQPGAP--FGPSPLQRP--GQGLPSL-PPNTSPFPGPD-----PGFPGPGGEDGGKPLN 264
F PGAP GP + P GLP + P + FPGP PG PG G G P+
Sbjct: 245 FGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQG--PIG 302
Query: 265 PPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRG----GGTPDANSLAPPGKAG--GGS 318
P P P G P QP FP +G G P + PG G G
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDR 362
Query: 319 GPQPPPGLVYPCG 331
G PG + P G
Sbjct: 363 GMGGVPGALGPRG 375
Score = 68.2 bits (165), Expect = 1e-11
Identities = 85/269 (31%), Positives = 100/269 (37%), Gaps = 60/269 (22%)
Query: 88 GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNM 147
GV P G P G + G G++ G G P+ P PP P G
Sbjct: 156 GVGKPGMPGMPGKPGAMGMPGAK-GEI------GQKGEIGPMGIPGPQGPPGPHGLPGIG 208
Query: 148 PPQGPGYP----PPGNMNFPSQPFNQPL-----GQNFSPPSGQMMPGPVGGF---GPMIS 195
P GPG P P G+ P Q L + F P + GP G GP+
Sbjct: 209 KPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGL 268
Query: 196 PTMGQP-------PRAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLP----PNTSP 243
P +G+P P+ LG P PG P P+ PG QG P +P P
Sbjct: 269 PGVGKPGVTGFPGPQGPLGKP------GAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDG 322
Query: 244 FPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRG-GGT 302
PG PGFPG GE G L P P P G +P FP RG GG
Sbjct: 323 IPG-QPGFPGGKGEQGLPGLPGP-----PGLPGIG---------KPGFPGPKGDRGMGGV 367
Query: 303 PDANSLAPPGKAG-----GGSGPQPPPGL 326
P A L P G+ G G GP PGL
Sbjct: 368 PGA--LGPRGEKGPIGAPGIGGPPGEPGL 394
Score = 60.1 bits (144), Expect = 4e-09
Identities = 108/405 (26%), Positives = 134/405 (33%), Gaps = 71/405 (17%)
Query: 3 ASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGL--QMKSPEKKRRKSNTQGPAYSHLTE 60
A P P G G PP P G K G+ G+ Q P K + P L
Sbjct: 291 APGEPGPQGPIGVPGVQGPPGIPGIG-KPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPG 349
Query: 61 FAPP--PTPMVDHLVASNPF-------EDDFGAPKVG--VAAPPFLGSPVPFG------- 102
P P P D + P + GAP +G P G P P G
Sbjct: 350 IGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGF 409
Query: 103 -GFRVQGGMAG-QVPPGYSTGGG-----GGPQPLRRQPPPFP---PNPMGPAFNMPPQG- 151
G + +GG+ G Q PPG G G P L PP P P+GP +G
Sbjct: 410 PGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGV 469
Query: 152 ---PGYP----PPGNMNFPS-QPFNQPLG-QNFSPPSGQMMPGPVGGFGPMISPTMGQPP 202
PG P P G P Q P G PSG + GP G GP P + PP
Sbjct: 470 PGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPI--GPPGIPGPKGEPGLPGPP 527
Query: 203 RAE-LGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGK 261
+G P ++ PG P P +PG P PG PGP G
Sbjct: 528 GFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGP-------------PGPPGPPGPPAVM 574
Query: 262 PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQ 321
P PP PQ + ++G + PP++ G G + P + P
Sbjct: 575 PPTPP-----PQGEYLPDMGLGIDGVK---PPHAYGAKKGKNGGPAYEMPAFTAELTAPF 626
Query: 322 PPPGLVYPCGAC----RSEVNDDQDAILCEASCQKWF--HRECTG 360
PP G R N CE +F H C G
Sbjct: 627 PPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKG 671
Score = 46.6 bits (109), Expect = 4e-05
Identities = 67/223 (30%), Positives = 85/223 (38%), Gaps = 44/223 (19%)
Query: 125 GPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMP 184
G +PL PP PP MPPQ P Y P G Q + PL ++ +M
Sbjct: 32 GIKPL---PPQIPPQ-------MPPQIPQYQPLGQ-----QVPHMPLAKDGLAMGKEMPH 76
Query: 185 GPVGGFGPMI---------SPTMGQPPRAELGP--PSLSQRFAQ-----PGAPFGPSPLQ 228
G P + +P MG+ + G P S R Q PG P P
Sbjct: 77 LQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPG 136
Query: 229 RPGQGLPSL--PPNTSPFPG-PDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVN 285
PG G+P + P +PG PG PG G+ G + P A Q+ G +
Sbjct: 137 LPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGM-PGAKGEIGQKGEIG--PMGIP 193
Query: 286 GNQPSFPPNSSGRGG-GTPDANSLAPPGKAG--GGSGPQPPPG 325
G P PP G G G P L PG+ G G GP+ PG
Sbjct: 194 G--PQGPPGPHGLPGIGKPGGPGL--PGQPGPKGDRGPKGLPG 232
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 84.7 bits (208), Expect = 1e-16
Identities = 110/364 (30%), Positives = 128/364 (35%), Gaps = 66/364 (18%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P L G GP PP P G+ G P+ + QGP P P
Sbjct: 1082 PIGLPGRPGPQGPPGPAGEKGAPGEKG-----PQGPAGRDGVQGPV-----GLPGPAGP- 1130
Query: 69 VDHLVASNPFED----DFGAP----------KVGVAAPPFLGSPVPFGGF---------R 105
A +P ED + G P + G PP L PV G R
Sbjct: 1131 -----AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPR 1185
Query: 106 VQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP----PGNMN 161
Q GM GQ + G G P P+ Q P PP G ++ P GP PP P N
Sbjct: 1186 GQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN 1245
Query: 162 FPSQPFNQPLGQNFSPPSGQM-MPGPVGGFGPMISPTMGQP-----PRAELGPPSLSQRF 215
P P G+ PG G GP +G P + E GPP +
Sbjct: 1246 GADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1305
Query: 216 AQPGAPFGPSPLQRPGQ-GLPSLP-PNTSPFPGPDPGFPGPGGEDG--GKPLNP-PASTA 270
G P P PG G P P P P P G G GEDG G+P P P+ A
Sbjct: 1306 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA 1365
Query: 271 FPQEP--HSGSP-AAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLV 327
P P G P AA G Q G G +A + PPGK G GPQ P G
Sbjct: 1366 GPPGPPGKRGPPGAAGAEGRQ--------GEKGAKGEAGAEGPPGKT-GPVGPQGPAGKP 1416
Query: 328 YPCG 331
P G
Sbjct: 1417 GPEG 1420
Score = 76.6 bits (187), Expect = 4e-14
Identities = 98/347 (28%), Positives = 121/347 (34%), Gaps = 49/347 (14%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKS--PEKKRRKSNTQGPAYSHLTEFAPPPT 66
P+ +G GP P P ++GK G+ P ++ K +T P +
Sbjct: 824 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGAN------- 876
Query: 67 PMVDHLVASNPFEDDFGAPKV-GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
+ GA V G P P G R G G+ P ++GG G
Sbjct: 877 -------------GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 923
Query: 126 PQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPG 185
P P + P P P+G F P PG PPG P P Q F +G PG
Sbjct: 924 PGPPGERGPQGPQGPVG--FPGPKGPPG--PPGKDGLPGHP-GQRGETGFQGKTGP--PG 976
Query: 186 PVGGFGPMISPTMGQPP---RAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSL--PP 239
P G GP PT P R GPP PGA PG QG+ P
Sbjct: 977 PGGVVGPQ-GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 1035
Query: 240 NTSPFPGPDPGFPG----PGGEDGGKPLNPPASTAFPQEPHSGSPAAAV---NGNQPSFP 292
FPG + G PG PG + G P PP P E S A + P P
Sbjct: 1036 GLRGFPG-ERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1094
Query: 293 PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVND 339
P +G G + P G+ G Q P GL P G S D
Sbjct: 1095 PGPAGEKGAPGEKGPQGPAGR----DGVQGPVGLPGPAGPAGSPGED 1137
Score = 74.3 bits (181), Expect = 2e-13
Identities = 109/391 (27%), Positives = 127/391 (32%), Gaps = 79/391 (20%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTG------RKQGKAGLQMKS-PEKKRRKSNTQGPA---- 54
P P G GP PP PP ++G+ G Q K+ P QGP
Sbjct: 932 PQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETG 991
Query: 55 -YSHLTEFAPPPTPMVDHLVASNPFEDDFGAP-------KVGVAA----PPFLGSPVPFG 102
PP P L + E G P K G A P G P G
Sbjct: 992 PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG 1051
Query: 103 GFRVQGGMAGQVPPG-------YSTGGGGGPQPLRRQP----PPFPPNPMGPAFNMPPQG 151
++GG Q PPG + G GP L +P PP P G PQG
Sbjct: 1052 APGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1111
Query: 152 P----GYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELG 207
P G P + P+ P P G+ PG G G PP G
Sbjct: 1112 PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE--PGQKGSKG---DKGENGPP----G 1162
Query: 208 PPSLSQRFAQPGAPFG---PSPLQRPGQGLPSLPPNTSPFPGPD-----PGFPGPGGEDG 259
PP L PG G P P + G FPGP G PGP GE G
Sbjct: 1163 PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKG 1222
Query: 260 GK----PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGT------PDANSLA 309
P+ PP P P + P PP S G GG +A +
Sbjct: 1223 ENGDVGPMGPPG------PPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1276
Query: 310 PPGKAG--------GGSGPQPPPGLVYPCGA 332
PPG+AG G G PPG P GA
Sbjct: 1277 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGA 1307
Score = 71.6 bits (174), Expect = 1e-12
Identities = 98/360 (27%), Positives = 115/360 (31%), Gaps = 77/360 (21%)
Query: 7 PPPDKLEGGG-GPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP +K E G GP PP PP QG G QGP S
Sbjct: 1217 PPGEKGENGDVGPMGPPGPPGPRGPQGPNG-----------ADGPQGPPGS--------- 1256
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
V S + G P G A P GG + + G G+ P + G G
Sbjct: 1257 -------VGSVGGVGEKGEP--GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA 1307
Query: 126 PQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPG 185
P P P P+G F P PG P P + + P PG
Sbjct: 1308 KGPPGDDGPKGNPGPVG--FPGDPGPPGEPGPAGQDGVGGDKGED-----GDPGQPGPPG 1360
Query: 186 PVGGFGPMISPTMGQPPRA--------ELGPPSLSQRFAQPG--APFGP-SPLQRPGQGL 234
P G GP P PP A E G + PG P GP P +PG
Sbjct: 1361 PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG--- 1417
Query: 235 PSLPPNTSPFPGP--DPGFPGPGGEDGGK-PLNPPASTAFPQEPHS-------------G 278
P PGP + G PG G+DG P+ PP +P S G
Sbjct: 1418 ---PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1474
Query: 279 SPAAAVNGNQPSFP-----PNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGLVYPCG 331
P P P + G GG A L PPG G G GP+ G P G
Sbjct: 1475 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG 1534
Score = 64.3 bits (155), Expect = 2e-10
Identities = 92/361 (25%), Positives = 111/361 (30%), Gaps = 65/361 (18%)
Query: 1 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRR----KSNTQGPAYS 56
M PP P +G G P PP + G G + + E ++ GP
Sbjct: 1230 MGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGE 1289
Query: 57 HLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFG--GFRVQGGMAGQV 114
+ P A P DD PK F G P P G G Q G+ G
Sbjct: 1290 RGEKGEAGPPGAAGPPGAKGPPGDD--GPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1347
Query: 115 PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-----------GYPPPGNMN-- 161
G G P P PP PP GP +G PPG
Sbjct: 1348 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1407
Query: 162 FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAP 221
P P +P P + +PGPVG G + PP +GPP L PG+
Sbjct: 1408 GPQGPAGKP-----GPEGLRGIPGPVGEQGLPGAAGQDGPP-GPMGPPGLPGLKGDPGSK 1461
Query: 222 -----------FGPSPLQ--RPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPAS 268
GP Q + +GLP SP D G PGP G PL PP
Sbjct: 1462 GEKGHPGLIGLIGPPGEQGEKGDRGLPGT--QGSPGAKGDGGIPGPAG-----PLGPPGP 1514
Query: 269 TAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVY 328
P P G G T A G G P PP ++
Sbjct: 1515 PGLPG------------------PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1556
Query: 329 P 329
P
Sbjct: 1557 P 1557
Score = 60.8 bits (146), Expect = 2e-09
Identities = 95/365 (26%), Positives = 116/365 (31%), Gaps = 53/365 (14%)
Query: 6 PPPPDKLEGGGG-PAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPP 64
PP L G G P PP + G G K P +++ Q P
Sbjct: 485 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDG--SKGPTISAQEAQAQAILQQARIALRGP 542
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGY-----S 119
P PM + P G P A G P P G VQG PG +
Sbjct: 543 PGPMG---LTGRP--GPVGGPGSS-GAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGA 596
Query: 120 TGGGGGP-QPLRRQPPPFP-----PNPMGPAFNMPPQGPGYPPP-----------GNMNF 162
GG G P +P + F P G PQGP PP G
Sbjct: 597 DGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGL 656
Query: 163 PSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPF 222
P + + L P PG G GP P P+ E GPP G P
Sbjct: 657 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPP-GPKGNMGPQGEPGPPGQQGNPGPQGLPG 715
Query: 223 GPSPLQRPGQGLPSLPPNTSPFPGPD--PGFPGPGGEDGGK----PLNPPASTAFPQEPH 276
P+ PG+ P P + PG D PG PG G+ G K P P +P P
Sbjct: 716 PQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYP-GPR 774
Query: 277 SGSPAAAVNG--------NQPSFP--PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGL 326
A V G + FP G G + + P G+ GP+ P G
Sbjct: 775 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE----DGPEGPKGR 830
Query: 327 VYPCG 331
P G
Sbjct: 831 AGPTG 835
Score = 60.8 bits (146), Expect = 2e-09
Identities = 104/402 (25%), Positives = 121/402 (30%), Gaps = 101/402 (25%)
Query: 1 MAASAPPPPDKLEGGGGPA------PPPAPPSTGRKQGKAGLQ----------MKSPEKK 44
M P P +G GP P PP QGK GL E +
Sbjct: 693 MGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQ 752
Query: 45 RRKSNTQGPAYSHLTEFAPPPTPM-----VDHLVASNPFEDDFGAPKVGVAAPPFLGSPV 99
+ GP P P + V L S + + G P F G
Sbjct: 753 SGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDG-------FPGFKGDM- 804
Query: 100 PFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQG----PGYP 155
G + G GQ+ P G G P R P P P G A G PGYP
Sbjct: 805 ---GLKGDRGEVGQIGP---RGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 858
Query: 156 ----PPGNMNFPSQPFNQPLGQNFSPPSGQM--MPGPVGGFGPMISPTMGQPPRAELGPP 209
P G+ FP P G N + + PGP G GP PR G
Sbjct: 859 GRQGPKGSTGFPGFP-----GANGEKGARGVAGKPGPRGQRGP-------TGPRGSRGAR 906
Query: 210 SLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPD-----------PGFPGPGGED 258
+ + G G P PG+ P P FPGP PG PG GE
Sbjct: 907 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET 966
Query: 259 G--GKPLNP-PASTAFPQEPHSGSPAAAVNGNQ-PSFPPNSSGRGGGTPDANSLAPPGKA 314
G GK P P PQ P + G+ P PP G G + PG
Sbjct: 967 GFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ 1026
Query: 315 G-----------------------------GGSGPQPPPGLV 327
G GG GPQ PPG V
Sbjct: 1027 GISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV 1068
Score = 59.3 bits (142), Expect = 6e-09
Identities = 108/378 (28%), Positives = 120/378 (31%), Gaps = 86/378 (22%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
G G P P +G GL +K R +GP PP P D +
Sbjct: 595 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHR--GERGPQ-------GPPGPPGDDGMR 645
Query: 74 ASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAG-QVPPGY--STGGGGGPQPLR 130
+ G P G A P L P G Q GMAG PPG + G G P P
Sbjct: 646 GEDGEIGPRGLP--GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 703
Query: 131 RQPPPFP---PNPMGPAFNMPPQGPGYPP-----PGNMNFPSQPFNQPLGQN-----FSP 177
+Q P P P P GP +GP P PG P P + GQ+ P
Sbjct: 704 QQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE--GQSGEKGALGP 761
Query: 178 PSGQM---MPGPVGGFG-------------------PMISPTMGQP----------PRAE 205
P Q PGP G G P MG PR E
Sbjct: 762 PGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE 821
Query: 206 LGPPSLSQRFAQPGAPFGPSPLQRPGQ----GLPSLPPNTSPFPGPD-PGFPGPGGEDG- 259
GP R G P G+ GLP P P PGFPG GE G
Sbjct: 822 DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA 881
Query: 260 ----GKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG 315
GKP P P P A P+ P G GG PPG G
Sbjct: 882 RGVAGKP--GPRGQRGPTGPRGSRGARG-----PTGKPGPKGTSGGD------GPPGPPG 928
Query: 316 --GGSGPQPPPGLVYPCG 331
G GPQ P G P G
Sbjct: 929 ERGPQGPQGPVGFPGPKG 946
Score = 58.5 bits (140), Expect = 1e-08
Identities = 67/220 (30%), Positives = 75/220 (34%), Gaps = 32/220 (14%)
Query: 137 PPNPMGPAFNMPP---QGPGYPP--PGNMNFPSQPFNQPLGQNFSPPSGQMMPGPV---- 187
PP P GPA M P QGP PP PG+ P +P P P G M+ P
Sbjct: 455 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP-GLPGADGLPGPPGTMLMLPFRYGG 513
Query: 188 -GGFGPMISPTMGQPP----------RAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPS 236
G GP IS Q R GP L+ R G P G P
Sbjct: 514 DGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ 573
Query: 237 LPPNTSPFPGP--DPGFPGPGGEDGGK--PLNPPAS-----TAFPQEPHSGSPAAAVNGN 287
P PGP PG G G DGG+ P P A P P
Sbjct: 574 GPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ 633
Query: 288 QPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
P PP G G + PG+AG G GP+ PG
Sbjct: 634 GPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPG 673
Score = 44.3 bits (103), Expect = 2e-04
Identities = 45/159 (28%), Positives = 56/159 (35%), Gaps = 31/159 (19%)
Query: 180 GQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPP 239
G ++ GP G GP +GPP L PG P P RPG
Sbjct: 449 GMLVEGPPGPAGPA----------GIMGPPGLQGPTGPPGDPGDRGPPGRPG-------- 490
Query: 240 NTSPFPGPDPGFPGPGG-------EDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFP 292
PG D G PGP G GG P +A + + A + P P
Sbjct: 491 ----LPGAD-GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGP 545
Query: 293 PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
+GR G S G++ G GPQ P G+ P G
Sbjct: 546 MGLTGRPGPVGGPGSSGAKGES-GDPGPQGPRGVQGPPG 583
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 84.7 bits (208), Expect = 1e-16
Identities = 110/364 (30%), Positives = 128/364 (35%), Gaps = 66/364 (18%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P L G GP PP P G+ G P+ + QGP P P
Sbjct: 1031 PIGLPGRPGPQGPPGPAGEKGAPGEKG-----PQGPAGRDGVQGPV-----GLPGPAGP- 1079
Query: 69 VDHLVASNPFED----DFGAP----------KVGVAAPPFLGSPVPFGGF---------R 105
A +P ED + G P + G PP L PV G R
Sbjct: 1080 -----AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPR 1134
Query: 106 VQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP----PGNMN 161
Q GM GQ + G G P P+ Q P PP G ++ P GP PP P N
Sbjct: 1135 GQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN 1194
Query: 162 FPSQPFNQPLGQNFSPPSGQM-MPGPVGGFGPMISPTMGQP-----PRAELGPPSLSQRF 215
P P G+ PG G GP +G P + E GPP +
Sbjct: 1195 GADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1254
Query: 216 AQPGAPFGPSPLQRPGQ-GLPSLP-PNTSPFPGPDPGFPGPGGEDG--GKPLNP-PASTA 270
G P P PG G P P P P P G G GEDG G+P P P+ A
Sbjct: 1255 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA 1314
Query: 271 FPQEP--HSGSP-AAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLV 327
P P G P AA G Q G G +A + PPGK G GPQ P G
Sbjct: 1315 GPPGPPGKRGPPGAAGAEGRQ--------GEKGAKGEAGAEGPPGKT-GPVGPQGPAGKP 1365
Query: 328 YPCG 331
P G
Sbjct: 1366 GPEG 1369
Score = 76.6 bits (187), Expect = 4e-14
Identities = 98/347 (28%), Positives = 121/347 (34%), Gaps = 49/347 (14%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKS--PEKKRRKSNTQGPAYSHLTEFAPPPT 66
P+ +G GP P P ++GK G+ P ++ K +T P +
Sbjct: 773 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGAN------- 825
Query: 67 PMVDHLVASNPFEDDFGAPKV-GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
+ GA V G P P G R G G+ P ++GG G
Sbjct: 826 -------------GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 872
Query: 126 PQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPG 185
P P + P P P+G F P PG PPG P P Q F +G PG
Sbjct: 873 PGPPGERGPQGPQGPVG--FPGPKGPPG--PPGKDGLPGHP-GQRGETGFQGKTGP--PG 925
Query: 186 PVGGFGPMISPTMGQPP---RAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSL--PP 239
P G GP PT P R GPP PGA PG QG+ P
Sbjct: 926 PGGVVGPQ-GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 984
Query: 240 NTSPFPGPDPGFPG----PGGEDGGKPLNPPASTAFPQEPHSGSPAAAV---NGNQPSFP 292
FPG + G PG PG + G P PP P E S A + P P
Sbjct: 985 GLRGFPG-ERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1043
Query: 293 PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVND 339
P +G G + P G+ G Q P GL P G S D
Sbjct: 1044 PGPAGEKGAPGEKGPQGPAGR----DGVQGPVGLPGPAGPAGSPGED 1086
Score = 74.3 bits (181), Expect = 2e-13
Identities = 109/391 (27%), Positives = 127/391 (32%), Gaps = 79/391 (20%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTG------RKQGKAGLQMKS-PEKKRRKSNTQGPA---- 54
P P G GP PP PP ++G+ G Q K+ P QGP
Sbjct: 881 PQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETG 940
Query: 55 -YSHLTEFAPPPTPMVDHLVASNPFEDDFGAP-------KVGVAA----PPFLGSPVPFG 102
PP P L + E G P K G A P G P G
Sbjct: 941 PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG 1000
Query: 103 GFRVQGGMAGQVPPG-------YSTGGGGGPQPLRRQP----PPFPPNPMGPAFNMPPQG 151
++GG Q PPG + G GP L +P PP P G PQG
Sbjct: 1001 APGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1060
Query: 152 P----GYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELG 207
P G P + P+ P P G+ PG G G PP G
Sbjct: 1061 PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE--PGQKGSKG---DKGENGPP----G 1111
Query: 208 PPSLSQRFAQPGAPFG---PSPLQRPGQGLPSLPPNTSPFPGPD-----PGFPGPGGEDG 259
PP L PG G P P + G FPGP G PGP GE G
Sbjct: 1112 PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKG 1171
Query: 260 GK----PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGT------PDANSLA 309
P+ PP P P + P PP S G GG +A +
Sbjct: 1172 ENGDVGPMGPPG------PPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1225
Query: 310 PPGKAG--------GGSGPQPPPGLVYPCGA 332
PPG+AG G G PPG P GA
Sbjct: 1226 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGA 1256
Score = 71.6 bits (174), Expect = 1e-12
Identities = 98/360 (27%), Positives = 115/360 (31%), Gaps = 77/360 (21%)
Query: 7 PPPDKLEGGG-GPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP +K E G GP PP PP QG G QGP S
Sbjct: 1166 PPGEKGENGDVGPMGPPGPPGPRGPQGPNG-----------ADGPQGPPGS--------- 1205
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
V S + G P G A P GG + + G G+ P + G G
Sbjct: 1206 -------VGSVGGVGEKGEP--GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA 1256
Query: 126 PQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPG 185
P P P P+G F P PG P P + + P PG
Sbjct: 1257 KGPPGDDGPKGNPGPVG--FPGDPGPPGEPGPAGQDGVGGDKGED-----GDPGQPGPPG 1309
Query: 186 PVGGFGPMISPTMGQPPRA--------ELGPPSLSQRFAQPG--APFGP-SPLQRPGQGL 234
P G GP P PP A E G + PG P GP P +PG
Sbjct: 1310 PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG--- 1366
Query: 235 PSLPPNTSPFPGP--DPGFPGPGGEDGGK-PLNPPASTAFPQEPHS-------------G 278
P PGP + G PG G+DG P+ PP +P S G
Sbjct: 1367 ---PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1423
Query: 279 SPAAAVNGNQPSFP-----PNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGLVYPCG 331
P P P + G GG A L PPG G G GP+ G P G
Sbjct: 1424 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG 1483
Score = 64.3 bits (155), Expect = 2e-10
Identities = 92/361 (25%), Positives = 111/361 (30%), Gaps = 65/361 (18%)
Query: 1 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRR----KSNTQGPAYS 56
M PP P +G G P PP + G G + + E ++ GP
Sbjct: 1179 MGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGE 1238
Query: 57 HLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFG--GFRVQGGMAGQV 114
+ P A P DD PK F G P P G G Q G+ G
Sbjct: 1239 RGEKGEAGPPGAAGPPGAKGPPGDD--GPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1296
Query: 115 PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-----------GYPPPGNMN-- 161
G G P P PP PP GP +G PPG
Sbjct: 1297 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1356
Query: 162 FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAP 221
P P +P P + +PGPVG G + PP +GPP L PG+
Sbjct: 1357 GPQGPAGKP-----GPEGLRGIPGPVGEQGLPGAAGQDGPP-GPMGPPGLPGLKGDPGSK 1410
Query: 222 -----------FGPSPLQ--RPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPAS 268
GP Q + +GLP SP D G PGP G PL PP
Sbjct: 1411 GEKGHPGLIGLIGPPGEQGEKGDRGLPGT--QGSPGAKGDGGIPGPAG-----PLGPPGP 1463
Query: 269 TAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVY 328
P P G G T A G G P PP ++
Sbjct: 1464 PGLPG------------------PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1505
Query: 329 P 329
P
Sbjct: 1506 P 1506
Score = 60.8 bits (146), Expect = 2e-09
Identities = 95/365 (26%), Positives = 116/365 (31%), Gaps = 53/365 (14%)
Query: 6 PPPPDKLEGGGG-PAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPP 64
PP L G G P PP + G G K P +++ Q P
Sbjct: 434 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDG--SKGPTISAQEAQAQAILQQARIALRGP 491
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGY-----S 119
P PM + P G P A G P P G VQG PG +
Sbjct: 492 PGPMG---LTGRP--GPVGGPGSS-GAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGA 545
Query: 120 TGGGGGP-QPLRRQPPPFP-----PNPMGPAFNMPPQGPGYPPP-----------GNMNF 162
GG G P +P + F P G PQGP PP G
Sbjct: 546 DGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGL 605
Query: 163 PSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPF 222
P + + L P PG G GP P P+ E GPP G P
Sbjct: 606 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPP-GPKGNMGPQGEPGPPGQQGNPGPQGLPG 664
Query: 223 GPSPLQRPGQGLPSLPPNTSPFPGPD--PGFPGPGGEDGGK----PLNPPASTAFPQEPH 276
P+ PG+ P P + PG D PG PG G+ G K P P +P P
Sbjct: 665 PQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYP-GPR 723
Query: 277 SGSPAAAVNG--------NQPSFP--PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGL 326
A V G + FP G G + + P G+ GP+ P G
Sbjct: 724 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE----DGPEGPKGR 779
Query: 327 VYPCG 331
P G
Sbjct: 780 AGPTG 784
Score = 60.8 bits (146), Expect = 2e-09
Identities = 104/402 (25%), Positives = 121/402 (30%), Gaps = 101/402 (25%)
Query: 1 MAASAPPPPDKLEGGGGPA------PPPAPPSTGRKQGKAGLQ----------MKSPEKK 44
M P P +G GP P PP QGK GL E +
Sbjct: 642 MGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQ 701
Query: 45 RRKSNTQGPAYSHLTEFAPPPTPM-----VDHLVASNPFEDDFGAPKVGVAAPPFLGSPV 99
+ GP P P + V L S + + G P F G
Sbjct: 702 SGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDG-------FPGFKGDM- 753
Query: 100 PFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQG----PGYP 155
G + G GQ+ P G G P R P P P G A G PGYP
Sbjct: 754 ---GLKGDRGEVGQIGP---RGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 807
Query: 156 ----PPGNMNFPSQPFNQPLGQNFSPPSGQM--MPGPVGGFGPMISPTMGQPPRAELGPP 209
P G+ FP P G N + + PGP G GP PR G
Sbjct: 808 GRQGPKGSTGFPGFP-----GANGEKGARGVAGKPGPRGQRGP-------TGPRGSRGAR 855
Query: 210 SLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPD-----------PGFPGPGGED 258
+ + G G P PG+ P P FPGP PG PG GE
Sbjct: 856 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET 915
Query: 259 G--GKPLNP-PASTAFPQEPHSGSPAAAVNGNQ-PSFPPNSSGRGGGTPDANSLAPPGKA 314
G GK P P PQ P + G+ P PP G G + PG
Sbjct: 916 GFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ 975
Query: 315 G-----------------------------GGSGPQPPPGLV 327
G GG GPQ PPG V
Sbjct: 976 GISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV 1017
Score = 59.3 bits (142), Expect = 6e-09
Identities = 108/378 (28%), Positives = 120/378 (31%), Gaps = 86/378 (22%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
G G P P +G GL +K R +GP PP P D +
Sbjct: 544 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHR--GERGPQ-------GPPGPPGDDGMR 594
Query: 74 ASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAG-QVPPGY--STGGGGGPQPLR 130
+ G P G A P L P G Q GMAG PPG + G G P P
Sbjct: 595 GEDGEIGPRGLP--GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 652
Query: 131 RQPPPFP---PNPMGPAFNMPPQGPGYPP-----PGNMNFPSQPFNQPLGQN-----FSP 177
+Q P P P P GP +GP P PG P P + GQ+ P
Sbjct: 653 QQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE--GQSGEKGALGP 710
Query: 178 PSGQM---MPGPVGGFG-------------------PMISPTMGQP----------PRAE 205
P Q PGP G G P MG PR E
Sbjct: 711 PGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE 770
Query: 206 LGPPSLSQRFAQPGAPFGPSPLQRPGQ----GLPSLPPNTSPFPGPD-PGFPGPGGEDG- 259
GP R G P G+ GLP P P PGFPG GE G
Sbjct: 771 DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA 830
Query: 260 ----GKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG 315
GKP P P P A P+ P G GG PPG G
Sbjct: 831 RGVAGKP--GPRGQRGPTGPRGSRGARG-----PTGKPGPKGTSGGD------GPPGPPG 877
Query: 316 --GGSGPQPPPGLVYPCG 331
G GPQ P G P G
Sbjct: 878 ERGPQGPQGPVGFPGPKG 895
Score = 58.5 bits (140), Expect = 1e-08
Identities = 67/220 (30%), Positives = 75/220 (34%), Gaps = 32/220 (14%)
Query: 137 PPNPMGPAFNMPP---QGPGYPP--PGNMNFPSQPFNQPLGQNFSPPSGQMMPGPV---- 187
PP P GPA M P QGP PP PG+ P +P P P G M+ P
Sbjct: 404 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP-GLPGADGLPGPPGTMLMLPFRYGG 462
Query: 188 -GGFGPMISPTMGQPP----------RAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPS 236
G GP IS Q R GP L+ R G P G P
Sbjct: 463 DGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ 522
Query: 237 LPPNTSPFPGP--DPGFPGPGGEDGGK--PLNPPAS-----TAFPQEPHSGSPAAAVNGN 287
P PGP PG G G DGG+ P P A P P
Sbjct: 523 GPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ 582
Query: 288 QPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
P PP G G + PG+AG G GP+ PG
Sbjct: 583 GPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPG 622
Score = 44.3 bits (103), Expect = 2e-04
Identities = 45/159 (28%), Positives = 56/159 (35%), Gaps = 31/159 (19%)
Query: 180 GQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPP 239
G ++ GP G GP +GPP L PG P P RPG
Sbjct: 398 GMLVEGPPGPAGPA----------GIMGPPGLQGPTGPPGDPGDRGPPGRPG-------- 439
Query: 240 NTSPFPGPDPGFPGPGG-------EDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFP 292
PG D G PGP G GG P +A + + A + P P
Sbjct: 440 ----LPGAD-GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGP 494
Query: 293 PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
+GR G S G++ G GPQ P G+ P G
Sbjct: 495 MGLTGRPGPVGGPGSSGAKGES-GDPGPQGPRGVQGPPG 532
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 84.7 bits (208), Expect = 1e-16
Identities = 110/364 (30%), Positives = 128/364 (35%), Gaps = 66/364 (18%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P L G GP PP P G+ G P+ + QGP P P
Sbjct: 1070 PIGLPGRPGPQGPPGPAGEKGAPGEKG-----PQGPAGRDGVQGPV-----GLPGPAGP- 1118
Query: 69 VDHLVASNPFED----DFGAP----------KVGVAAPPFLGSPVPFGGF---------R 105
A +P ED + G P + G PP L PV G R
Sbjct: 1119 -----AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPR 1173
Query: 106 VQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP----PGNMN 161
Q GM GQ + G G P P+ Q P PP G ++ P GP PP P N
Sbjct: 1174 GQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN 1233
Query: 162 FPSQPFNQPLGQNFSPPSGQM-MPGPVGGFGPMISPTMGQP-----PRAELGPPSLSQRF 215
P P G+ PG G GP +G P + E GPP +
Sbjct: 1234 GADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1293
Query: 216 AQPGAPFGPSPLQRPGQ-GLPSLP-PNTSPFPGPDPGFPGPGGEDG--GKPLNP-PASTA 270
G P P PG G P P P P P G G GEDG G+P P P+ A
Sbjct: 1294 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA 1353
Query: 271 FPQEP--HSGSP-AAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLV 327
P P G P AA G Q G G +A + PPGK G GPQ P G
Sbjct: 1354 GPPGPPGKRGPPGAAGAEGRQ--------GEKGAKGEAGAEGPPGKT-GPVGPQGPAGKP 1404
Query: 328 YPCG 331
P G
Sbjct: 1405 GPEG 1408
Score = 76.6 bits (187), Expect = 4e-14
Identities = 98/347 (28%), Positives = 121/347 (34%), Gaps = 49/347 (14%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKS--PEKKRRKSNTQGPAYSHLTEFAPPPT 66
P+ +G GP P P ++GK G+ P ++ K +T P +
Sbjct: 812 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGAN------- 864
Query: 67 PMVDHLVASNPFEDDFGAPKV-GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
+ GA V G P P G R G G+ P ++GG G
Sbjct: 865 -------------GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 911
Query: 126 PQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPG 185
P P + P P P+G F P PG PPG P P Q F +G PG
Sbjct: 912 PGPPGERGPQGPQGPVG--FPGPKGPPG--PPGKDGLPGHP-GQRGETGFQGKTGP--PG 964
Query: 186 PVGGFGPMISPTMGQPP---RAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSL--PP 239
P G GP PT P R GPP PGA PG QG+ P
Sbjct: 965 PGGVVGPQ-GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 1023
Query: 240 NTSPFPGPDPGFPG----PGGEDGGKPLNPPASTAFPQEPHSGSPAAAV---NGNQPSFP 292
FPG + G PG PG + G P PP P E S A + P P
Sbjct: 1024 GLRGFPG-ERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1082
Query: 293 PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVND 339
P +G G + P G+ G Q P GL P G S D
Sbjct: 1083 PGPAGEKGAPGEKGPQGPAGR----DGVQGPVGLPGPAGPAGSPGED 1125
Score = 74.3 bits (181), Expect = 2e-13
Identities = 109/391 (27%), Positives = 127/391 (32%), Gaps = 79/391 (20%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTG------RKQGKAGLQMKS-PEKKRRKSNTQGPA---- 54
P P G GP PP PP ++G+ G Q K+ P QGP
Sbjct: 920 PQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETG 979
Query: 55 -YSHLTEFAPPPTPMVDHLVASNPFEDDFGAP-------KVGVAA----PPFLGSPVPFG 102
PP P L + E G P K G A P G P G
Sbjct: 980 PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG 1039
Query: 103 GFRVQGGMAGQVPPG-------YSTGGGGGPQPLRRQP----PPFPPNPMGPAFNMPPQG 151
++GG Q PPG + G GP L +P PP P G PQG
Sbjct: 1040 APGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1099
Query: 152 P----GYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELG 207
P G P + P+ P P G+ PG G G PP G
Sbjct: 1100 PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE--PGQKGSKG---DKGENGPP----G 1150
Query: 208 PPSLSQRFAQPGAPFG---PSPLQRPGQGLPSLPPNTSPFPGPD-----PGFPGPGGEDG 259
PP L PG G P P + G FPGP G PGP GE G
Sbjct: 1151 PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKG 1210
Query: 260 GK----PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGT------PDANSLA 309
P+ PP P P + P PP S G GG +A +
Sbjct: 1211 ENGDVGPMGPPG------PPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1264
Query: 310 PPGKAG--------GGSGPQPPPGLVYPCGA 332
PPG+AG G G PPG P GA
Sbjct: 1265 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGA 1295
Score = 71.6 bits (174), Expect = 1e-12
Identities = 98/360 (27%), Positives = 115/360 (31%), Gaps = 77/360 (21%)
Query: 7 PPPDKLEGGG-GPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP +K E G GP PP PP QG G QGP S
Sbjct: 1205 PPGEKGENGDVGPMGPPGPPGPRGPQGPNG-----------ADGPQGPPGS--------- 1244
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
V S + G P G A P GG + + G G+ P + G G
Sbjct: 1245 -------VGSVGGVGEKGEP--GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA 1295
Query: 126 PQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPG 185
P P P P+G F P PG P P + + P PG
Sbjct: 1296 KGPPGDDGPKGNPGPVG--FPGDPGPPGEPGPAGQDGVGGDKGED-----GDPGQPGPPG 1348
Query: 186 PVGGFGPMISPTMGQPPRA--------ELGPPSLSQRFAQPG--APFGP-SPLQRPGQGL 234
P G GP P PP A E G + PG P GP P +PG
Sbjct: 1349 PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG--- 1405
Query: 235 PSLPPNTSPFPGP--DPGFPGPGGEDGGK-PLNPPASTAFPQEPHS-------------G 278
P PGP + G PG G+DG P+ PP +P S G
Sbjct: 1406 ---PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1462
Query: 279 SPAAAVNGNQPSFP-----PNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGLVYPCG 331
P P P + G GG A L PPG G G GP+ G P G
Sbjct: 1463 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAG 1522
Score = 64.3 bits (155), Expect = 2e-10
Identities = 92/361 (25%), Positives = 111/361 (30%), Gaps = 65/361 (18%)
Query: 1 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRR----KSNTQGPAYS 56
M PP P +G G P PP + G G + + E ++ GP
Sbjct: 1218 MGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGE 1277
Query: 57 HLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFG--GFRVQGGMAGQV 114
+ P A P DD PK F G P P G G Q G+ G
Sbjct: 1278 RGEKGEAGPPGAAGPPGAKGPPGDD--GPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1335
Query: 115 PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-----------GYPPPGNMN-- 161
G G P P PP PP GP +G PPG
Sbjct: 1336 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1395
Query: 162 FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAP 221
P P +P P + +PGPVG G + PP +GPP L PG+
Sbjct: 1396 GPQGPAGKP-----GPEGLRGIPGPVGEQGLPGAAGQDGPP-GPMGPPGLPGLKGDPGSK 1449
Query: 222 -----------FGPSPLQ--RPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPAS 268
GP Q + +GLP SP D G PGP G PL PP
Sbjct: 1450 GEKGHPGLIGLIGPPGEQGEKGDRGLPGT--QGSPGAKGDGGIPGPAG-----PLGPPGP 1502
Query: 269 TAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVY 328
P P G G T A G G P PP ++
Sbjct: 1503 PGLPG------------------PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1544
Query: 329 P 329
P
Sbjct: 1545 P 1545
Score = 60.8 bits (146), Expect = 2e-09
Identities = 95/365 (26%), Positives = 116/365 (31%), Gaps = 53/365 (14%)
Query: 6 PPPPDKLEGGGG-PAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPP 64
PP L G G P PP + G G K P +++ Q P
Sbjct: 473 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDG--SKGPTISAQEAQAQAILQQARIALRGP 530
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGY-----S 119
P PM + P G P A G P P G VQG PG +
Sbjct: 531 PGPMG---LTGRP--GPVGGPGSS-GAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGA 584
Query: 120 TGGGGGP-QPLRRQPPPFP-----PNPMGPAFNMPPQGPGYPPP-----------GNMNF 162
GG G P +P + F P G PQGP PP G
Sbjct: 585 DGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGL 644
Query: 163 PSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPF 222
P + + L P PG G GP P P+ E GPP G P
Sbjct: 645 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPP-GPKGNMGPQGEPGPPGQQGNPGPQGLPG 703
Query: 223 GPSPLQRPGQGLPSLPPNTSPFPGPD--PGFPGPGGEDGGK----PLNPPASTAFPQEPH 276
P+ PG+ P P + PG D PG PG G+ G K P P +P P
Sbjct: 704 PQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYP-GPR 762
Query: 277 SGSPAAAVNG--------NQPSFP--PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGL 326
A V G + FP G G + + P G+ GP+ P G
Sbjct: 763 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE----DGPEGPKGR 818
Query: 327 VYPCG 331
P G
Sbjct: 819 AGPTG 823
Score = 60.8 bits (146), Expect = 2e-09
Identities = 104/402 (25%), Positives = 121/402 (30%), Gaps = 101/402 (25%)
Query: 1 MAASAPPPPDKLEGGGGPA------PPPAPPSTGRKQGKAGLQ----------MKSPEKK 44
M P P +G GP P PP QGK GL E +
Sbjct: 681 MGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQ 740
Query: 45 RRKSNTQGPAYSHLTEFAPPPTPM-----VDHLVASNPFEDDFGAPKVGVAAPPFLGSPV 99
+ GP P P + V L S + + G P F G
Sbjct: 741 SGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDG-------FPGFKGDM- 792
Query: 100 PFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQG----PGYP 155
G + G GQ+ P G G P R P P P G A G PGYP
Sbjct: 793 ---GLKGDRGEVGQIGP---RGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 846
Query: 156 ----PPGNMNFPSQPFNQPLGQNFSPPSGQM--MPGPVGGFGPMISPTMGQPPRAELGPP 209
P G+ FP P G N + + PGP G GP PR G
Sbjct: 847 GRQGPKGSTGFPGFP-----GANGEKGARGVAGKPGPRGQRGP-------TGPRGSRGAR 894
Query: 210 SLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPD-----------PGFPGPGGED 258
+ + G G P PG+ P P FPGP PG PG GE
Sbjct: 895 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET 954
Query: 259 G--GKPLNP-PASTAFPQEPHSGSPAAAVNGNQ-PSFPPNSSGRGGGTPDANSLAPPGKA 314
G GK P P PQ P + G+ P PP G G + PG
Sbjct: 955 GFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ 1014
Query: 315 G-----------------------------GGSGPQPPPGLV 327
G GG GPQ PPG V
Sbjct: 1015 GISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV 1056
Score = 59.3 bits (142), Expect = 6e-09
Identities = 108/378 (28%), Positives = 120/378 (31%), Gaps = 86/378 (22%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
G G P P +G GL +K R +GP PP P D +
Sbjct: 583 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHR--GERGPQ-------GPPGPPGDDGMR 633
Query: 74 ASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAG-QVPPGY--STGGGGGPQPLR 130
+ G P G A P L P G Q GMAG PPG + G G P P
Sbjct: 634 GEDGEIGPRGLP--GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 691
Query: 131 RQPPPFP---PNPMGPAFNMPPQGPGYPP-----PGNMNFPSQPFNQPLGQN-----FSP 177
+Q P P P P GP +GP P PG P P + GQ+ P
Sbjct: 692 QQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE--GQSGEKGALGP 749
Query: 178 PSGQM---MPGPVGGFG-------------------PMISPTMGQP----------PRAE 205
P Q PGP G G P MG PR E
Sbjct: 750 PGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE 809
Query: 206 LGPPSLSQRFAQPGAPFGPSPLQRPGQ----GLPSLPPNTSPFPGPD-PGFPGPGGEDG- 259
GP R G P G+ GLP P P PGFPG GE G
Sbjct: 810 DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA 869
Query: 260 ----GKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG 315
GKP P P P A P+ P G GG PPG G
Sbjct: 870 RGVAGKP--GPRGQRGPTGPRGSRGARG-----PTGKPGPKGTSGGD------GPPGPPG 916
Query: 316 --GGSGPQPPPGLVYPCG 331
G GPQ P G P G
Sbjct: 917 ERGPQGPQGPVGFPGPKG 934
Score = 58.5 bits (140), Expect = 1e-08
Identities = 67/220 (30%), Positives = 75/220 (34%), Gaps = 32/220 (14%)
Query: 137 PPNPMGPAFNMPP---QGPGYPP--PGNMNFPSQPFNQPLGQNFSPPSGQMMPGPV---- 187
PP P GPA M P QGP PP PG+ P +P P P G M+ P
Sbjct: 443 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP-GLPGADGLPGPPGTMLMLPFRYGG 501
Query: 188 -GGFGPMISPTMGQPP----------RAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPS 236
G GP IS Q R GP L+ R G P G P
Sbjct: 502 DGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ 561
Query: 237 LPPNTSPFPGP--DPGFPGPGGEDGGK--PLNPPAS-----TAFPQEPHSGSPAAAVNGN 287
P PGP PG G G DGG+ P P A P P
Sbjct: 562 GPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQ 621
Query: 288 QPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
P PP G G + PG+AG G GP+ PG
Sbjct: 622 GPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPG 661
Score = 44.3 bits (103), Expect = 2e-04
Identities = 45/159 (28%), Positives = 56/159 (35%), Gaps = 31/159 (19%)
Query: 180 GQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPP 239
G ++ GP G GP +GPP L PG P P RPG
Sbjct: 437 GMLVEGPPGPAGPA----------GIMGPPGLQGPTGPPGDPGDRGPPGRPG-------- 478
Query: 240 NTSPFPGPDPGFPGPGG-------EDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFP 292
PG D G PGP G GG P +A + + A + P P
Sbjct: 479 ----LPGAD-GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGP 533
Query: 293 PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
+GR G S G++ G GPQ P G+ P G
Sbjct: 534 MGLTGRPGPVGGPGSSGAKGES-GDPGPQGPRGVQGPPG 571
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 84.3 bits (207), Expect = 2e-16
Identities = 113/348 (32%), Positives = 132/348 (37%), Gaps = 56/348 (16%)
Query: 1 MAASAPPPPDK--LEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHL 58
M AP P + L G GP P PP G K+G+ G+ P + K + P
Sbjct: 191 MGYGAPGRPGERGLPGPQGPTGPSGPPGVG-KRGENGV----PGQPGIKGDRGFPG---- 241
Query: 59 TEFAP--PPTPMVDHLVASNPFE-DDFGAPKVGVAAPPFLGSPVPFGGFRVQG--GMAGQ 113
E P PP P P E G K G A P G P G + G G+AG
Sbjct: 242 -EMGPIGPPGPQ------GPPGERGPEGIGKPGAAGAP--GQPGIPGTKGLPGAPGIAGP 292
Query: 114 V-PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP----PPGNMNFPSQPFN 168
PPG+ G G + R P P P P PG P PPGNM
Sbjct: 293 PGPPGFGKPGLPGLKG-ERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMG------- 344
Query: 169 QPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQ 228
P G P S +PGP G GP P + E G P + PG P P
Sbjct: 345 -PQGPKGIPGS-HGLPGPKGETGPA-GPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKG 401
Query: 229 RPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQ 288
PG LP P P G PG PGP G G K + A P+ G+P + G +
Sbjct: 402 NPG--LPG--PKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPR----GAP--GIPGTR 451
Query: 289 -PSFPPNSSGRGGGTPDANSLAPPGKAG----GGSGPQPPPGLVYPCG 331
P PP G G D S PPG AG G +GP PPG P G
Sbjct: 452 GPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRG 499
Score = 72.4 bits (176), Expect = 7e-13
Identities = 67/212 (31%), Positives = 77/212 (36%), Gaps = 32/212 (15%)
Query: 132 QPPPFPPNPMGPAFNMPPQG----PGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPV 187
Q P PP P GP + P G PGY PG P P P P +PG
Sbjct: 59 QGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLP-GPPGPSAVGKPGVPGLPGKP 117
Query: 188 GGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPL-----QRPGQGLPSLPPNTS 242
G GP P+ ++GP L PG P P P +PGQ P+ P
Sbjct: 118 GERGP-------YGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPR 170
Query: 243 PFPGPD--PGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRG- 299
FPG PG PG G+ G P P P PS PP RG
Sbjct: 171 GFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTG------PSGPPGVGKRGE 224
Query: 300 GGTPDANSLAP----PGKAG--GGSGPQPPPG 325
G P + PG+ G G GPQ PPG
Sbjct: 225 NGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPG 256
Score = 63.5 bits (153), Expect = 3e-10
Identities = 56/165 (33%), Positives = 67/165 (40%), Gaps = 23/165 (13%)
Query: 181 QMMPGPVGGFGPMISPTMGQPP-RAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLP 238
Q PGP G GP P PP + G P L PG P GPS + +PG GLP P
Sbjct: 59 QGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPP-GPSAVGKPGVPGLPGKP 117
Query: 239 PNTSPFPGPD-----PGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFP- 292
P+ GP G PGP G G + PA + P +P P A FP
Sbjct: 118 GERGPY-GPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPR--GFPG 174
Query: 293 ----PNSSGRGGGTPDANSLAP--PGKAG-----GGSGPQPPPGL 326
P G G + AP PG+ G G +GP PPG+
Sbjct: 175 EKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGV 219
Score = 44.7 bits (104), Expect = 2e-04
Identities = 47/164 (28%), Positives = 58/164 (35%), Gaps = 23/164 (14%)
Query: 173 QNFSPPSGQMMPGP---VGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQR 229
+ + P+G P P F P + G R E G P G P P +
Sbjct: 23 ERYQMPTGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGK 82
Query: 230 PGQGLPSLPPNTSPFPGPDPGFPGPGGEDG-GKPLNPPASTAFPQEPHSGSPAAAVNGNQ 288
PG G P L +PG PGP G GKP P P +P P
Sbjct: 83 PGYGSPGLQ--------GEPGLPGPPGPSAVGKPGVP----GLPGKPGERGPYGPKGDVG 130
Query: 289 PSFPPNSSGRGG--GTPDANSLAPPGKAG-----GGSGPQPPPG 325
P+ P G G G P ++ PGK G G GP+ PG
Sbjct: 131 PAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPG 174
Score = 44.3 bits (103), Expect = 2e-04
Identities = 61/231 (26%), Positives = 79/231 (34%), Gaps = 46/231 (19%)
Query: 13 EGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHL 72
+G GPA P P ++G G K P Y P P +D
Sbjct: 361 KGETGPAGPAGYPGAKGERGSPGSDGK-------------PGY--------PGKPGLDGP 399
Query: 73 VASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQ 132
+ G P GV PP L PV G + G G+ P + G G P+
Sbjct: 400 KGNPGLPGPKGDP--GVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPI--G 455
Query: 133 PPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGP 192
PP P P P PG PPG ++ N P G PGP G G
Sbjct: 456 PPGIPGFPGSKG---DPGSPG--PPGPAGIATKGLNGPTGP----------PGPPGPRGH 500
Query: 193 MISPTMGQPPRAELGPPS---LSQRFAQPG--APFGPSPLQRPGQGLPSLP 238
P + PP GPP + + F + G +PL QG+ +P
Sbjct: 501 SGEPGLPGPP-GPPGPPGQAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMP 550
Score = 42.7 bits (99), Expect = 6e-04
Identities = 38/133 (28%), Positives = 43/133 (32%), Gaps = 8/133 (6%)
Query: 200 QPPRAELGP-PSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGED 258
Q P GP P+ +F P R QG P P P G PGP G
Sbjct: 26 QMPTGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGP-----RGHPGPSGPP 80
Query: 259 GGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGS 318
G P P P P+A P P RG P + P G
Sbjct: 81 GKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGD--VGPAGLPGPR 138
Query: 319 GPQPPPGLVYPCG 331
GP PPG+ P G
Sbjct: 139 GPPGPPGIPGPAG 151
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 83.6 bits (205), Expect = 3e-16
Identities = 103/338 (30%), Positives = 117/338 (34%), Gaps = 75/338 (22%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PPPP L G G P PPP P AG+ P G PPP
Sbjct: 909 PPPPPPLPGAGIPPPPPLP--------GAGILPLPP--------LPGAG-------IPPP 945
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQ-VPPGYSTGGGG 124
P+ + P P G+ PP P+P G + G +PP G G
Sbjct: 946 PPLPGAAIPPPP-----PLPGAGIPLPP----PLPGAGIPPPPPLPGAGIPPPPPLPGAG 996
Query: 125 GPQPLRRQPPPFPPNPMGPAFNMPP----QGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
P P PP P P +PP G G PPP + P PL P +G
Sbjct: 997 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL-----PGAG 1051
Query: 181 QMMPGPVGGFG---PMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSL 237
P P+ G G P P G PP PP L PGA P P PG G+P
Sbjct: 1052 IPPPPPLPGAGIPPPPPLPGAGIPP-----PPPL------PGAGIPPPP-PLPGAGIPPP 1099
Query: 238 PPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTA-FPQEPHSGSPAAAVNGNQP----SFP 292
PP P P PG G P PP A P P P A + P P
Sbjct: 1100 PPLPGVGIPPPPPLPG-----AGIPPPPPLPGAGIPPPP--PLPGAGIPPPPPLPRVGIP 1152
Query: 293 PNSSGRGGGTPDANSLAPPGKAGGGSGPQPP-PGLVYP 329
P G G P PP G G P PP PG+ P
Sbjct: 1153 PPPPLPGAGIP-----PPPPLPGAGIPPPPPLPGVGIP 1185
Score = 80.5 bits (197), Expect = 3e-15
Identities = 98/342 (28%), Positives = 114/342 (33%), Gaps = 69/342 (20%)
Query: 1 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTE 60
+ +A PPP L G G P PPP P AG+ P G
Sbjct: 948 LPGAAIPPPPPLPGAGIPLPPPLP--------GAGIPPPPP--------LPGAG------ 985
Query: 61 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQ-VPPGYS 119
PPP P+ + P P G+ PP P+P G + G +PP
Sbjct: 986 -IPPPPPLPGAGIPPPP-----PLPGAGIPPPP----PLPGAGIPPPPPLPGAGIPPPPP 1035
Query: 120 TGGGGGPQPLRRQPPPFPPNPMGPAFNMPP----QGPGYPPPGNMNFPSQPFNQPLGQNF 175
G G P P PP P P +PP G G PPP + P PL
Sbjct: 1036 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPL---- 1091
Query: 176 SPPSGQMMPGPVGGFG---PMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQ 232
P +G P P+ G G P P G PP PP L PGA P P PG
Sbjct: 1092 -PGAGIPPPPPLPGVGIPPPPPLPGAGIPP-----PPPL------PGAGIPPPP-PLPGA 1138
Query: 233 GLPSLPP-----NTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGN 287
G+P PP P P P G P P G PP P P +
Sbjct: 1139 GIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGI--- 1195
Query: 288 QPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYP 329
PP G G P L G + P PPPG P
Sbjct: 1196 ----PPPPPLPGAGIPPPPPLPGMGIPPAPAPPLPPPGTGIP 1233
Score = 75.1 bits (183), Expect = 1e-13
Identities = 99/346 (28%), Positives = 119/346 (34%), Gaps = 65/346 (18%)
Query: 4 SAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEF-A 62
S PPPP L G P + P S E + ++ A+ + +
Sbjct: 808 SQPPPPPSLLWSAGQGQPGSQPP----------HSISTEFQTSHEHSVSSAFKNSCNIPS 857
Query: 63 PPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVP-PGYSTG 121
PPP P E P +G+ PP P P G V + +P P G
Sbjct: 858 PPPLPCT---------ESSSSMPGLGMVPPP----PPPLPGMTVPTLPSTAIPQPPPLQG 904
Query: 122 GGGGPQPLRRQP----PPFPPNPMGPAFNMPP-QGPGYPPPGNMNFPSQPFNQPLGQNFS 176
P P P PP PP P +PP G G PPP + + P PL
Sbjct: 905 TEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPL----- 959
Query: 177 PPSGQMMPGPVGGFG---PMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQG 233
P +G +P P+ G G P P G PP PP L PGA P P PG G
Sbjct: 960 PGAGIPLPPPLPGAGIPPPPPLPGAGIPP-----PPPL------PGAGIPPPP-PLPGAG 1007
Query: 234 LPSLPPNTS-----PFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQ 288
+P PP P P P G P P G PP P P A +
Sbjct: 1008 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1067
Query: 289 P----SFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPP-PGLVYP 329
P PP G G P PP G G P PP PG+ P
Sbjct: 1068 PLPGAGIPPPPPLPGAGIP-----PPPPLPGAGIPPPPPLPGVGIP 1108
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 82.4 bits (202), Expect = 7e-16
Identities = 113/366 (30%), Positives = 131/366 (35%), Gaps = 67/366 (18%)
Query: 3 ASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKS-PEKKRRKSNTQG-PAYSHLTE 60
A P D + G GP PP P +G++G + P R +G P
Sbjct: 753 ADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAG 812
Query: 61 FAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPF----LGSPVPFGGFRVQG-----GMA 111
FA PP D + D GA G A PP G P P G G G A
Sbjct: 813 FAGPPG--ADGQPGAKGEPGDAGAK--GDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSA 868
Query: 112 GQVPPGYS-----TGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP--PGNMNFPS 164
G PPG + G G P P PP PP P G P+G P PG + P
Sbjct: 869 G--PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPG 926
Query: 165 QPFNQPLGQNFSP----PSGQM-MPGPVGGFGPMISPTMGQP-PRAELGPPSLSQRFAQP 218
P P G+ SP P+G PGP G G +G P R E G P L +P
Sbjct: 927 PP--GPAGEKGSPGADGPAGAPGTPGPQGIAGQR--GVVGLPGQRGERGFPGLPGPSGEP 982
Query: 219 G--------------APFGPSPLQRP-GQGLPSLPPNTSPFPGPD--PGFPGPGGEDGGK 261
G P GP L P G+ P PG D PG G GE G
Sbjct: 983 GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETG-- 1040
Query: 262 PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSG 319
P PP + P G+P P P SG G T A P G G G +G
Sbjct: 1041 PAGPPGAPGAP-----GAPG-------PVGPAGKSGDRGETGPAGPAGPVGPVGARGPAG 1088
Query: 320 PQPPPG 325
PQ P G
Sbjct: 1089 PQGPRG 1094
Score = 80.5 bits (197), Expect = 3e-15
Identities = 116/396 (29%), Positives = 138/396 (34%), Gaps = 74/396 (18%)
Query: 2 AASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEF 61
A A PP PA PP P +G+AG P+ R QG +
Sbjct: 327 ATGAAGPPGPTG----PAGPPGFPGAVGAKGEAG-----PQGPRGSEGPQG-----VRGE 372
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQ-VPPG--- 117
PP P A NP D K AP G+P F G R G G PPG
Sbjct: 373 PGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP-GFPGARGPSGPQGPGGPPGPKG 431
Query: 118 -----------YSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-GYP-PPGNMNFP- 163
TG G P P+ Q PP P G GP G P PPG P
Sbjct: 432 NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPG 491
Query: 164 SQPF---------NQPLGQNFSP-PSG-QMMPGPVGGFG----PMISPTMGQP----PRA 204
S+ F P G+ SP P+G + PG G G P G P P
Sbjct: 492 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 551
Query: 205 ELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLPPNTSPFPGP--------DPGFPGPG 255
+ GPP + + +PG P P + G G P P + PG PG GP
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPG-PKGAAGEPGKAGERGVPGPPGAVGPA 610
Query: 256 GEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQ----PSFPPNSSGRGGGTPDANSLAPP 311
G+DG P A P A G Q P+ PP +G+ G L P
Sbjct: 611 GKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP 670
Query: 312 GKAG--------GGSGPQPPPGLVYPCGACRSEVND 339
G +G G G Q PPG P GA + ND
Sbjct: 671 GPSGARGERGFPGERGVQGPPGPAGPRGANGAPGND 706
Score = 79.3 bits (194), Expect = 6e-15
Identities = 100/361 (27%), Positives = 117/361 (32%), Gaps = 44/361 (12%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQ-MKSPEKKRRKSNTQGPAYSHLTEFAPPPTP 67
P K G P PP A G K G+AG Q P + QGPA S F P P
Sbjct: 592 PGKAGERGVPGPPGAVGPAG-KDGEAGAQGPPGPAGPAGERGEQGPAGS--PGFQGLPGP 648
Query: 68 MVDHLVASNPFED----DFGAP-------------KVGVAAPPFLGSPVPFGGFRVQGGM 110
A P E D GAP + GV PP P G G
Sbjct: 649 AGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGA 708
Query: 111 AGQVPPGYSTGGGGGP----QPLRRQPPPFPPNPMGPAFNMPPQGP-GYPPPGNMNFPSQ 165
G + G G P P R P P G + P+G G P + +
Sbjct: 709 KGDAGAPGAPGSQGAPGLQGMPGERGAAGLP-GPKGDRGDAGPKGADGSPGKDGVRGLTG 767
Query: 166 PFNQPLGQNFSPPSGQMMP-GPVGGFGPMISP-TMGQP----PRAELGPPSLSQRFAQPG 219
P P G+ P GP G G +P G+P P GPP QPG
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGAD---GQPG 824
Query: 220 APFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGS 279
A P G P P + PGP PG + PP +T FP
Sbjct: 825 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Query: 280 PAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPP--------PGLVYPCG 331
P P PP +G+ GG P G+ G P PP PG P G
Sbjct: 885 PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 944
Query: 332 A 332
A
Sbjct: 945 A 945
Score = 77.0 bits (188), Expect = 3e-14
Identities = 115/392 (29%), Positives = 143/392 (36%), Gaps = 103/392 (26%)
Query: 10 DKLEGGGGPAPPPAPPSTGRKQGKAG-LQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
D +G GPA P P + + G G + + +R + GPA + + A
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGA------ 327
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
G A PP P GF G G+ P G GPQ
Sbjct: 328 ------------------TGAAGPPGPTGPAGPPGFPGAVGAKGEAGP-QGPRGSEGPQG 368
Query: 129 LRRQP-PPFPPNPMGPAFN------------------------------MPPQGPGYP-- 155
+R +P PP P GPA N PQGPG P
Sbjct: 369 VRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
Query: 156 PPGNMNFPSQPFNQ----------PLGQNFSP-PSGQM-------MPGPVGGFGP---MI 194
P GN P P ++ P+G P P+G+ PGP G GP
Sbjct: 429 PKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERG 488
Query: 195 SPTMGQPPRAE--LGPPSLSQRFAQPGAPFGP--SPLQ--RPGQ-GLPSLPPNT-SP-FP 245
P P A+ GP + PG P GP SP + RPG+ GLP T SP P
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPG-PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSP 547
Query: 246 GPD--PGFPGPGGEDGGK-PLNPPAS------TAFP-QEPHSGSPAAAVNGNQPSFPPNS 295
GPD G PGP G+DG P PP + FP + +G P A P PP +
Sbjct: 548 GPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG-PPGA 606
Query: 296 SGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
G G +A + PPG AG G G Q P G
Sbjct: 607 VGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG 638
Score = 75.5 bits (184), Expect = 8e-14
Identities = 101/380 (26%), Positives = 118/380 (31%), Gaps = 85/380 (22%)
Query: 4 SAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAP 63
+ P P G GPA P P + G+AGL P K + P T
Sbjct: 502 AGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGL----PGAKGLTGSPGSPGPDGKT---G 554
Query: 64 PPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGG 123
PP P A + G PP G P G R Q G+ G P G
Sbjct: 555 PPGP----------------AGQDGRPGPP--GPP----GARGQAGVMGFPGP---KGAA 589
Query: 124 GGPQPLRRQPPPFPPNPMGPAFN------MPPQGPGYP--------PPGNMNFPSQPFNQ 169
G P + P PP +GPA P GP P P G+ F P
Sbjct: 590 GEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 649
Query: 170 PLGQNFSPPSGQMMPGPVGGFGP--------------MISPTMGQPPRAELGPPSLSQRF 215
P Q +PG +G GP + P PR G P
Sbjct: 650 GPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAK 709
Query: 216 AQPGAPFGPSPLQRPG-QGLPSLPPNTSPFPGP--DPGFPGPGGEDG--GK--------P 262
GAP P PG QG+P + PGP D G GP G DG GK P
Sbjct: 710 GDAGAPGAPGSQGAPGLQGMPG-ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP 768
Query: 263 LNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG------- 315
+ PP P + P+ P G G A PPG G
Sbjct: 769 IGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGE 828
Query: 316 ----GGSGPQPPPGLVYPCG 331
G G PPG P G
Sbjct: 829 PGDAGAKGDAGPPGPAGPAG 848
Score = 68.6 bits (166), Expect = 1e-11
Identities = 93/299 (31%), Positives = 108/299 (36%), Gaps = 61/299 (20%)
Query: 88 GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGY---STGGGGGPQPLRRQPP---PFPPNPM 141
G+ PP G P P G + G A Q+ GY STGG P P+ P P PP
Sbjct: 139 GLPGPP--GPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAP 196
Query: 142 GP-AFNMPPQGPGYP----PPGNMNFPSQP-FNQPLGQNFSP--PSGQMMPGPVGGFGPM 193
GP F PP PG P P G P P N G+ P P + PGP G G
Sbjct: 197 GPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARG-- 254
Query: 194 ISPTMGQP----------------------PRAE------------LGPPSLSQRFAQPG 219
+ T G P P+ E +GP L +PG
Sbjct: 255 LPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPG 314
Query: 220 APFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQ----EP 275
AP G + PP + GP PGFPG G G P + PQ EP
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373
Query: 276 HSGSPAAAVN--GNQ-PSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
PA A GN P + G G A + PG A G SGPQ P G P G
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPG-ARGPSGPQGPGGPPGPKG 431
Score = 65.5 bits (158), Expect = 8e-11
Identities = 83/253 (32%), Positives = 89/253 (35%), Gaps = 42/253 (16%)
Query: 103 GFRVQGGMAGQVPPGYS--TGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQ-GPGYP---- 155
G R G AG PPG G G P P PP PP P G N PQ GY
Sbjct: 118 GPRGPRGPAG--PPGRDGIPGQPGLPGP---PGPPGPPGPPGLGGNFAPQLSYGYDEKST 172
Query: 156 ----------PPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAE 205
P G P P P Q F P G+ PG G GPM PR
Sbjct: 173 GGISVPGPMGPSGPRGLPGPP-GAPGPQGFQGPPGE--PGEPGASGPM-------GPRGP 222
Query: 206 LGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLN 264
GPP + + G P P PG QG L P T+ PG G G G DG K
Sbjct: 223 PGPPGKNGDDGEAGKPGRPGERGPPGPQGARGL-PGTAGLPGM-KGHRGFSGLDGAKGDA 280
Query: 265 PPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG-----GGSG 319
PA EP S A P P GR G A + G G G +G
Sbjct: 281 GPAGP--KGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTG 338
Query: 320 PQPPPGLVYPCGA 332
P PPG GA
Sbjct: 339 PAGPPGFPGAVGA 351
Score = 60.1 bits (144), Expect = 4e-09
Identities = 89/341 (26%), Positives = 108/341 (31%), Gaps = 37/341 (10%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQ-------MKSPEKKRRKSNTQGPAYSHL 58
PP P G G P P + GKAG + P K ++ QGP
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP----- 621
Query: 59 TEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGY 118
P P P G A PP G G V G + P G
Sbjct: 622 ----PGPAGPAGERGEQGPAGSPGFQGLPGPAGPP--GEAGKPGEQGVPGDLGAPGPSG- 674
Query: 119 STGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQ--PLGQNFS 176
+ G G P Q PP P P G N P G G+ P P +Q P Q
Sbjct: 675 ARGERGFPGERGVQGPPGPAGPRGA--NGAPGNDG--AKGDAGAPGAPGSQGAPGLQGMP 730
Query: 177 PPSGQM-MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLP 235
G +PGP G G P + G L+ PG P G P
Sbjct: 731 GERGAAGLPGPKGDRGDA-GPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGP 789
Query: 236 SLPPNTSPFPGP--DPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPP 293
+ P PG +PG PGP G G PP + P G P A + PP
Sbjct: 790 AGPTGARGAPGDRGEPGPPGPAGFAG-----PPGADGQPGA--KGEPGDA-GAKGDAGPP 841
Query: 294 NSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACR 334
+G G ++ PG G PP +P A R
Sbjct: 842 GPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR 882
Score = 52.4 bits (124), Expect = 7e-07
Identities = 50/162 (30%), Positives = 57/162 (35%), Gaps = 38/162 (23%)
Query: 185 GPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSP- 243
GP G GP + PR GPP QPG P P P PG P L N +P
Sbjct: 112 GPKGDTGP-------RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGP--PGLGGNFAPQ 162
Query: 244 --------------FPGP-----DPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAV 284
PGP G PGP G G + P P EP + P
Sbjct: 163 LSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGE--PGEPGASGPMG-- 218
Query: 285 NGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGL 326
P PP G+ G +A PG+ G GPQ GL
Sbjct: 219 ----PRGPPGPPGKNGDDGEAGKPGRPGER-GPPGPQGARGL 255
Score = 34.3 bits (77), Expect = 0.21
Identities = 46/170 (27%), Positives = 56/170 (32%), Gaps = 21/170 (12%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYS----HLTEFAPPPTPMV 69
G GPA PP P G G KS + R ++ GPA A P P
Sbjct: 1037 GETGPAGPPGAPGAPGAPGPVGPAGKSGD--RGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Query: 70 DHLVASNPFEDDFGAPK--VGVAAPPFL-GSPVPFGGFRVQGGMAGQVPPGYSTGGGGGP 126
D + + G+ PP GSP G G + PPG + G G
Sbjct: 1095 DKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPG--SAGAPGK 1152
Query: 127 QPLRRQPPPFPP----------NPMGPAFNMPPQGPGYPPPGNMNFPSQP 166
L P P P P+GP P GP PP +F P
Sbjct: 1153 DGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLP 1202
Score = 34.3 bits (77), Expect = 0.21
Identities = 41/151 (27%), Positives = 54/151 (35%), Gaps = 24/151 (15%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGP----AYSHLTEFAPPPTPMV 69
G GPA P P +G AG Q P + ++ QG + + PP P
Sbjct: 1067 GETGPAGPAGPVGPVGARGPAGPQ--GPRGDKGETGEQGDRGIKGHRGFSGLQGPPGP-- 1122
Query: 70 DHLVASNPFED--DFGAPKVGVAAPP-FLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGP 126
+P E + G PP G+P G G+ G + P G G
Sbjct: 1123 ----PGSPGEQGPSGASGPAGPRGPPGSAGAPGKDG----LNGLPGPIGPPGPRGRTGDA 1174
Query: 127 QPLRRQPPPFPPNPMGPA-----FNMPPQGP 152
P+ PP PP P GP F+ PQ P
Sbjct: 1175 GPVGPPGPPGPPGPPGPPSAGFDFSFLPQPP 1205
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 82.4 bits (202), Expect = 7e-16
Identities = 108/370 (29%), Positives = 124/370 (33%), Gaps = 57/370 (15%)
Query: 6 PPPPDKLEGGGGPAP------------PPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGP 53
PP P G GPA P PP ++G G K P+ + QGP
Sbjct: 1082 PPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPG--EKGPQGPAGRDGLQGP 1139
Query: 54 A-YSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPF-------LGSPVPFG--- 102
PP D P + K G PP +G P P G
Sbjct: 1140 VGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDK-GEQGPPGPTGPQGPIGQPGPSGADG 1198
Query: 103 --GFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNM 160
G R Q G+ GQ G G P P+ Q P PP G ++ GP PP
Sbjct: 1199 EPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPG--- 1255
Query: 161 NFPSQPFNQPLGQN-FSPPSGQMMPGPVGGFG-------PMISPTMGQP-PRAELGPPSL 211
P P P PP G PG VG G P + G P P+ E G
Sbjct: 1256 --PRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGE 1313
Query: 212 SQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGP--DPGFPGPGGEDG--------GK 261
S GA P P PG P P FPG PG PGP G+DG G+
Sbjct: 1314 S---GPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGE 1370
Query: 262 PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQ 321
P S EP P P+ P G G +A PPGK G GPQ
Sbjct: 1371 P-GQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKT-GPIGPQ 1428
Query: 322 PPPGLVYPCG 331
PG P G
Sbjct: 1429 GAPGKPGPDG 1438
Score = 80.1 bits (196), Expect = 3e-15
Identities = 113/399 (28%), Positives = 137/399 (34%), Gaps = 91/399 (22%)
Query: 1 MAASAPPPPDKLEGGGGPAPPPAPP-------STGRK-----QGKAGLQMK----SPEKK 44
M PP P G G P PP + G K G+ GL + P+ +
Sbjct: 1248 MGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGE 1307
Query: 45 RRKSNTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGF 104
R + GP+ + A PP P P DD PK F G P P G
Sbjct: 1308 RGEKGESGPSGA-----AGPPGP-------KGPPGDD--GPKGSPGPVGFPGDPGPPG-- 1351
Query: 105 RVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP--------P 156
+ G AGQ P G G P P P P GP P GP P
Sbjct: 1352 --EPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGA 1409
Query: 157 PGNMNFPSQPFNQ-PLGQNFSP----PSG-QMMPGPVGGFGPMISPTMGQPPRAELGPPS 210
G P P+G +P P G + +PGPVG G SP PP +GPP
Sbjct: 1410 KGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPP-GPMGPPG 1468
Query: 211 LSQRFAQPGAPFGPSPLQRPGQ-GLPSL--PPNTSPFPGPDPGFPGPGGEDGGK------ 261
L PG P G GL L PP G D G PGP G G K
Sbjct: 1469 L------PGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKG-DRGLPGPQGSSGPKGEQGIT 1521
Query: 262 ----PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGG 317
P+ PP P P P A + P+ P +G G PP
Sbjct: 1522 GPSGPIGPPGPPGLPGPP---GPKGAKGSSGPTGPKGEAGHPG---------PP------ 1563
Query: 318 SGPQPPPGLV---YPCGACRSEVNDDQDAILCEASCQKW 353
GP PPG V P A R+ N D +L + + + +
Sbjct: 1564 -GPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGNGENY 1601
Score = 78.6 bits (192), Expect = 1e-14
Identities = 101/365 (27%), Positives = 125/365 (34%), Gaps = 68/365 (18%)
Query: 13 EGGGGPAPPPAPPSTGRKQGKAGLQ-MKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDH 71
+G GP P PP +QG G Q + P+ +GP P H
Sbjct: 708 KGNVGPQGEPGPPG---QQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGH 764
Query: 72 LVASNPFEDDFGAPKVGVAAPPFLGSPVP-----------------------FGGFRVQG 108
P + G G P +G P P F GF+
Sbjct: 765 PGKEGPPGEKGGQGPPGPQGP--IGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDM 822
Query: 109 GMAG---QVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQG----PGYP----PP 157
G+ G ++ P G G P R P P P+GP G PGYP P
Sbjct: 823 GIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPK 882
Query: 158 GNMNFPSQP-FNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFA 216
G++ FP P N G +P PGP G GP PR E GP ++ +
Sbjct: 883 GSIGFPGFPGANGEKGGRGTPGK----PGPRGQRGPT-------GPRGERGPRGITGKPG 931
Query: 217 QPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPD-----------PGFPGPGGEDG--GKPL 263
G G P PG+ P+ P + FPGP PG PG GE G GK
Sbjct: 932 PKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG 991
Query: 264 NP-PASTAFPQEPHSGSPAAAVNGNQ-PSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQ 321
P P PQ P + G+ P PP G G + PG A G G
Sbjct: 992 PPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPA-GLPGKD 1050
Query: 322 PPPGL 326
PPGL
Sbjct: 1051 GPPGL 1055
Score = 74.7 bits (182), Expect = 1e-13
Identities = 105/375 (28%), Positives = 122/375 (32%), Gaps = 74/375 (19%)
Query: 4 SAPPPPDKLEGGGGPAPP---------PAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPA 54
+ PP P + G GP P PP +QG GL K K GPA
Sbjct: 990 TGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTK-----GDPGPA 1044
Query: 55 YSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKV-------GVAAPPFLGSPVPFG--GFR 105
P D F D G P G PP G P P G G R
Sbjct: 1045 ----------GLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPP--GPPGPAGSPGER 1092
Query: 106 VQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-GYPPP------- 157
G AG + G G P P + P P GPA QGP G P P
Sbjct: 1093 GPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPP 1152
Query: 158 ------GNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQP---------- 201
G + P Q ++ PP GP+G GP S G+P
Sbjct: 1153 GEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGP--SGADGEPGPRGQQGLFG 1210
Query: 202 ------PRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPG 255
PR GPP PG P GQ P PP P PG GP
Sbjct: 1211 QKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG-PSGAPGADGPQ 1269
Query: 256 GEDGGKPLNPPASTAFPQEP-HSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKA 314
G GG + P + EP +G P G P P G G + + + PPG
Sbjct: 1270 GPPGG--IGNPGAVGEKGEPGEAGEPGLPGEGGPPG-PKGERGEKGESGPSGAAGPPGPK 1326
Query: 315 G--GGSGPQPPPGLV 327
G G GP+ PG V
Sbjct: 1327 GPPGDDGPKGSPGPV 1341
Score = 71.6 bits (174), Expect = 1e-12
Identities = 103/358 (28%), Positives = 126/358 (35%), Gaps = 54/358 (15%)
Query: 1 MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQ----MKSPEKKRRKSNTQGPAYS 56
+A P P L G GP PP + G G Q ++ P K +G A S
Sbjct: 555 LALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGS 614
Query: 57 HLTEFAPPPT-PMVDHLVASNPFEDDFGAP-KVGVAAPPFLGSPVPFGGFRVQGGMAGQV 114
P T P D F+ G P + G P P G + G G+V
Sbjct: 615 DGARGMPGQTGPKGD-----RGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEV 669
Query: 115 PPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQG-PGYPPPGNMNFPSQPFNQPLGQ 173
P G G P P P PP P GP G PG P GN+ +P P GQ
Sbjct: 670 GP---RGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPG--PKGNVGPQGEP--GPPGQ 722
Query: 174 NFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG-Q 232
P Q +PGP G GP + LG P L PG P P PG +
Sbjct: 723 Q-GNPGAQGLPGPQGAIGP-------PGEKGPLGKPGL------PGMPGADGPPGHPGKE 768
Query: 233 GLPSLPPNTSPFPGPDP--GFPGPGGEDGGKPLNPPASTAFPQEPHSGSPA----AAVNG 286
G P P PGP G+PGP G G + T ++ G P + G
Sbjct: 769 GPPGEKGGQGP-PGPQGPIGYPGPRGVKGADGIRGLKGTK-GEKGEDGFPGFKGDMGIKG 826
Query: 287 NQPSF----------PPNSSGRGGGTPDANSLAPPGKAGGGSGPQPP--PGLVYPCGA 332
++ P GRGG D L PPG+ G P P PG P G+
Sbjct: 827 DRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGS 884
Score = 70.5 bits (171), Expect = 3e-12
Identities = 107/381 (28%), Positives = 121/381 (31%), Gaps = 85/381 (22%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPT 66
P P GG GPA PP QG G GP PP
Sbjct: 930 PGPKGNSGGDGPAGPPGERGPNGPQGPTGFP--------------GPK-------GPPGP 968
Query: 67 PMVDHLVASNPFEDDFGAP-KVGVAAPP-FLGSPVPFGGFRVQGGMAGQVPPGYSTGGGG 124
P D L + G K G PP +G P G G PPG G G
Sbjct: 969 PGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPG-PPGEQG 1027
Query: 125 GPQPLRRQPPPFPPNPMG-PAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMM 183
P ++ P P G P + PP G+P G+ P L N PP G
Sbjct: 1028 LPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFP--GDRGLPGPVGALGLKGNEGPP-GPPG 1084
Query: 184 P-------GPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLP 235
P GP G GP+ P G+P GPP + PG P R G QG
Sbjct: 1085 PAGSPGERGPAGAAGPIGIP--GRP--GPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPV 1140
Query: 236 SLPPNTSPF--PGPDP-----GFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQ 288
LP P PG D G PG G G K P PQ P G P + +
Sbjct: 1141 GLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGP-IGQPGPSGADGE 1199
Query: 289 PS------------------FP-----------PNSSGRGGGTPDANSLAPPGKAG---- 315
P FP P G G T D + PPG G
Sbjct: 1200 PGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGP 1259
Query: 316 ----GGSGPQPPPGLVYPCGA 332
G GPQ PPG + GA
Sbjct: 1260 SGAPGADGPQGPPGGIGNPGA 1280
Score = 70.1 bits (170), Expect = 3e-12
Identities = 102/378 (26%), Positives = 125/378 (33%), Gaps = 81/378 (21%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
P P D L G G P P G AG ++ P SN+ PA PPP
Sbjct: 349 PSPYDDLTYGEGEENPDQPTDPG-----AGAEI--PTSTADTSNSSNPA--------PPP 393
Query: 66 TPMVDHLVAS--------------NPFEDDFGAP-KVGVAAPPFLGSPVP-FGGFRVQGG 109
D L +P+ D +P ++G P + GG R + G
Sbjct: 394 GEGADDLEGEFTEETIRNLDENYYDPYYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEKG 453
Query: 110 MAGQ---VPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP-----PGNMN 161
G+ + PG G GP+ P P P MGP + G PP PG
Sbjct: 454 QKGEPAIIEPGMLIEGPPGPEGPAGLPGP--PGTMGPTGQVGDPGERGPPGRPGLPGADG 511
Query: 162 FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPP----------RAELGPPSL 211
P P G P G G GPM+S Q R GP L
Sbjct: 512 LPGPP-----GTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGL 566
Query: 212 SQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGP--DPGFPGPGGEDGGKPL----NP 265
+ R G P PG P P PGP PG G G DG + + P
Sbjct: 567 TGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGP 626
Query: 266 PASTAFP-------QEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAP---PGKAG 315
F ++ H G P PS PP G G D + P PG+ G
Sbjct: 627 KGDRGFDGLAGLPGEKGHRGDPG-------PSGPPGPPGDDGERGDDGEVGPRGLPGEPG 679
Query: 316 --GGSGPQPPPGLVYPCG 331
G GP+ PPG P G
Sbjct: 680 PRGLLGPKGPPGPPGPPG 697
Score = 67.4 bits (163), Expect = 2e-11
Identities = 103/350 (29%), Positives = 124/350 (35%), Gaps = 55/350 (15%)
Query: 14 GGGGPAPPPAPP-STGRKQGKAGLQMKSPEKKRRKSNTQGPAYSH-LTEFAPPPTPMVDH 71
GGGG A P S Q +A LQ + + +GPA LT P P
Sbjct: 527 GGGGDAGSKGPMVSAQESQAQAILQ-------QARLALRGPAGPMGLTGRPGPVGPPGSG 579
Query: 72 LVASNPFEDDFGAPKVGVAAPPF-LGSPVPFGGFRVQG--GMAGQVPPGYSTGGGG---- 124
+ P + P+ GV PP G P G G GM GQ P G G
Sbjct: 580 GLKGEPGDVGPQGPR-GVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGL 638
Query: 125 -GPQPLRRQPPPF-PPNP------MGPAFNMPPQG-PGYPPPGNMNFPSQPFNQPLGQNF 175
G + R P P PP P G + P+G PG P P + P P P
Sbjct: 639 PGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGV 698
Query: 176 SPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLP 235
+ GQ PGP G GP G+P GPP G P + PG+ P
Sbjct: 699 TGMDGQ--PGPKGNVGPQ-----GEP-----GPPGQQGNPGAQGLPGPQGAIGPPGEKGP 746
Query: 236 SLPPNTSPFPGPD-----PGFPGPGGEDGGK-PLNPPASTAFPQEPHSGSPAAAVNG--- 286
P PG D PG GP GE GG+ P P +P P A + G
Sbjct: 747 LGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYP-GPRGVKGADGIRGLKG 805
Query: 287 -----NQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
+ F P G G D + PPG G GP+ P G P G
Sbjct: 806 TKGEKGEDGF-PGFKGDMGIKGDRGEIGPPGPR-GEDGPEGPKGRGGPNG 853
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 82.4 bits (202), Expect = 7e-16
Identities = 103/365 (28%), Positives = 131/365 (35%), Gaps = 61/365 (16%)
Query: 4 SAPP--PPDKLEGGGGPAPPPAPP------STGRKQGKAGLQMKSPEKKRRKSNTQGPAY 55
S PP PP P PP+ P S G + G PE +R + P
Sbjct: 124 SRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGP-------PEPQRNRMPPPRPDV 176
Query: 56 SHLTEFAPPPTPMVDHLVASNPFEDDFGAPKV--GVAAPPFLGSPVPFGGFR---VQGGM 110
+ PPP P + S+P G+P V G P +P PF G R + GG
Sbjct: 177 GSKPDSIPPPVPSTPRPIQSSPHNR--GSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGS 234
Query: 111 AGQVPPGYSTGGGGGPQPLRRQP-------PPFPPNPMGPAFNMPPQGPGYPPPGNMN-- 161
Q P S+ P PL P PP PP P+G ++ + PPP N
Sbjct: 235 IRQSPLSSSSPFSNRP-PLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPP 293
Query: 162 FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAP 221
PS P Q PP PGP P+ + G L +LS + P
Sbjct: 294 VPSTPRPSASSQAPPPPPPPSRPGPP----PLPPSSSGNDETPRLPQRNLSLSSSTP--- 346
Query: 222 FGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPA 281
PL PG+ P PP P P P P G G P PP S +GS +
Sbjct: 347 ----PLPSPGRSGPLPPP---PSERPPPPVRDPPGRSGPLPPPPPVS-------RNGSTS 392
Query: 282 AAVNGNQPSFPPNS---SGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVN 338
A+ P P S S R G P PP + G+ P PPP G S
Sbjct: 393 RALPAT-PQLPSRSGVDSPRSGPRPPL----PPDRPSAGAPPPPPPSTSIRNGFQDSPCE 447
Query: 339 DDQDA 343
D+ ++
Sbjct: 448 DEWES 452
Score = 67.0 bits (162), Expect = 3e-11
Identities = 91/333 (27%), Positives = 114/333 (34%), Gaps = 59/333 (17%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
GGGG PP G GL K R +N + PP P
Sbjct: 87 GGGGSFGGGGPPGLG------GLFQAGMPKLRSTANRDNDSGGS----RPPLLPPGGRST 136
Query: 74 ASNPFEDDFGAPKVGVAAPPFL-GSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQ 132
++ PF G + V +P G P P ++PP G P +
Sbjct: 137 SAKPFSPPSGPGRFPVPSPGHRSGPPEP---------QRNRMPPP-RPDVGSKPDSI--- 183
Query: 133 PPPFPPNPMGPAFNMPPQGPGYPP-PGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFG 191
PPP P P P G PP PG P QP P F G + G
Sbjct: 184 PPPVPSTPR--PIQSSPHNRGSPPVPGG---PRQPSPGPTPPPFPGNRGTALGGGSIRQS 238
Query: 192 PMIS--PTMGQPPRAELGPPSLSQRFAQPGAPFG-----------PSPLQRPGQGLPSLP 238
P+ S P +PP +L + P P G P P Q +PS P
Sbjct: 239 PLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTP 298
Query: 239 -PNTS---PFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPN 294
P+ S P P P P PGP P PP+S+ + P +++ + P P
Sbjct: 299 RPSASSQAPPPPPPPSRPGP-------PPLPPSSSGNDETPRLPQRNLSLSSSTPPLP-- 349
Query: 295 SSGRGGGTPDANSLAPPGKA---GGGSGPQPPP 324
S GR G P S PP G SGP PPP
Sbjct: 350 SPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPP 382
Score = 60.8 bits (146), Expect = 2e-09
Identities = 73/261 (27%), Positives = 90/261 (34%), Gaps = 35/261 (13%)
Query: 93 PFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPF-------PPNPMGPAF 145
P L P G GG G G GGGGG PP P A
Sbjct: 57 PILDKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTAN 116
Query: 146 NMPPQGPGYP---PPGNMNFPSQPFNQPLGQ-NFSPPSGQMMPGPVGGFGPMISPTMGQP 201
G P PPG + ++PF+ P G F PS GP P P
Sbjct: 117 RDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGP-----PEPQRNRMPP 171
Query: 202 PRAELG--PPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGE-- 257
PR ++G P S+ P SP R +P P SP P P P FPG G
Sbjct: 172 PRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPP-FPGNRGTAL 230
Query: 258 DGGKPLNPPASTAFP---QEPHSGSPAAAVNGNQPSFPPNSSGRGG-------GTPDANS 307
GG P S++ P + P +P+ A++ P PP R P N+
Sbjct: 231 GGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNN 290
Query: 308 LAP----PGKAGGGSGPQPPP 324
P P + P PPP
Sbjct: 291 KPPVPSTPRPSASSQAPPPPP 311
Score = 47.8 bits (112), Expect = 2e-05
Identities = 66/271 (24%), Positives = 80/271 (29%), Gaps = 84/271 (30%)
Query: 3 ASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFA 62
++ PP P PPP PP G + P R E
Sbjct: 247 SNRPPLPPTPSRALDDKPPPPPPPVGNR----------PSIHR--------------EAV 282
Query: 63 PPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGG 122
PPP P + PP +P P + Q PP
Sbjct: 283 PPPPPQNN--------------------KPPVPSTPRP--------SASSQAPP------ 308
Query: 123 GGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQM 182
P P R PPP PP+ GN P P + +PP
Sbjct: 309 -PPPPPSRPGPPPLPPS----------------SSGNDETPRLPQRNLSLSSSTPP---- 347
Query: 183 MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNT- 241
+P P G GP+ P +PP PP S P R P LP +
Sbjct: 348 LPSP-GRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSG 406
Query: 242 --SPFPGPDPGFPGPGGEDGGKPLNPPASTA 270
SP GP P P P G P PP ST+
Sbjct: 407 VDSPRSGPRPPLP-PDRPSAGAPPPPPPSTS 436
Score = 34.3 bits (77), Expect = 0.21
Identities = 56/243 (23%), Positives = 77/243 (31%), Gaps = 50/243 (20%)
Query: 2 AASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEF 61
++ APPPP P PPP PPS+ L P++ S++ P S
Sbjct: 303 SSQAPPPPPP---PSRPGPPPLPPSSSGNDETPRL----PQRNLSLSSSTPPLPSPGRSG 355
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPG--YS 119
PP P P V PP P+P + G + P
Sbjct: 356 PLPPPPS--------------ERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQL 401
Query: 120 TGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNM---NFPSQPFNQPLGQNFS 176
G P PP PP+ P+ PP PPP F P F
Sbjct: 402 PSRSGVDSPRSGPRPPLPPD--RPSAGAPPP----PPPSTSIRNGFQDSPCEDEWESRFY 455
Query: 177 PPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPS 236
+P P P + T P + L++ ++ G+ R +G P
Sbjct: 456 FHPISDLPPP----EPYVQTTKSYPSK-------LARNESRSGS-------NRRERGAPP 497
Query: 237 LPP 239
LPP
Sbjct: 498 LPP 500
Score = 30.0 bits (66), Expect = 3.9
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 28/109 (25%)
Query: 1 MAASAPPPPDKLEGGGGPAPPP----APPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYS 56
+++S PP P G GP PPP PP G++G P R S
Sbjct: 341 LSSSTPPLPSP--GRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGS-------- 390
Query: 57 HLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAP-----PFLGSPVP 100
T A P TP + P +P+ G P P G+P P
Sbjct: 391 --TSRALPATPQL-------PSRSGVDSPRSGPRPPLPPDRPSAGAPPP 430
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 82.4 bits (202), Expect = 7e-16
Identities = 103/365 (28%), Positives = 131/365 (35%), Gaps = 61/365 (16%)
Query: 4 SAPP--PPDKLEGGGGPAPPPAPP------STGRKQGKAGLQMKSPEKKRRKSNTQGPAY 55
S PP PP P PP+ P S G + G PE +R + P
Sbjct: 124 SRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGP-------PEPQRNRMPPPRPDV 176
Query: 56 SHLTEFAPPPTPMVDHLVASNPFEDDFGAPKV--GVAAPPFLGSPVPFGGFR---VQGGM 110
+ PPP P + S+P G+P V G P +P PF G R + GG
Sbjct: 177 GSKPDSIPPPVPSTPRPIQSSPHNR--GSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGS 234
Query: 111 AGQVPPGYSTGGGGGPQPLRRQP-------PPFPPNPMGPAFNMPPQGPGYPPPGNMN-- 161
Q P S+ P PL P PP PP P+G ++ + PPP N
Sbjct: 235 IRQSPLSSSSPFSNRP-PLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPP 293
Query: 162 FPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAP 221
PS P Q PP PGP P+ + G L +LS + P
Sbjct: 294 VPSTPRPSASSQAPPPPPPPSRPGPP----PLPPSSSGNDETPRLPQRNLSLSSSTP--- 346
Query: 222 FGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPA 281
PL PG+ P PP P P P P G G P PP S +GS +
Sbjct: 347 ----PLPSPGRSGPLPPP---PSERPPPPVRDPPGRSGPLPPPPPVS-------RNGSTS 392
Query: 282 AAVNGNQPSFPPNS---SGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVN 338
A+ P P S S R G P PP + G+ P PPP G S
Sbjct: 393 RALPAT-PQLPSRSGVDSPRSGPRPPL----PPDRPSAGAPPPPPPSTSIRNGFQDSPCE 447
Query: 339 DDQDA 343
D+ ++
Sbjct: 448 DEWES 452
Score = 67.0 bits (162), Expect = 3e-11
Identities = 91/333 (27%), Positives = 114/333 (34%), Gaps = 59/333 (17%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
GGGG PP G GL K R +N + PP P
Sbjct: 87 GGGGSFGGGGPPGLG------GLFQAGMPKLRSTANRDNDSGGS----RPPLLPPGGRST 136
Query: 74 ASNPFEDDFGAPKVGVAAPPFL-GSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQ 132
++ PF G + V +P G P P ++PP G P +
Sbjct: 137 SAKPFSPPSGPGRFPVPSPGHRSGPPEP---------QRNRMPPP-RPDVGSKPDSI--- 183
Query: 133 PPPFPPNPMGPAFNMPPQGPGYPP-PGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFG 191
PPP P P P G PP PG P QP P F G + G
Sbjct: 184 PPPVPSTPR--PIQSSPHNRGSPPVPGG---PRQPSPGPTPPPFPGNRGTALGGGSIRQS 238
Query: 192 PMIS--PTMGQPPRAELGPPSLSQRFAQPGAPFG-----------PSPLQRPGQGLPSLP 238
P+ S P +PP +L + P P G P P Q +PS P
Sbjct: 239 PLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTP 298
Query: 239 -PNTS---PFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPN 294
P+ S P P P P PGP P PP+S+ + P +++ + P P
Sbjct: 299 RPSASSQAPPPPPPPSRPGP-------PPLPPSSSGNDETPRLPQRNLSLSSSTPPLP-- 349
Query: 295 SSGRGGGTPDANSLAPPGKA---GGGSGPQPPP 324
S GR G P S PP G SGP PPP
Sbjct: 350 SPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPP 382
Score = 60.8 bits (146), Expect = 2e-09
Identities = 73/261 (27%), Positives = 90/261 (34%), Gaps = 35/261 (13%)
Query: 93 PFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPF-------PPNPMGPAF 145
P L P G GG G G GGGGG PP P A
Sbjct: 57 PILDKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTAN 116
Query: 146 NMPPQGPGYP---PPGNMNFPSQPFNQPLGQ-NFSPPSGQMMPGPVGGFGPMISPTMGQP 201
G P PPG + ++PF+ P G F PS GP P P
Sbjct: 117 RDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGP-----PEPQRNRMPP 171
Query: 202 PRAELG--PPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGE-- 257
PR ++G P S+ P SP R +P P SP P P P FPG G
Sbjct: 172 PRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPP-FPGNRGTAL 230
Query: 258 DGGKPLNPPASTAFP---QEPHSGSPAAAVNGNQPSFPPNSSGRGG-------GTPDANS 307
GG P S++ P + P +P+ A++ P PP R P N+
Sbjct: 231 GGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNN 290
Query: 308 LAP----PGKAGGGSGPQPPP 324
P P + P PPP
Sbjct: 291 KPPVPSTPRPSASSQAPPPPP 311
Score = 47.8 bits (112), Expect = 2e-05
Identities = 66/271 (24%), Positives = 80/271 (29%), Gaps = 84/271 (30%)
Query: 3 ASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFA 62
++ PP P PPP PP G + P R E
Sbjct: 247 SNRPPLPPTPSRALDDKPPPPPPPVGNR----------PSIHR--------------EAV 282
Query: 63 PPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGG 122
PPP P + PP +P P + Q PP
Sbjct: 283 PPPPPQNN--------------------KPPVPSTPRP--------SASSQAPP------ 308
Query: 123 GGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQM 182
P P R PPP PP+ GN P P + +PP
Sbjct: 309 -PPPPPSRPGPPPLPPS----------------SSGNDETPRLPQRNLSLSSSTPP---- 347
Query: 183 MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNT- 241
+P P G GP+ P +PP PP S P R P LP +
Sbjct: 348 LPSP-GRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSG 406
Query: 242 --SPFPGPDPGFPGPGGEDGGKPLNPPASTA 270
SP GP P P P G P PP ST+
Sbjct: 407 VDSPRSGPRPPLP-PDRPSAGAPPPPPPSTS 436
Score = 34.3 bits (77), Expect = 0.21
Identities = 56/243 (23%), Positives = 77/243 (31%), Gaps = 50/243 (20%)
Query: 2 AASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEF 61
++ APPPP P PPP PPS+ L P++ S++ P S
Sbjct: 303 SSQAPPPPPP---PSRPGPPPLPPSSSGNDETPRL----PQRNLSLSSSTPPLPSPGRSG 355
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPG--YS 119
PP P P V PP P+P + G + P
Sbjct: 356 PLPPPPS--------------ERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQL 401
Query: 120 TGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNM---NFPSQPFNQPLGQNFS 176
G P PP PP+ P+ PP PPP F P F
Sbjct: 402 PSRSGVDSPRSGPRPPLPPD--RPSAGAPPP----PPPSTSIRNGFQDSPCEDEWESRFY 455
Query: 177 PPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPS 236
+P P P + T P + L++ ++ G+ R +G P
Sbjct: 456 FHPISDLPPP----EPYVQTTKSYPSK-------LARNESRSGS-------NRRERGAPP 497
Query: 237 LPP 239
LPP
Sbjct: 498 LPP 500
Score = 30.0 bits (66), Expect = 3.9
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 28/109 (25%)
Query: 1 MAASAPPPPDKLEGGGGPAPPP----APPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYS 56
+++S PP P G GP PPP PP G++G P R S
Sbjct: 341 LSSSTPPLPSP--GRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGS-------- 390
Query: 57 HLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAP-----PFLGSPVP 100
T A P TP + P +P+ G P P G+P P
Sbjct: 391 --TSRALPATPQL-------PSRSGVDSPRSGPRPPLPPDRPSAGAPPP 430
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 82.4 bits (202), Expect = 7e-16
Identities = 112/384 (29%), Positives = 131/384 (34%), Gaps = 79/384 (20%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P G GP PP P +G+ GL +K GP PP P
Sbjct: 666 PKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDK--------GP--------MGPPGPK 709
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
D + + G P+ P G P G +G M P G+ G G Q
Sbjct: 710 GD--------QGEKG-PRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQ--GPRGEQG 758
Query: 129 LRRQP----PPFPPNPMGPAFNMPPQGP-GYP----PPGNMNFPSQPFNQPLGQNFS--- 176
L P PP P G PQGP G P PG P P + S
Sbjct: 759 LTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLT 818
Query: 177 ------PPSGQMMPGPVGGFGPMISPTMGQPPRAEL----GPPSLSQRFAQPG--APFGP 224
PP PGP G GP + G P E+ GPP PG P P
Sbjct: 819 VPGPPGPPGAMGPPGPPGAPGP--AGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPP 876
Query: 225 SPLQRPGQGLPSLPPNTSPF-----------PGPDPGFPGPGGEDGGK-PLNPPASTAFP 272
P PG+GLP P F PGP PG PGP G+ G P P
Sbjct: 877 GPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGP-PGPPGPKGDQGPPGPRGHQGEQGLP 935
Query: 273 QEPHSGSPAAAVNGNQPSFPPNSSGRGG-----GTPDANSLAPPGKAGGG-------SGP 320
SGS + +N P PP G G G P A + P G + GG SGP
Sbjct: 936 GFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGI-PSGPSEGGSSSTMYVSGP 994
Query: 321 QPPPGLVYPCGACRSEVNDDQDAI 344
PPG P G+ S + Q I
Sbjct: 995 PGPPGPPGPPGSISSSGQEIQQYI 1018
Score = 66.2 bits (160), Expect = 5e-11
Identities = 90/347 (25%), Positives = 112/347 (32%), Gaps = 49/347 (14%)
Query: 13 EGGGGPAPPPAPPSTGRKQGKAGLQ----MKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
+G GPA P +QG G+ P K GP P +
Sbjct: 739 KGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGI 798
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
A G+ + V PP G P G G G P G G +
Sbjct: 799 KGEPGAPGKIVTSEGSSMLTVPGPP--GPPGAMG----PPGPPGAPGPAGPAGLPGHQEV 852
Query: 129 LRRQPPPFPPNPMGPAFNMPPQGPGYP-PPGNMNFPSQPFNQPLGQ--NFSPPSGQMMPG 185
L Q PP PP P G P GP P PPG P + P G +F S + G
Sbjct: 853 LNLQGPPGPPGPRG------PPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSG 906
Query: 186 PVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAP-FGPSPLQRPGQGLPSLPPNTSPF 244
P G GP P+ + GPP + G P F S G S N
Sbjct: 907 PPGPPGP-------PGPKGDQGPPGPRGHQGEQGLPGFSTS-------GSSSFGLNLQGP 952
Query: 245 PGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPD 304
PGP PG GP G+ G + P + P P G ++ + + P PP G G
Sbjct: 953 PGP-PGPQGPKGDKGDPGV--PGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISS 1009
Query: 305 A------------NSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVND 339
+ S + G GP PPG P E D
Sbjct: 1010 SGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGPVTTITGETFD 1056
Score = 56.2 bits (134), Expect = 5e-08
Identities = 79/268 (29%), Positives = 91/268 (33%), Gaps = 53/268 (19%)
Query: 100 PFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGP-GYP--- 155
P G + + G AG+ P G G P P P P GP +G G P
Sbjct: 638 PGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVK 697
Query: 156 -------PPGNMNFPSQPFNQPLGQNFSP-----PSGQMMPGPVGGFGPMISPTMGQPPR 203
PPG Q P G P P PG G GP P Q PR
Sbjct: 698 GDKGPMGPPGPKG--DQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGP-AGPDGHQGPR 754
Query: 204 AELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDG--GK 261
E G + PG P P PG+ + P PG PG PG GE G GK
Sbjct: 755 GEQGLTGM------PGIRGPPGPSGDPGKPGLTGPQGPQGLPG-TPGRPGIKGEPGAPGK 807
Query: 262 --------------PLNPPASTAFPQEPHSGSPA--AAVNGNQPSF----PPNSSGRGGG 301
P PP + P P + PA A + G+Q PP G G
Sbjct: 808 IVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPG-PRG 866
Query: 302 TPDANSLAPPGKAG----GGSGPQPPPG 325
P + PPG G G GP PPG
Sbjct: 867 PPGPSIPGPPGPRGPPGEGLPGPPGPPG 894
Score = 51.2 bits (121), Expect = 2e-06
Identities = 69/240 (28%), Positives = 85/240 (35%), Gaps = 34/240 (14%)
Query: 108 GGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPF 167
G + G P G G P P + P P GP + PQGP G++ P
Sbjct: 563 GNLRGSPGP---KGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGP-KGQKGSVGDPG--M 616
Query: 168 NQPLGQNFSPPSGQMMP-GPVGGFGPMISPTMGQPPRA----ELGPPSLSQRFAQPGAPF 222
P+GQ G+ P GP G GP S G+ A GPP + G+
Sbjct: 617 EGPMGQR-----GREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSG 671
Query: 223 GPSPLQRPGQ----------GLPSLPPNTSPFPGPDPGFPGPGGEDGGKPL-NPPASTAF 271
P P PG GLP + + P GP PG G GE G + L P
Sbjct: 672 SPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPM-GP-PGPKGDQGEKGPRGLTGEPGMRGL 729
Query: 272 PQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG-----GGSGPQPPPGL 326
P A+ P G G T PPG +G G +GPQ P GL
Sbjct: 730 PGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGL 789
Score = 49.3 bits (116), Expect = 6e-06
Identities = 66/240 (27%), Positives = 79/240 (32%), Gaps = 35/240 (14%)
Query: 3 ASAPPPPDKLEGGGGPAPPP---------APPSTGRKQGKAGLQMKSPEKKRRKSNTQGP 53
A PP P G GPA P PP +G G + P R GP
Sbjct: 828 AMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPR------GP 881
Query: 54 AYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQ 113
L PP P L S F G P G PP G G +G Q
Sbjct: 882 PGEGL---PGPPGPPGSFLSNSETFLS--GPP--GPPGPP--GPKGDQGPPGPRGHQGEQ 932
Query: 114 VPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQ 173
PG+ST G L Q PP PP P GP + G PG + PS P
Sbjct: 933 GLPGFSTSGSSS-FGLNLQGPPGPPGPQGPKGDKGDPG----VPGALGIPSGPSEGGSSS 987
Query: 174 NF------SPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPL 227
PP PG + G I + + +++ LS PG P P P+
Sbjct: 988 TMYVSGPPGPPGPPGPPGSISSSGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGPV 1047
Score = 48.9 bits (115), Expect = 8e-06
Identities = 71/261 (27%), Positives = 83/261 (31%), Gaps = 81/261 (31%)
Query: 4 SAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAP 63
+ P PP G P PP AP G AGL P + +
Sbjct: 818 TVPGPPGPPGAMGPPGPPGAPGPA----GPAGL----------------PGHQEVLNLQG 857
Query: 64 PPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGG 123
PP P P+ G P G P P G PPG G
Sbjct: 858 PPGP---------------PGPR-GPPGPSIPGPPGPRG------------PPGEGLPGP 889
Query: 124 GGP-------QPLRRQPPPFPPNPMGPAFNMPPQGP-GYPPPGNMNFPSQPFNQPLGQNF 175
GP PP PP P GP + P GP G+ + S + G N
Sbjct: 890 PGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNL 949
Query: 176 SPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLP 235
P G PGP G P+ + G P + PGA PS P +G
Sbjct: 950 QGPPGP--PGPQG-------------PKGDKGDPGV------PGALGIPS---GPSEGGS 985
Query: 236 SLPPNTSPFPGPDPGFPGPGG 256
S S PGP PG PGP G
Sbjct: 986 SSTMYVSGPPGP-PGPPGPPG 1005
Score = 38.9 bits (89), Expect = 0.008
Identities = 57/206 (27%), Positives = 71/206 (34%), Gaps = 31/206 (15%)
Query: 134 PPFPPNPMGPAFN--------------MPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPS 179
PP PP G ++ + P GP PP N S + L
Sbjct: 1150 PPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPGNVWSSISVEDLSSYLHTAG 1209
Query: 180 GQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPP 239
+PGP G GP PR GPP +S A A S L S P
Sbjct: 1210 LSFIPGPPGPPGP-------PGPR---GPPGVSGALATYAAENSDSFRSELISYLTS--P 1257
Query: 240 NTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRG 299
+ F PG PGP G G L ST S S + + + + S +S G
Sbjct: 1258 DVRSFIVGPPGPPGPQGPPGDSRL---LSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTG 1314
Query: 300 GGTPDANSLAPPGKAGGGSGPQPPPG 325
GG A SL G G +G + P G
Sbjct: 1315 GG--GAGSLGAGGAFGEAAGDRGPYG 1338
Score = 32.7 bits (73), Expect = 0.60
Identities = 50/201 (24%), Positives = 63/201 (31%), Gaps = 61/201 (30%)
Query: 4 SAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAP 63
S PP P G G PP P +QG G +T G + L P
Sbjct: 905 SGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGF------------STSGSSSFGLNLQGP 952
Query: 64 PPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGG 123
P P + D G P V P LG +P G S GG
Sbjct: 953 PGPP------GPQGPKGDKGDPGV----PGALG-----------------IPSGPSEGGS 985
Query: 124 GGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPS---- 179
+ PP PP P G PPG+++ Q Q + + S
Sbjct: 986 SSTMYV--SGPPGPPGPPG-------------PPGSISSSGQEIQQYISEYMQSDSIRSY 1030
Query: 180 ---GQMMPGPVGGFGPMISPT 197
Q PGP G GP+ + T
Sbjct: 1031 LSGVQGPPGPPGPPGPVTTIT 1051
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 81.6 bits (200), Expect = 1e-15
Identities = 120/395 (30%), Positives = 143/395 (36%), Gaps = 101/395 (25%)
Query: 8 PPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPP--P 65
PP K G GP PP P G +G G P+ + T GP E P P
Sbjct: 607 PPGK-NGETGPQGPPGPTGPGGDKGDTG--PPGPQGLQGLPGTGGPP----GENGKPGEP 659
Query: 66 TPMVDHLVASNPF-EDDFGAP----KVGVAAPPFL----GSPVPFGGFRVQG-----GMA 111
P D P + D GAP G+A P L G P P GG G G A
Sbjct: 660 GPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAA 719
Query: 112 G----QVPPGYSTG-GGGGPQPLRRQP----------------PPFPPNPMGPAFNMPPQ 150
G Q PG G G GP+ + +P P P P GPA +
Sbjct: 720 GTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDK 779
Query: 151 G----PGYP----------------PPGNMNFPSQPFNQPLGQNFSP--PSGQMMPGPVG 188
G PG P PPG FP P GQN P + PG G
Sbjct: 780 GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP-----GQNGEPGGKGERGAPGEKG 834
Query: 189 GFGPMISPTMGQPPRAE--LGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLPPNTSPFP 245
GP P + PP GPP + G+P GP PG +GLP PP ++ P
Sbjct: 835 EGGP---PGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPG-PPGSNGNP 890
Query: 246 GPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDA 305
GP PG G G+DG P P +T P GSP S P +G+ G
Sbjct: 891 GP-PGPSGSPGKDG--PPGPAGNTGAP-----GSPGV-------SGPKGDAGQPGEKGSP 935
Query: 306 NSLAPPGKAG--------GGSGPQPPPGLVYPCGA 332
+ PPG G G G PPG+ P G+
Sbjct: 936 GAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGS 970
Score = 75.1 bits (183), Expect = 1e-13
Identities = 102/366 (27%), Positives = 125/366 (34%), Gaps = 82/366 (22%)
Query: 4 SAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAP 63
+AP P +G GP P PP + G G+ + + P + E P
Sbjct: 93 TAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIP-------GQPGSPGSPGPPGICESCP 145
Query: 64 PPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGG 123
+P D + K GVA G P P G G PPG S G
Sbjct: 146 TGPQNY------SPQYDSYDV-KSGVAVGGLAGYPGPAGPPGPPG------PPGTS-GHP 191
Query: 124 GGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSP--PSGQ 181
G P Q PP P GP+ P GP PG + PS P + G++ P P +
Sbjct: 192 GSPGSPGYQGPPGEPGQAGPS---GPPGP----PGAIG-PSGPAGKD-GESGRPGRPGER 242
Query: 182 MMPGPVGGFGPMISPTMGQP-------------PRAELGPPSLSQRFAQPG-----APFG 223
+PGP G GP P G P + E G P L PG P G
Sbjct: 243 GLPGPPGIKGPAGIP--GFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMG 300
Query: 224 P--SPLQRPGQGLPSL--------------------PPNTSPFPGPDPGFPGPGGEDGGK 261
P +P +R GLP PP T+ FPG PG GE G
Sbjct: 301 PRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGS----PGAKGEVG-- 354
Query: 262 PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSG 319
P P S P + P P PP +G GG + PG G G G
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARG 414
Query: 320 PQPPPG 325
P P G
Sbjct: 415 PPGPAG 420
Score = 74.3 bits (181), Expect = 2e-13
Identities = 95/333 (28%), Positives = 112/333 (33%), Gaps = 55/333 (16%)
Query: 3 ASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFA 62
A+ P D + GG G P P GK G P + +S GP
Sbjct: 520 AAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPG-----PPGSQGESGRPGP--------- 565
Query: 63 PPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGG 122
P P+ P F PK AP G GG GG Q PPG + G
Sbjct: 566 PGPSGP-----RGQPGVMGFPGPKGNDGAP---GKNGERGG---PGGPGPQGPPGKN--G 612
Query: 123 GGGPQPLRRQPPPFPPNPMGPAFNMPPQGP----GYP----PPGNMNFPSQPFNQPLGQN 174
GPQ PP P P G + P GP G P PPG P +P
Sbjct: 613 ETGPQG-----PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEP-------- 659
Query: 175 FSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGL 234
P PG GG G +P PP G P L PG G PG
Sbjct: 660 -GPKGDAGAPGAPGGKGDAGAPGERGPPGLA-GAPGLRGGAGPPGPEGGKGAAGPPGPPG 717
Query: 235 PSLPPNTSPFPGPDPGF--PGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFP 292
+ P PG G PGP G D G+P P + P + P + P+
Sbjct: 718 AAGTPGLQGMPGERGGLGSPGPKG-DKGEP-GGPGADGVPGKDGPRGPTGPIGPPGPAGQ 775
Query: 293 PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPG 325
P G GG P +A P + G G PPG
Sbjct: 776 PGDKGE-GGAPGLPGIAGPRGSPGERGETGPPG 807
Score = 72.4 bits (176), Expect = 7e-13
Identities = 98/342 (28%), Positives = 114/342 (33%), Gaps = 57/342 (16%)
Query: 10 DKLEGGGGPAPPPAPPSTGRKQGKAGLQMK-----SPEKKRRKSNTQGPA-YSHLTEFAP 63
D G G PP PP T G G + + SP P H P
Sbjct: 323 DGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGP 382
Query: 64 PPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGS---PVPFGGFRVQGGMAGQVPPGYST 120
P P ++ G P AP +G+ P P G G G PG
Sbjct: 383 PGPPGINGSPGGKGEMGPAGIP----GAPGLMGARGPPGPAGANGAPGLRGGAGEPG-KN 437
Query: 121 GGGGGPQPL-RRQPPPFPPNPMGPAFNMPPQGPGYPP----PGNMNFPSQP-FNQPLGQN 174
G G P P R P P + PG P PG P F P G N
Sbjct: 438 GAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPN 497
Query: 175 FSP----PSGQM-MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQR 229
P P+G+ PGP G G G+P R G P PG+P GP +
Sbjct: 498 GIPGEKGPAGERGAPGPAGPRG-----AAGEPGRD--GVPGGPGMRGMPGSPGGPGSDGK 550
Query: 230 PGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQP 289
PG PP + G PG PGP G P P FP GN
Sbjct: 551 PG------PPGSQGESGR-PGPPGPSG-----PRGQPGVMGFP----------GPKGNDG 588
Query: 290 SFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
+ P +G GG PPGK G +GPQ PPG P G
Sbjct: 589 A--PGKNGERGGPGGPGPQGPPGK-NGETGPQGPPGPTGPGG 627
Score = 71.2 bits (173), Expect = 2e-12
Identities = 99/351 (28%), Positives = 116/351 (33%), Gaps = 55/351 (15%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAG----------LQMKSPEKKRRKSNTQGPAY 55
PP GG GPA PP P ++G G + P GP+
Sbjct: 838 PPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897
Query: 56 SHLTEFAPPP---TPMVDHLVASNPFEDDFGAP----KVGVAAPPFLGSPVPFGGFRVQG 108
S + P P T S P + D G P G PP P+ G
Sbjct: 898 SPGKDGPPGPAGNTGAPGSPGVSGP-KGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR 956
Query: 109 GMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP--PGNMNFPSQP 166
G+AG PPG G G P P + P G + P GP P G P +
Sbjct: 957 GLAG--PPG-MPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRD 1013
Query: 167 FNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSP 226
N P +PG G G G+ R E G P PG P P
Sbjct: 1014 GN---------PGSDGLPGRDGSPG-------GKGDRGENGSPGAPGAPGHPGPPGPVGP 1057
Query: 227 LQRPGQGLPSLPPNTSPFPGP--DPGFPGPGGEDGGKPLNPPASTA-------FPQEPHS 277
+ G S P + PGP G PGP G G K A FP P +
Sbjct: 1058 AGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGA 1117
Query: 278 -GSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
GSP A G Q + S G G PPGK G G GP PPG
Sbjct: 1118 PGSPGPA--GQQGAI--GSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPG 1164
Score = 68.9 bits (167), Expect = 8e-12
Identities = 75/221 (33%), Positives = 86/221 (38%), Gaps = 28/221 (12%)
Query: 123 GGGPQPLRRQP-PPFPPNPMG-PAFNMPPQGPGYP-PPGNM-NFPSQPFN-QPLGQNFSP 177
G GPQ + P PP P G P P PG P PPG + P+ P N P ++
Sbjct: 101 GQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDV 160
Query: 178 PSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSL 237
SG + G G GP P PP GPP S PG+P P PGQ PS
Sbjct: 161 KSGVAVGGLAGYPGPAGPPG---PP----GPPGTSGHPGSPGSPGYQGPPGEPGQAGPSG 213
Query: 238 PPNTSPFPGPDPGFPGPGGEDG--GKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNS 295
PP GP GP G+DG G+P P P P PA P FP
Sbjct: 214 PPGPPGAIGPS----GPAGKDGESGRP-GRPGERGLPGPPGIKGPAGI-----PGFPGMK 263
Query: 296 SGRG--GGTPDANSLAPPGKAG--GGSGPQPPPGLVYPCGA 332
RG G + PG G G G PG + P GA
Sbjct: 264 GHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGA 304
Score = 58.9 bits (141), Expect = 8e-09
Identities = 59/181 (32%), Positives = 70/181 (38%), Gaps = 33/181 (18%)
Query: 169 QPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQ 228
QP PP+GQ GP G GP G P R G P + QPG+P P P
Sbjct: 90 QPPTAPTRPPNGQGPQGPKGDPGP-----PGIPGRN--GDPGIP---GQPGSPGSPGP-- 137
Query: 229 RPG--QGLPSLPPNTSP-----------FPGPDPGFPGPGGEDGGKPLNPPASTAFPQEP 275
PG + P+ P N SP G G+PGP G G P PP ++ P P
Sbjct: 138 -PGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPG--PPGPPGTSGHPGSP 194
Query: 276 HS---GSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGLVYPC 330
S P PS PP G G + A G+ G G G PPG+ P
Sbjct: 195 GSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPA 254
Query: 331 G 331
G
Sbjct: 255 G 255
Score = 50.1 bits (118), Expect = 4e-06
Identities = 51/169 (30%), Positives = 60/169 (35%), Gaps = 39/169 (23%)
Query: 184 PGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSP 243
P P FG + QPP A PP+ P GP + G P +P
Sbjct: 75 PNPEIPFGECCA-VCPQPPTAPTRPPNGQ-------GPQGP----KGDPGPPGIPGRNG- 121
Query: 244 FPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSP---------AAAVNG-------- 286
DPG PG G G P P + P P + SP AV G
Sbjct: 122 ----DPGIPGQPGSP-GSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPA 176
Query: 287 --NQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGLVYPCG 331
P PP +SG G PPG+ G G SGP PPG + P G
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSG 225
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 81.3 bits (199), Expect = 1e-15
Identities = 97/326 (29%), Positives = 117/326 (35%), Gaps = 51/326 (15%)
Query: 22 PAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDD 81
P S G G AG + +K P ++ P P++ + P
Sbjct: 24 PRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPG 83
Query: 82 FGAPKVGVAAPPFLGSP-VPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLR-RQPPPFPPN 139
P+ P F G P + G Q G AG PPG+S G GP L + PP P
Sbjct: 84 KPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAG--PPGFSRMGKAGPPGLPGKVGPPGQPG 141
Query: 140 PMGP-------AFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGP 192
G PP PG P P + P +P Q + PP Q PGP G GP
Sbjct: 142 LRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVP---GPPGFQGEPGPQGEPGP 198
Query: 193 MISPTMGQPPRAELGPPSLSQRFAQPGAPF-----GPSPLQRPG-QGLPSLPPNTSPFPG 246
G +G P L Q GAP GP+ L +PG GLP P + G
Sbjct: 199 --PGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGE-SG 255
Query: 247 PDPGFPGPGGEDGGK-PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDA 305
P PG PGP GE G P PP G P AA G P
Sbjct: 256 P-PGVPGPRGEPGAVGPKGPPGVDGV------GVPGAA-----------------GLPGP 291
Query: 306 NSLAPPGKAGGGSGPQPPPGLVYPCG 331
P A G G + PPGL+ P G
Sbjct: 292 QG---PSGAKGEPGTRGPPGLIGPTG 314
Score = 73.9 bits (180), Expect = 2e-13
Identities = 102/371 (27%), Positives = 121/371 (32%), Gaps = 56/371 (15%)
Query: 3 ASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFA 62
A P P +G GP P PP +G G+ + GP L A
Sbjct: 177 AQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGP--PGLPGPA 234
Query: 63 PPPTPMVDHLVASNPFEDDFGAPKV-------------------GVAAPPFLGSPVPFGG 103
P +D L + + + G P V GV P G P P G
Sbjct: 235 GLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGP 294
Query: 104 FRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFP 163
+G + PPG G G L P P GPA +P PG P
Sbjct: 295 SGAKGEPGTRGPPGLIGPTGYGMPGL-----PGPKGDRGPA-GVPGLLGDRGEPGEDGEP 348
Query: 164 SQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPP-----RAELGPPSLSQRFAQP 218
+ Q LG P +PG G GP G PP R + GP L+ + P
Sbjct: 349 GEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVP 408
Query: 219 GAPFGPSPLQRPGQGLPSLPPNTSPFPGPD--------------PGFPGPGGEDGGKPLN 264
G P PG P P + PG PG PG G G L
Sbjct: 409 GERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQ 468
Query: 265 PPASTAFPQEPHSGSPAAAVNGNQPSFP-PNSSGRGGGTPDANSLAPPGKAG--GGSGPQ 321
PA PQ G P +P P P GR G A PPG G G +GP
Sbjct: 469 GPAGPIGPQ----GLPGLK---GEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPP 521
Query: 322 PPPGLVYPCGA 332
PPG P GA
Sbjct: 522 GPPGPPGPPGA 532
Score = 72.0 bits (175), Expect = 9e-13
Identities = 103/333 (30%), Positives = 117/333 (35%), Gaps = 86/333 (25%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
P PP K G P PP P G GK GL GPA PP
Sbjct: 79 PGPPGKPGPRGPPGPPGFPGKPG--MGKPGLH-----------GQPGPA-------GPP- 117
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
G ++G A PP L V G Q G+ G+ PG G
Sbjct: 118 -----------------GFSRMGKAGPPGLPGKVGPPG---QPGLRGE--PGIR-----G 150
Query: 126 PQPLRRQP-PPFPPNPMGPAFNMPPQGPGYP-PPGNMNFPSQPFNQPLGQNFSPPSGQMM 183
Q LR P PP P P G P G P PPG F +P P G+
Sbjct: 151 DQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPG---FQGEP----------GPQGE-- 195
Query: 184 PGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLPPNTS 242
PGP G G +GQP G P PG P GP+ L +PG GLP P +
Sbjct: 196 PGPPGDRGLKGDNGVGQPGLP--GAPGQGGAPGPPGLP-GPAGLGKPGLDGLPGAPGDKG 252
Query: 243 PFPGPDPGFPGPGGEDGG-KPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGG 301
GP PG PGP GE G P PP +G P P P + G G
Sbjct: 253 E-SGP-PGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPG-------PQGPSGAKGEPGT 303
Query: 302 TPDANSLAP-----PGKAG--GGSGPQPPPGLV 327
+ P PG G G GP PGL+
Sbjct: 304 RGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLL 336
Score = 61.6 bits (148), Expect = 1e-09
Identities = 102/339 (30%), Positives = 119/339 (35%), Gaps = 51/339 (15%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQ-MKSPEKKRRKSNTQGP-AYSHLTEFAPP 64
P P G GP PP G G AGL + P + + T+GP T + P
Sbjct: 260 PGPRGEPGAVGPKGPPGVDGVG-VPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMP 318
Query: 65 --PTPMVDHLVASNP-FEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
P P D A P D G P G P P GG PPG G
Sbjct: 319 GLPGPKGDRGPAGVPGLLGDRGEP--GEDGEPGEQGPQGLGG-----------PPGLP-G 364
Query: 122 GGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP----PPGNMNFPSQPFNQPLGQNFSP 177
G P R+ PP P GP PP PG P G P P + L P
Sbjct: 365 SAGLPG---RRGPPGPKGEAGPGG--PPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGP 419
Query: 178 PSGQMMPGPVGGF-----GPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQ 232
P G P GF GP ++ +GQ + +LG P QPG GPS + PG
Sbjct: 420 P-GPTGPKGEPGFTGRPGGPGVAGALGQ--KGDLGLPG------QPGLR-GPSGI--PGL 467
Query: 233 GLPSLPPNTSPFPG--PDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPS 290
P+ P PG +PG PGP GE T P P S P
Sbjct: 468 QGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPP 527
Query: 291 FPPNSSGRGGGTPDANSLAPPGKAGG---GSGPQPPPGL 326
PP + G T A P G G G G +P GL
Sbjct: 528 GPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGL 566
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 81.3 bits (199), Expect = 1e-15
Identities = 104/343 (30%), Positives = 124/343 (36%), Gaps = 69/343 (20%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P + G GP P PP G GL E R + G E PP P
Sbjct: 1037 PPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGE--RGLTGLTGDK----GEPGPPGQP- 1089
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
G P G PP G P G + + G G S G G P P
Sbjct: 1090 --------------GYP--GATGPP--GLP----GIKGERGYTG------SAGEKGEPGP 1121
Query: 129 LRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQP-FNQPLGQNFSPPSGQMMPGPV 187
+ P PP P GP PQG G+ F QP F P G PP PG V
Sbjct: 1122 PGSEGLPGPPGPAGPRGERGPQG-NSGEKGDQGFQGQPGFPGPPG----PPG---FPGKV 1173
Query: 188 GGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLPPNTSPFPG 246
G GP P+AE G + PG+P P P PG QG P G
Sbjct: 1174 GSPGP-------PGPQAEKGSEGIRGPSGLPGSPGPPGP---PGIQG----PAGLDGLDG 1219
Query: 247 PDPGFPGPGGEDGGKPLNPPASTAFP----QEPHSGSPAAAVNGNQPSFPPNSSGRGGGT 302
D G PG G+ G P PP P + H G P + +P PP S+GR G
Sbjct: 1220 KD-GKPGLRGDPG--PAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPG-PPGSTGRPGAE 1275
Query: 303 PDANSLAPPGKAG--GGSGPQPPPGLVYPCGACRSEVNDDQDA 343
+ ++ P G+ G G GP PPG P G + D+ A
Sbjct: 1276 GEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGA 1318
Score = 75.9 bits (185), Expect = 6e-14
Identities = 115/365 (31%), Positives = 131/365 (35%), Gaps = 75/365 (20%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPT 66
P P EG GP P P +G+ G Q S EK + Q P + PP
Sbjct: 1119 PGPPGSEGLPGPPGPAGP------RGERGPQGNSGEKGDQGFQGQ-PGFP-----GPPGP 1166
Query: 67 PMVDHLVAS-NPFEDDFGAPKVGVAAPPFL-GSPVPFGGFRVQGGMAGQVPPGY-STGGG 123
P V S P G+ P L GSP P G +QG P G G
Sbjct: 1167 PGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQG------PAGLDGLDGK 1220
Query: 124 GGPQPLRRQP-PPFPPNPMG-PAFNMPPQGPGYP-PPGNMNFPSQPFNQPLGQNFSPPSG 180
G LR P P PP MG P F PG P P G+ P PP
Sbjct: 1221 DGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKP------------GPPGS 1268
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG--------- 231
PG G G M P P +GPP PG P GP+ + G
Sbjct: 1269 TGRPGAEGEPGAM-GPQGRPGPPGHVGPP------GPPGQP-GPAGISAVGLKGDRGATG 1320
Query: 232 -QGLPSLPPNTSPFPGPDPGFPGPGGEDG-----GKPLNPPASTAFPQEP-HSGSPAAAV 284
+GL LP PGP PG PGP GE G GK PP F P G P AA
Sbjct: 1321 ERGLAGLPGQ----PGP-PGHPGPPGEPGTDGAAGKE-GPPGKQGFYGPPGPKGDPGAAG 1374
Query: 285 NGNQPSFPPNSSGRGGGTPDANSL---APPGKAG-----GGSGPQPPPGLVYPCGACRSE 336
Q +G GG + S+ PPG AG G GP PGL G+
Sbjct: 1375 QKGQAG-EKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDM 1433
Query: 337 VNDDQ 341
VN D+
Sbjct: 1434 VNYDE 1438
Score = 60.1 bits (144), Expect = 4e-09
Identities = 77/267 (28%), Positives = 90/267 (33%), Gaps = 64/267 (23%)
Query: 92 PPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNM---- 147
P +GSP G + G + PPG G G P P+ PP FP P
Sbjct: 1014 PGCVGSPGLPGPPGLPGQRGEEGPPGMR-GSPGPPGPIG--PPGFPGAVGSPGLPGLQGE 1070
Query: 148 --------------PPQGPGYP----PPGNMNFPSQP-FNQPLGQNFSP--PSGQMMPGP 186
PP PGYP PPG + + G+ P P + +PGP
Sbjct: 1071 RGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGP 1130
Query: 187 VGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPG 246
G GP R E GP S G P G P PP FPG
Sbjct: 1131 PGPAGP----------RGERGPQGNSGEKGDQGFQGQP--------GFPG-PPGPPGFPG 1171
Query: 247 P--DPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPD 304
PG PGP E G + + P+ GSP P PP G G
Sbjct: 1172 KVGSPGPPGPQAEKGSEGIRGPSGLP-------GSPG-------PPGPPGIQGPAGLDGL 1217
Query: 305 ANSLAPPGKAGGGSGPQPPPGLVYPCG 331
PG G GP PPGL+ P G
Sbjct: 1218 DGKDGKPGLRGD-PGPAGPPGLMGPPG 1243
Score = 58.9 bits (141), Expect = 8e-09
Identities = 99/357 (27%), Positives = 117/357 (32%), Gaps = 83/357 (23%)
Query: 12 LEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDH 71
L G GP P P R G G+Q EK P S + H
Sbjct: 523 LPGKPGPKGEPGDPVPAR--GDPGIQGIKGEKGE-------PCLSCSSVVG------AQH 567
Query: 72 LVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRR 131
LV+S D G+P G+ P L G + + G G+ P S G
Sbjct: 568 LVSSTGASGDVGSPGFGL---PGLPGRAGVPGLKGEKGNFGEAGPAGSPG---------- 614
Query: 132 QPPPFPPNPMGPAFNMPPQG-PGYPPPGNMNFPSQPFNQ-----PLGQNFSP-PSGQMMP 184
PP P+GPA +G P P P N P G+ P P G +P
Sbjct: 615 -----PPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLP 669
Query: 185 GPVGGFGPM-------ISPTMGQPPR-AELGPPSLSQRFAQPGAPFGPSPLQRPGQGL-- 234
G G G + G P G P LS +PG P G G
Sbjct: 670 GKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLS---GEPGVQGPAGPKGEKGDGCTA 726
Query: 235 -PSLPPNTSPFPGPDPGFPGPGGEDG-------GKP--------LNPPASTAFPQEPHSG 278
PSL + G PG PGP GE G GKP PP EP G
Sbjct: 727 CPSLQGTVTDMAGR-PGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEP--G 783
Query: 279 SPAAAVNGNQ-----PSFP-----PNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPG 325
P V G Q P P P G G T + + PG G +GP PPG
Sbjct: 784 PPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPG-VKGATGPVGPPG 839
Score = 57.4 bits (137), Expect = 2e-08
Identities = 105/405 (25%), Positives = 131/405 (32%), Gaps = 104/405 (25%)
Query: 12 LEGGGGPAPPPA-----PPSTGRKQGKAGLQMKSPEK-----KRRKSNTQGPAYSHLTEF 61
++G GP PP PP +QG+ GL+ EK K P+ L
Sbjct: 828 VKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFS 887
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
P P + + S+ G P G+ PP G G+ GQ PG +
Sbjct: 888 GMPGAPGL--WMGSSWQPGPQGPP--GIPGPPGPPGVPGLQGVPGNNGLPGQ--PGLTAE 941
Query: 122 GGGGP--QPLRR-------QPPPFPPNPMGPAFNMPPQG-PGYPPPGNMNFPSQPFNQPL 171
G P Q L + Q P + QG PG P N +P
Sbjct: 942 LGSLPIEQHLLKSICGDCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERPR 1001
Query: 172 GQNFSPPSGQMMPGPVGGFGPMISPTMGQPP-----RAELGPPSLSQRFAQPGAPFGPSP 226
+ + + PG VG SP + PP R E GPP + G+P P P
Sbjct: 1002 AEEARGDNSEGDPGCVG------SPGLPGPPGLPGQRGEEGPPGMR------GSPGPPGP 1049
Query: 227 LQRPG-------QGLPSL-----------------PPNTSPFPGPD--PGFPGPGGEDG- 259
+ PG GLP L PP +PG PG PG GE G
Sbjct: 1050 IGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGY 1109
Query: 260 -------GKPLNPPASTAFPQEPHSGSPAA--AVNGN-----------QPSFP-----PN 294
G+P PP S P P P GN QP FP P
Sbjct: 1110 TGSAGEKGEP-GPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPG 1168
Query: 295 SSGRGGGTPDANSLAPPGKAG--------GGSGPQPPPGLVYPCG 331
G+ G A G G G GP PPG+ P G
Sbjct: 1169 FPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAG 1213
Score = 52.0 bits (123), Expect = 1e-06
Identities = 99/374 (26%), Positives = 114/374 (30%), Gaps = 80/374 (21%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQG-PAYSHLTEFAPP 64
P PP + G GP P P QG G + P + QG P T P
Sbjct: 782 PGPPGR--GVQGPQGEPGAPGLPGIQGLPG--PRGPPGPTGEKGAQGSPGVKGATGPVGP 837
Query: 65 PTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSP-----------VPFGGFRVQGGMAGQ 113
P V S P D + G+ P P P G + GM G
Sbjct: 838 PGASV-----SGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGA 892
Query: 114 VPPGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP----PGNMNFPSQPF-- 167
PG G P P Q PP P P GP PG P PGN P QP
Sbjct: 893 --PGLWMGSSWQPGP---QGPPGIPGPPGP--------PGVPGLQGVPGNNGLPGQPGLT 939
Query: 168 ----NQPLGQNF-------------SPPSGQMMPGPVGGFGPMISPTMG---------QP 201
+ P+ Q+ + P + G G G P + +
Sbjct: 940 AELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLER 999
Query: 202 PRAELGPPSLSQRFAQPG---APFGPSPLQRPGQGLPSLPPNTSPFPGP-----DPGFPG 253
PRAE S+ PG +P P P PGQ PP PGP PGFPG
Sbjct: 1000 PRAEEARGDNSE--GDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPG 1057
Query: 254 PGGEDGGKPLNPPAS----TAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLA 309
G G L T EP P P G G T A
Sbjct: 1058 AVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKG 1117
Query: 310 PPGKAGGGSGPQPP 323
PG G P PP
Sbjct: 1118 EPGPPGSEGLPGPP 1131
Score = 51.2 bits (121), Expect = 2e-06
Identities = 96/337 (28%), Positives = 118/337 (35%), Gaps = 44/337 (13%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
G GPA P PP G G + + E SN Q P P +
Sbjct: 605 GEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGD----VRVVALPGPSGEK-- 658
Query: 74 ASNPFEDDFGAP-KVGVAAPPFL-------GSPVPFG--GFRVQGGMAGQVPPGYSTGGG 123
P FG P K G A L G+P G G + G++G+ PG G
Sbjct: 659 -GEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGE--PGVQ--GP 713
Query: 124 GGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSP--PSGQ 181
GP+ + P+ G +M + PG P P P + +P G+ P P Q
Sbjct: 714 AGPKGEKGDGCTACPSLQGTVTDMAGR-PGQPGPKGEQGP-EGVGRP-GKPGQPGLPGVQ 770
Query: 182 MMPGPVGGFGPMISPTMG-QPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSLPP 239
PG G G P G Q P+ E G P L PG P P G QG P +
Sbjct: 771 GPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKG 830
Query: 240 NTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEP--HSGSPAAAVNGNQPSFPPNSSG 297
T P P GP G DG + T + P G P + S P
Sbjct: 831 ATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEP------GECSCPSQGDL 884
Query: 298 RGGGTPDANSLAPPGKAGGGS---GPQPPPGLVYPCG 331
G P A PG G S GPQ PPG+ P G
Sbjct: 885 IFSGMPGA-----PGLWMGSSWQPGPQGPPGIPGPPG 916
Score = 47.0 bits (110), Expect = 3e-05
Identities = 72/242 (29%), Positives = 85/242 (35%), Gaps = 36/242 (14%)
Query: 103 GFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMGP--AFNMP-PQGPGYPP--P 157
GF G+AG+ P G G P P PP P G + +P +GPG P P
Sbjct: 438 GFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKP 497
Query: 158 GNMNFPSQPF----NQPLG-QNFSPPSGQMMPGPVGGFGPMISPTMGQPP----RAELGP 208
G P P G QNF G+ PGP G G + P G P + E G
Sbjct: 498 GVKGEKGDPCEVCPTLPEGFQNFVGLPGK--PGPKGEPGDPV-PARGDPGIQGIKGEKGE 554
Query: 209 PSLS-------QRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGK 261
P LS Q G + PG GLP LP G PG GE G
Sbjct: 555 PCLSCSSVVGAQHLVSSTGASG--DVGSPGFGLPGLPGRA--------GVPGLKGEKGNF 604
Query: 262 PLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQ 321
PA + P P + G P S G D +A PG +G P
Sbjct: 605 GEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDG--DVRVVALPGPSGEKGEPG 662
Query: 322 PP 323
PP
Sbjct: 663 PP 664
Score = 47.0 bits (110), Expect = 3e-05
Identities = 83/329 (25%), Positives = 105/329 (31%), Gaps = 57/329 (17%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P G G PP PP + G AG+ + R + +G L P P
Sbjct: 1283 PQGRPGPPGHVGPPGPPG---QPGPAGISAVGLKGDRGATGERG-----LAGLPGQPGPP 1334
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFG--GFRVQGGMAGQVPPGYSTGGGGGP 126
P D + F G P P G G Q G AG+ G GGP
Sbjct: 1335 GHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKG---RAGMPGGP 1391
Query: 127 QPLRRQPPPFPPNPMG----PAFNMPPQGPGYP-PPGNM----------NFPSQPFNQPL 171
P PP P G P P PG P PG+M F Q +
Sbjct: 1392 GKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMF 1451
Query: 172 GQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFG---PSPLQ 228
+ + + +M F ++ G+P GPP +PGAP P +
Sbjct: 1452 DERMAYYTSRMQ------FPMEMAAAPGRP-----GPPGKDGAPGRPGAPGSPGLPGQIG 1500
Query: 229 RPG-QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEP-HSGSPAAAVNG 286
R G QGLP + G PG GE G + P P G P G
Sbjct: 1501 REGRQGLPGV-----------RGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMG 1549
Query: 287 NQPSFPPNSSGRGGGTPDANSLAPPGKAG 315
+ P G G + PGKAG
Sbjct: 1550 --ATGPMGQQGIPGIPGPPGPMGQPGKAG 1576
Score = 45.4 bits (106), Expect = 9e-05
Identities = 85/328 (25%), Positives = 107/328 (32%), Gaps = 41/328 (12%)
Query: 9 PDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPM 68
P +GG G P PP + ++G G +GP A P+ +
Sbjct: 332 PSGPKGGKGERGLPGPPGSKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGL 391
Query: 69 VDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQP 128
+ GV P G G V G + PG+ GP+
Sbjct: 392 PGSTGEKGQKGEKGDGGIKGVPGKP--GRDGRPGEICVIGPKGQKGDPGFV-----GPEG 444
Query: 129 LRRQP-PPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPV 187
L +P PP P P G P PG PP P G S SG +PG
Sbjct: 445 LAGEPGPPGLPGPPGIGLPGTPGDPGGPP------------GPKGDKGS--SG--IPGKE 488
Query: 188 GGFG----PMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSP 243
G G P + G P P Q F G P P P PG +P+
Sbjct: 489 GPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFV--GLPGKPGPKGEPGDPVPA------- 539
Query: 244 FPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTP 303
DPG G GE G+P +S Q S + A+ G+ P GR G
Sbjct: 540 --RGDPGIQGIKGEK-GEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPG 596
Query: 304 DANSLAPPGKAGGGSGPQPPPGLVYPCG 331
G+AG P PPG V P G
Sbjct: 597 LKGEKGNFGEAGPAGSP-GPPGPVGPAG 623
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 78.6 bits (192), Expect = 1e-14
Identities = 95/326 (29%), Positives = 116/326 (35%), Gaps = 39/326 (11%)
Query: 15 GGGPAPPPA--PPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHL------TEFAPPPT 66
G GPAPP A P + + L M + Q P SH T PPP
Sbjct: 850 GVGPAPPVAGLPSAPPPQFSGPELAMAVRPATTTVDSIQAPIPSHTAPRPNPTPAPPPPC 909
Query: 67 -PMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGG 125
P+ P+ GA K + A S +P G + G Q P G
Sbjct: 910 FPVPPPQPLPTPYTYPAGA-KQPIPAQHHFSSGIPAGFPAPRIGPQPQPHPQPHPSQAFG 968
Query: 126 PQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPG 185
PQP P P P+ PPQ PG PP +P P LGQ P Q+ PG
Sbjct: 969 PQP------PQQPLPLQHPHLFPPQAPGLLPP-QSPYPYAPQPGVLGQPPPPLHTQLYPG 1021
Query: 186 PV-------GGFGPMISPTMGQPPRAEL--GPPSLSQRFAQPGAPFGPSPLQRPGQGLPS 236
P G P SP QPP L GP ++ AP GQ PS
Sbjct: 1022 PAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPS 1081
Query: 237 LPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSS 296
P+ P P P PG PGP P PPA+ P + A ++ + S +
Sbjct: 1082 --PHLVPSPAPSPG-PGP------VPPRPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQ 1132
Query: 297 GRGGGTPDANSLAPPGKAGGGSGPQP 322
GGG P L P K G +P
Sbjct: 1133 SPGGGQP----LLQPTKVDAAEGRRP 1154
Score = 70.1 bits (170), Expect = 3e-12
Identities = 99/362 (27%), Positives = 120/362 (33%), Gaps = 61/362 (16%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P G GP P G G L GPA AP
Sbjct: 772 PPSPFPSSTGPGPHYLSGPLPPGTYSGPTQLIQPRAPGPHAMPVAPGPALYP----APAY 827
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVA-APPFLG----SPVPFGGFRVQGGMAGQVPPGYST 120
TP + + S+P +P VGV APP G P F G +A V P +T
Sbjct: 828 TPELGLVPRSSPQHGVVSSPYVGVGPAPPVAGLPSAPPPQFSGPE----LAMAVRPATTT 883
Query: 121 GGG-GGPQPLRRQPPPFP-PNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPP 178
P P P P P P P P F +PP P P+ P+ P G P
Sbjct: 884 VDSIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQP---------LPT-PYTYPAGAKQPIP 933
Query: 179 SGQMMPG--PVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPS 236
+ P G P I P P+ P SQ F P P P PLQ P P
Sbjct: 934 AQHHFSSGIPAGFPAPRIGPQPQPHPQ-----PHPSQAFG-PQPPQQPLPLQHPHLFPPQ 987
Query: 237 LP---PNTSPFP-GPDPG-------------FPGPGGE-----DGGKPLNPPASTAFPQE 274
P P SP+P P PG +PGP + G P P P
Sbjct: 988 APGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHP 1047
Query: 275 PHSGSPAAAVNGNQPSFPP------NSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVY 328
P + PA + P P +S+G+ +P P G P+PP
Sbjct: 1048 PLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPP 1107
Query: 329 PC 330
PC
Sbjct: 1108 PC 1109
Score = 57.0 bits (136), Expect = 3e-08
Identities = 64/213 (30%), Positives = 79/213 (37%), Gaps = 26/213 (12%)
Query: 123 GGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQM 182
G P+ LR PP P +P G P ++FP PF G SG +
Sbjct: 739 GDPPEELRSLPPDMVAGP-----RLPDTFLGSATP--LHFPPSPFPSSTGPGPHYLSGPL 791
Query: 183 MPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGL-PSLPPNT 241
PG G PT PRA GP ++ PG P+P P GL P P
Sbjct: 792 PPGTYSG------PTQLIQPRAP-GPHAMP---VAPGPALYPAPAYTPELGLVPRSSPQH 841
Query: 242 SPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPA-AAVNGNQPSFPPNSSGRGG 300
P G GP G P PP + P+ + PA V+ Q P +++ R
Sbjct: 842 GVVSSPYVGV-GPAPPVAGLPSAPPPQFSGPELAMAVRPATTTVDSIQAPIPSHTAPRPN 900
Query: 301 GTPDANSLAPPGKAGGGSGPQP-PPGLVYPCGA 332
TP APP PQP P YP GA
Sbjct: 901 PTP-----APPPPCFPVPPPQPLPTPYTYPAGA 928
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 78.2 bits (191), Expect = 1e-14
Identities = 104/374 (27%), Positives = 131/374 (35%), Gaps = 79/374 (21%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P L G PP PP +G GL + P+ ++ + QGP P P
Sbjct: 196 PPGPPGLMG------PPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP---------PGP 240
Query: 66 TPMVDHLVASNPFEDDF-----GAP-KVGVAAPPFL-GSPVPFGGFRVQGGMAGQ----- 113
+ P + +F G P G PP + G P P GG + + G G+
Sbjct: 241 PGQISE--QKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 114 ------------VP-----PGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP 156
+P PGY G G ++ PP P G P G
Sbjct: 299 KPGKDGENGQPGIPGLPGDPGY-PGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGE 357
Query: 157 PGNMNFPSQP----------FNQPLGQNFSPPSGQMM--PGPVGGFGPMISPTMGQPPRA 204
GN+ P P P G PP +M PGP G G PP
Sbjct: 358 KGNIGLPGLPGEKGERGFPGIQGPPGLP-GPPGAAVMGPPGPPGFPGERGQKGDEGPPGI 416
Query: 205 EL-GPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPL 263
+ GPP L QPGAP P P PG P +PP+ +PG PGP G G K L
Sbjct: 417 SIPGPPGLD---GQPGAPGLPGP---PGPAGPHIPPSDEIC---EPGPPGPPGSPGDKGL 467
Query: 264 NPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG-----GGS 318
+ G G S PP G G SL PG+ G G +
Sbjct: 468 QGEQGV----KGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGAT 523
Query: 319 GPQPPPGLVYPCGA 332
GP+ PG+ GA
Sbjct: 524 GPKGLPGIPGAPGA 537
Score = 76.3 bits (186), Expect = 5e-14
Identities = 102/341 (29%), Positives = 121/341 (35%), Gaps = 80/341 (23%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P +G G A P P +G G + P K N L P
Sbjct: 627 PPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLP--GDPG 684
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPP----FLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
P L + + G P +G+ PP F G P P G G + + PPG
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPG---- 740
Query: 122 GGGGPQPLRRQPPPFPPNPMGPAFNMP--PQGPGYP-------PPGNMNFPSQPFNQPLG 172
PP FP P F +P P PG P P G+ FP P
Sbjct: 741 -----------PPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP------ 783
Query: 173 QNFSPPSG---QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ--PGAPFGPSPL 227
PP +PGP G GP GQP +GPP L Q PG P P P+
Sbjct: 784 ---GPPGRTGLDGLPGPKGDVGPN-----GQP--GPMGPPGLPGIGVQGPPGPPGIPGPI 833
Query: 228 QRPG-QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNG 286
+PG G+P + P PG D PGP GE G S P G+P
Sbjct: 834 GQPGLHGIPGEKGDPGP-PGLD--VPGPPGERG--------SPGIP-----GAPG----- 872
Query: 287 NQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
P PP S G G A + PG G G GP PPG
Sbjct: 873 --PIGPPGSPGLPG---KAGASGFPGTKGEMGMMGPPGPPG 908
Score = 75.1 bits (183), Expect = 1e-13
Identities = 104/364 (28%), Positives = 120/364 (32%), Gaps = 69/364 (18%)
Query: 16 GGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLVA- 74
G P P AP G K G+ G + P K K P L P TP D L
Sbjct: 530 GIPGAPGAPGFPGSK-GEPGDILTFPGMKGDKGELGSPGAPGLPGL--PGTPGQDGLPGL 586
Query: 75 --------SNPFEDDFGAP----------KVGVAAPPFLGSPVPFGGFRVQGGMAGQVPP 116
F+ + G P +G PP G P P G +QG P
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQP 646
Query: 117 GYSTGGGGGPQPLRRQP--PPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQN 174
G G G P QP P P NP P PG P G P P ++ G+
Sbjct: 647 GIP-GPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLP--GQPGLPGIPGSK--GEP 701
Query: 175 FSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGL 234
P G +PGP G P P + PP A G P PG P P P PG L
Sbjct: 702 GIPGIG--LPGPPG---PKGFPGIPGPPGAP-GTPGRIGLEGPPGPPGFPGPKGEPGFAL 755
Query: 235 PSLPPNTSPFPG--------PDPGFPGPGGEDGGK-------------------PLNPPA 267
P PP PG D GFPGP G G P+ PP
Sbjct: 756 PG-PPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG 814
Query: 268 STAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGG-GTPDANSLAPPGKAG-----GGSGPQ 321
+ G P QP +G G P + PPG+ G G GP
Sbjct: 815 LPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPI 874
Query: 322 PPPG 325
PPG
Sbjct: 875 GPPG 878
Score = 74.7 bits (182), Expect = 1e-13
Identities = 103/352 (29%), Positives = 124/352 (35%), Gaps = 50/352 (14%)
Query: 7 PPPDKLEGGGGPAPPPAPPST----GRKQGKAGLQMKS---PEKKRRKSNTQGPAYSHLT 59
P P +EG GP+ P P + G+K K + S P K P Y
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGY---- 1090
Query: 60 EFAPPPTPMVDHLVASNPFEDDFGAP--KVGVAAPPFLGSPVPFGGFRVQG-----GMAG 112
P P + V G P K P F G+P P G + G G+ G
Sbjct: 1091 ----PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPG 1146
Query: 113 QVPPGYSTGGG--GGPQPLRRQPPPFPPNPMGPAFNM-PPQGPGYPPPGNMNFPSQPFNQ 169
+ PG GGG G P P + P GPA P PG+ PG P +
Sbjct: 1147 E--PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQK 1204
Query: 170 PLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQR 229
G P +PGP G G P + PP GPP PG P P
Sbjct: 1205 GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPP----GPP------GSPG-PALEGPKGN 1253
Query: 230 PG-QGLPSLPPNT--SPFPGPD--PGFPGPGGEDGGKPLNPPASTAFPQEP----HSGSP 280
PG QG P P T PGP+ PG PG GG G K P P P G P
Sbjct: 1254 PGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEK--GNPGQPGLPGLPGLKGDQGPP 1311
Query: 281 AAAVNGNQPSFPPNSSGRG-GGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
N +P G G P + P G +GP+ PGL+ P G
Sbjct: 1312 GLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPG 1363
Score = 74.3 bits (181), Expect = 2e-13
Identities = 98/333 (29%), Positives = 121/333 (36%), Gaps = 40/333 (12%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
P PP G P PP AP + GR + ++ P +G L PP
Sbjct: 709 PGPPGPKGFPGIPGPPGAPGTPGR------IGLEGPPGPPGFPGPKGEPGFALP--GPPG 760
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPP----FLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
P + + + D G P G PP G P P G G PPG
Sbjct: 761 PPGLPGFKGALGPKGDRGFP--GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGI 818
Query: 122 GGGGPQPLRRQPPPFPPNPMG-PAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
G GP PP P P+G P + P G P P ++ P P G+ SP
Sbjct: 819 GVQGPPG-----PPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP-----GERGSPG-- 866
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAEL-GPPSLSQRFAQPGAPFGPSPLQRPGQ-GLPSLP 238
+PG G GP SP G P +A G P G P P PL PG+ G+P L
Sbjct: 867 --IPGAPGPIGPPGSP--GLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 239 PNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPH-SGSPAAAVNGNQPSFPPNSSG 297
+ G PG PGP GE G K P +P+ GS P P S
Sbjct: 923 GDDG-LQG-QPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGP 980
Query: 298 RG----GGTPDANSLAPPGKAGGGSGPQPPPGL 326
+G G P L+ G GP+ PGL
Sbjct: 981 KGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGL 1013
Score = 73.2 bits (178), Expect = 4e-13
Identities = 104/341 (30%), Positives = 118/341 (34%), Gaps = 61/341 (17%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
GGGG P PP K G+ G+ P +K P + + PP P +
Sbjct: 1152 GGGGHPGQPGPPGEKGKPGQDGI----PGPAGQKGEPGQPGFGNP---GPPGLPGLSGQ- 1203
Query: 74 ASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQ---PLR 130
+ D G P G+ P L P GF G+ G PPG G GP P
Sbjct: 1204 -----KGDGGLP--GIPGNPGLPGPKGEPGFHGFPGVQG--PPG--PPGSPGPALEGPKG 1252
Query: 131 RQPPPFPPNPMGPAFNMPPQGPGYPP--PGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVG 188
P PP GP GP PP PGN + N GQ P +PG G
Sbjct: 1253 NPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNP--GQ----PGLPGLPGLKG 1306
Query: 189 GFGPMISPTMGQPPRAEL----GPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPF 244
GP G P R L G P L PG P P PG P P
Sbjct: 1307 DQGP--PGLQGNPGRPGLNGMKGDPGLP---GVPGFPGMKGPSGVPGSAGPEGEPGLIGP 1361
Query: 245 PGPDPGFPGPGGE------DGGKPLNP--PASTAFP--QEPH-----SGSPAAAVNGNQP 289
PGP PG PGP G+ D G P P P P Q P +G P P
Sbjct: 1362 PGP-PGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP 1420
Query: 290 SFPPNSSGRGG-----GTPDANSLAPPGKAGGGSGPQPPPG 325
F + GR G G P L P G GP PPG
Sbjct: 1421 GFD-GAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPG 1460
Score = 71.6 bits (174), Expect = 1e-12
Identities = 116/431 (26%), Positives = 136/431 (31%), Gaps = 111/431 (25%)
Query: 7 PPPDKLEGGGGPAPPPAPPS----------TGRKQGKAGLQMKSPEKKRRK-SNTQGP-- 53
P D +G G PP PP T ++G GL EK R QGP
Sbjct: 324 PGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG 383
Query: 54 --AYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMA 111
PP P + D G P + + PP L G G A
Sbjct: 384 LPGPPGAAVMGPPGPP---GFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 112 GQV--------------PPGYSTGGGG--GPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP 155
G PPG S G G G Q ++ N +G + PP PG P
Sbjct: 441 GPHIPPSDEICEPGPPGPPG-SPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLP 499
Query: 156 ----PPGNMNFPSQPFNQ-------PLGQNFSP--PSGQMMPGPVGGFGPMISPTMGQPP 202
PPG++ FP Q + P G P P PG G G +++ +
Sbjct: 500 GLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD 559
Query: 203 RAELGPPS------LSQRFAQPGAPFGPSPLQRPG-------------QGLPSLPPNTSP 243
+ ELG P L Q G P P P PG GLP LP N P
Sbjct: 560 KGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGP 619
Query: 244 F-------PGP--------------DPGFPGPGGEDGGKPLNPPASTAFPQEP----HSG 278
PGP PG PGP G D G+ + P P P G
Sbjct: 620 MGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKG-DPGQTITQPGKPGLPGNPGRDGDVG 678
Query: 279 SPAAAVNGNQPSFP--PNSSGRGG-------GTPDANSL----APPGKAG-----GGSGP 320
P QP P P S G G G P PPG G G GP
Sbjct: 679 LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGP 738
Query: 321 QPPPGLVYPCG 331
PPG P G
Sbjct: 739 PGPPGFPGPKG 749
Score = 70.9 bits (172), Expect = 2e-12
Identities = 111/395 (28%), Positives = 126/395 (31%), Gaps = 82/395 (20%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPT 66
P L G G PP P G+ GL P + G E P P+
Sbjct: 990 PGQPGLSGQPGLPGPPGPKGNPGLPGQPGLI--GPPGLKGTIGDMGFPGPQGVEGPPGPS 1047
Query: 67 -----PMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQV-PPGYST 120
P L + D G +G+ P G+ G+ G V PG
Sbjct: 1048 GVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLP- 1106
Query: 121 GGGGGPQPLRRQP--PPFP--PNPMGP-AFNMPPQGPGYP----PPGNMNFPSQPFNQPL 171
G G + QP P FP P P GP + PP PG P P G P QP P
Sbjct: 1107 -GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP--GPP 1163
Query: 172 GQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ---------PGAPF 222
G+ P +PGP G G P G P GPP L Q PG P
Sbjct: 1164 GEK-GKPGQDGIPGPAGQKGEPGQPGFGNP-----GPPGLPGLSGQKGDGGLPGIPGNPG 1217
Query: 223 GPSPLQRPG-QGLPSLPPNTSPFPGPDPGFPGPGGEDGGK-PLNPPASTAFPQEPH-SGS 279
P P PG G P + P P P GP G G + P P T F P G
Sbjct: 1218 LPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGP 1277
Query: 280 PAAAVNGN---------QPSFP--PNSSGRGG--------GTPDANSL------------ 308
P NG QP P P G G G P N +
Sbjct: 1278 PGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGF 1337
Query: 309 -------APPGKAG-----GGSGPQPPPGLVYPCG 331
PG AG G GP PPGL P G
Sbjct: 1338 PGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSG 1372
Score = 68.9 bits (167), Expect = 8e-12
Identities = 88/291 (30%), Positives = 102/291 (35%), Gaps = 64/291 (21%)
Query: 81 DFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPL-----RRQPPP 135
D G P G P + P GF G+ G PG+ G GPQ + +
Sbjct: 79 DDGIP--GPPGPKGIRGPPGLPGFPGTPGLPGM--PGHD--GAPGPQGIPGCNGTKGERG 132
Query: 136 FPPNPMGPAFNMPPQGPGYP----------------PPGNMNFPSQPFNQPLGQNFSPPS 179
FP +P P PP PG P P GN +P P Q L P
Sbjct: 133 FPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPG 192
Query: 180 GQMMPGPVGGFGPMISP-------TMG---QPPRAELGPPSLSQRFAQPGAPFGPSPLQR 229
PGP G GP P MG Q P+ E G L PG P S +R
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQ---GPPGPPGQISEQKR 249
Query: 230 P-----GQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEP-HSGSPAAA 283
P +G LP + P PGP PG GP G GG+ EP G P
Sbjct: 250 PIDVEFQKGDQGLPGDRGP-PGP-PGIRGPPGPPGGE----KGEKGEQGEPGKRGKPGKD 303
Query: 284 VNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG-----GGSGPQPPPGLVYP 329
QP P G D PG+ G G +GP PPGLV P
Sbjct: 304 GENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIP 347
Score = 67.0 bits (162), Expect = 3e-11
Identities = 102/368 (27%), Positives = 127/368 (34%), Gaps = 77/368 (20%)
Query: 2 AASAPPPPDKLEGGGGPAPP------PAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGP-- 53
A PP P L G G P P PP + G GL P+ + GP
Sbjct: 754 ALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLP--GPKGDVGPNGQPGPMG 811
Query: 54 --AYSHLTEFAPPPTPMVDHLVASNPF------EDDFGAPKVGVAAPP-------FLGSP 98
+ PP P + + + D G P + V PP G+P
Sbjct: 812 PPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAP 871
Query: 99 VPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMG-PAFNMPP-------- 149
P G G G ++G G + PP PP P+G P + P
Sbjct: 872 GPIG----PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927
Query: 150 QG-PGYPPP-------GNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQP 201
QG PG P P G P P P+ N G+ + G + P Q
Sbjct: 928 QGQPGLPGPTGEKGSKGEPGLPGPP--GPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQG 985
Query: 202 PRAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSL--PPNTSPFPGPDPGFPGPGGED 258
+ G P LS QPG P P P PG G P L PP G D GFPGP G +
Sbjct: 986 LPGDPGQPGLS---GQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG-DMGFPGPQGVE 1041
Query: 259 GGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGS 318
G PP + P +P GSP P G G P +S+ PG
Sbjct: 1042 G-----PPGPSGVPGQP--GSPGL----------PGQKG-DKGDPGISSIGLPGL----P 1079
Query: 319 GPQPPPGL 326
GP+ PGL
Sbjct: 1080 GPKGEPGL 1087
Score = 53.1 bits (126), Expect = 4e-07
Identities = 62/180 (34%), Positives = 67/180 (37%), Gaps = 26/180 (14%)
Query: 158 GNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQP-PRAELGPPSLSQRFA 216
G FP + L F P G PGP G G P G P P+ GPP L
Sbjct: 48 GERGFPGLEGHPGL-PGFPGPEGP--PGPRGQKGDDGIP--GPPGPKGIRGPPGLPGFPG 102
Query: 217 QPGAPFGPSPLQRPG-QGLPSLPPNTSP--FPGPDPGFPGPGGEDGGKPLNPPASTAFPQ 273
PG P P PG QG+P FPG PGFPG G G PP
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPG-SPGFPGLQGPPG-----PPGIPGMKG 156
Query: 274 EPHS--GSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
EP S S GN P +P G P L P G GP PPGL+ P G
Sbjct: 157 EPGSIIMSSLPGPKGN-PGYP--------GPPGIQGLPGPTGIPGPIGPPGPPGLMGPPG 207
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 78.2 bits (191), Expect = 1e-14
Identities = 104/374 (27%), Positives = 131/374 (35%), Gaps = 79/374 (21%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P L G PP PP +G GL + P+ ++ + QGP P P
Sbjct: 196 PPGPPGLMG------PPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP---------PGP 240
Query: 66 TPMVDHLVASNPFEDDF-----GAP-KVGVAAPPFL-GSPVPFGGFRVQGGMAGQ----- 113
+ P + +F G P G PP + G P P GG + + G G+
Sbjct: 241 PGQISE--QKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 114 ------------VP-----PGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP 156
+P PGY G G ++ PP P G P G
Sbjct: 299 KPGKDGENGQPGIPGLPGDPGY-PGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGE 357
Query: 157 PGNMNFPSQP----------FNQPLGQNFSPPSGQMM--PGPVGGFGPMISPTMGQPPRA 204
GN+ P P P G PP +M PGP G G PP
Sbjct: 358 KGNIGLPGLPGEKGERGFPGIQGPPGLP-GPPGAAVMGPPGPPGFPGERGQKGDEGPPGI 416
Query: 205 EL-GPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPL 263
+ GPP L QPGAP P P PG P +PP+ +PG PGP G G K L
Sbjct: 417 SIPGPPGLD---GQPGAPGLPGP---PGPAGPHIPPSDEIC---EPGPPGPPGSPGDKGL 467
Query: 264 NPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG-----GGS 318
+ G G S PP G G SL PG+ G G +
Sbjct: 468 QGEQGV----KGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGAT 523
Query: 319 GPQPPPGLVYPCGA 332
GP+ PG+ GA
Sbjct: 524 GPKGLPGIPGAPGA 537
Score = 77.0 bits (188), Expect = 3e-14
Identities = 102/347 (29%), Positives = 120/347 (34%), Gaps = 46/347 (13%)
Query: 7 PPPDKLEGGGGPAPPPAPPST----GRKQGKAGLQMKS---PEKKRRKSNTQGPAYSHLT 59
P P +EG GP+ P P + G+K K + S P K P Y
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGY---- 1090
Query: 60 EFAPPPTPMVDHLVASNPFEDDFGAP--KVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPG 117
P P + V G P K P F G+P P G + G PG
Sbjct: 1091 ----PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPG 1146
Query: 118 YSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP-PPGNMNFPSQP-FNQPLGQNF 175
GGG P + P PP G P G P P G P QP F P
Sbjct: 1147 EPGPVGGGGHPGQ----PGPPGEKGK-----PGQDGIPGPAGQKGEPGQPGFGNP----- 1192
Query: 176 SPPSGQMMPGPVGGFG-PMISPTMGQP-PRAELGPPSLSQRFAQPGAPFGPSP-LQRP-G 231
PP + G G G P I G P P+ E G PG P P P L+ P G
Sbjct: 1193 GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKG 1252
Query: 232 QGLPSLPPNTSPFPGPD--PGFPGPGGEDGGKPLNPPASTAFPQEP----HSGSPAAAVN 285
P PP PGP+ PG PG GG G K P P P G P N
Sbjct: 1253 NPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEK--GNPGQPGLPGLPGLKGDQGPPGLQGN 1310
Query: 286 GNQPSFPPNSSGRG-GGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
+P G G P + P G +GP+ PGL+ P G
Sbjct: 1311 PGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPG 1357
Score = 76.3 bits (186), Expect = 5e-14
Identities = 102/341 (29%), Positives = 121/341 (35%), Gaps = 80/341 (23%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P +G G A P P +G G + P K N L P
Sbjct: 627 PPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLP--GDPG 684
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPP----FLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
P L + + G P +G+ PP F G P P G G + + PPG
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPG---- 740
Query: 122 GGGGPQPLRRQPPPFPPNPMGPAFNMP--PQGPGYP-------PPGNMNFPSQPFNQPLG 172
PP FP P F +P P PG P P G+ FP P
Sbjct: 741 -----------PPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP------ 783
Query: 173 QNFSPPSG---QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ--PGAPFGPSPL 227
PP +PGP G GP GQP +GPP L Q PG P P P+
Sbjct: 784 ---GPPGRTGLDGLPGPKGDVGPN-----GQP--GPMGPPGLPGIGVQGPPGPPGIPGPI 833
Query: 228 QRPG-QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNG 286
+PG G+P + P PG D PGP GE G S P G+P
Sbjct: 834 GQPGLHGIPGEKGDPGP-PGLD--VPGPPGERG--------SPGIP-----GAPG----- 872
Query: 287 NQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
P PP S G G A + PG G G GP PPG
Sbjct: 873 --PIGPPGSPGLPG---KAGASGFPGTKGEMGMMGPPGPPG 908
Score = 75.1 bits (183), Expect = 1e-13
Identities = 104/364 (28%), Positives = 120/364 (32%), Gaps = 69/364 (18%)
Query: 16 GGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLVA- 74
G P P AP G K G+ G + P K K P L P TP D L
Sbjct: 530 GIPGAPGAPGFPGSK-GEPGDILTFPGMKGDKGELGSPGAPGLPGL--PGTPGQDGLPGL 586
Query: 75 --------SNPFEDDFGAP----------KVGVAAPPFLGSPVPFGGFRVQGGMAGQVPP 116
F+ + G P +G PP G P P G +QG P
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQP 646
Query: 117 GYSTGGGGGPQPLRRQP--PPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQN 174
G G G P QP P P NP P PG P G P P ++ G+
Sbjct: 647 GIP-GPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLP--GQPGLPGIPGSK--GEP 701
Query: 175 FSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGL 234
P G +PGP G P P + PP A G P PG P P P PG L
Sbjct: 702 GIPGIG--LPGPPG---PKGFPGIPGPPGAP-GTPGRIGLEGPPGPPGFPGPKGEPGFAL 755
Query: 235 PSLPPNTSPFPG--------PDPGFPGPGGEDGGK-------------------PLNPPA 267
P PP PG D GFPGP G G P+ PP
Sbjct: 756 PG-PPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG 814
Query: 268 STAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGG-GTPDANSLAPPGKAG-----GGSGPQ 321
+ G P QP +G G P + PPG+ G G GP
Sbjct: 815 LPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPI 874
Query: 322 PPPG 325
PPG
Sbjct: 875 GPPG 878
Score = 74.3 bits (181), Expect = 2e-13
Identities = 98/333 (29%), Positives = 121/333 (36%), Gaps = 40/333 (12%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
P PP G P PP AP + GR + ++ P +G L PP
Sbjct: 709 PGPPGPKGFPGIPGPPGAPGTPGR------IGLEGPPGPPGFPGPKGEPGFALP--GPPG 760
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPP----FLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
P + + + D G P G PP G P P G G PPG
Sbjct: 761 PPGLPGFKGALGPKGDRGFP--GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGI 818
Query: 122 GGGGPQPLRRQPPPFPPNPMG-PAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
G GP PP P P+G P + P G P P ++ P P G+ SP
Sbjct: 819 GVQGPPG-----PPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP-----GERGSPG-- 866
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAEL-GPPSLSQRFAQPGAPFGPSPLQRPGQ-GLPSLP 238
+PG G GP SP G P +A G P G P P PL PG+ G+P L
Sbjct: 867 --IPGAPGPIGPPGSP--GLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 239 PNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPH-SGSPAAAVNGNQPSFPPNSSG 297
+ G PG PGP GE G K P +P+ GS P P S
Sbjct: 923 GDDG-LQG-QPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGP 980
Query: 298 RG----GGTPDANSLAPPGKAGGGSGPQPPPGL 326
+G G P L+ G GP+ PGL
Sbjct: 981 KGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGL 1013
Score = 74.3 bits (181), Expect = 2e-13
Identities = 104/347 (29%), Positives = 120/347 (34%), Gaps = 56/347 (16%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPT 66
P L G G PP P G+ GL P + G E P P+
Sbjct: 990 PGQPGLSGQPGLPGPPGPKGNPGLPGQPGLI--GPPGLKGTIGDMGFPGPQGVEGPPGPS 1047
Query: 67 -----PMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQV-PPGYST 120
P L + D G +G+ P G+ G+ G V PG
Sbjct: 1048 GVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLP- 1106
Query: 121 GGGGGPQPLRRQP--PPFP--PNPMGP-AFNMPPQGPGYP----PPGNMNFPSQPFNQPL 171
G G + QP P FP P P GP + PP PG P P G P QP P
Sbjct: 1107 -GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP--GPP 1163
Query: 172 GQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPG 231
G+ P +PGP G G P G P GPP L Q G
Sbjct: 1164 GEK-GKPGQDGIPGPAGQKGEPGQPGFGNP-----GPPGLPGLSGQKG-----------D 1206
Query: 232 QGLPSLPPNTSPFPGP--DPGF---PGPGGEDG-----GKPLNPPASTAFPQEPHSGSPA 281
GLP +P N PGP +PGF PG G G G L P PQ P G P
Sbjct: 1207 GGLPGIPGNPG-LPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGP-PGRPG 1264
Query: 282 AAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPGL 326
P PP G GG + + PG G G G Q PPGL
Sbjct: 1265 LP----GPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL 1307
Score = 74.3 bits (181), Expect = 2e-13
Identities = 102/341 (29%), Positives = 117/341 (34%), Gaps = 67/341 (19%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
GGGG P PP K G+ G+ P +K P + + PP P +
Sbjct: 1152 GGGGHPGQPGPPGEKGKPGQDGI----PGPAGQKGEPGQPGFGNP---GPPGLPGLSGQ- 1203
Query: 74 ASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQP 133
+ D G P G+ P L P GF G+ G PPG
Sbjct: 1204 -----KGDGGLP--GIPGNPGLPGPKGEPGFHGFPGVQG--PPG---------------- 1238
Query: 134 PPFPPNPM--GPAFNMPPQGPGYPP--PGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGG 189
PP P P GP N PQGP P PG P P N + P +PG G
Sbjct: 1239 PPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGL 1298
Query: 190 FGPMISPTM-GQPPRAEL----GPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPF 244
G P + G P R L G P L PG P P PG P P
Sbjct: 1299 KGDQGPPGLQGNPGRPGLNGMKGDPGLP---GVPGFPGMKGPSGVPGSAGPEGEPGLIGP 1355
Query: 245 PGPDPGFPGPGGE------DGGKPLNP--PASTAFP--QEPH-----SGSPAAAVNGNQP 289
PGP PG PGP G+ D G P P P P Q P +G P P
Sbjct: 1356 PGP-PGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP 1414
Query: 290 SFPPNSSGRGG-----GTPDANSLAPPGKAGGGSGPQPPPG 325
F + GR G G P L P G GP PPG
Sbjct: 1415 GFD-GAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPG 1454
Score = 71.6 bits (174), Expect = 1e-12
Identities = 116/431 (26%), Positives = 136/431 (31%), Gaps = 111/431 (25%)
Query: 7 PPPDKLEGGGGPAPPPAPPS----------TGRKQGKAGLQMKSPEKKRRK-SNTQGP-- 53
P D +G G PP PP T ++G GL EK R QGP
Sbjct: 324 PGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG 383
Query: 54 --AYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMA 111
PP P + D G P + + PP L G G A
Sbjct: 384 LPGPPGAAVMGPPGPP---GFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 112 GQV--------------PPGYSTGGGG--GPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP 155
G PPG S G G G Q ++ N +G + PP PG P
Sbjct: 441 GPHIPPSDEICEPGPPGPPG-SPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLP 499
Query: 156 ----PPGNMNFPSQPFNQ-------PLGQNFSP--PSGQMMPGPVGGFGPMISPTMGQPP 202
PPG++ FP Q + P G P P PG G G +++ +
Sbjct: 500 GLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD 559
Query: 203 RAELGPPS------LSQRFAQPGAPFGPSPLQRPG-------------QGLPSLPPNTSP 243
+ ELG P L Q G P P P PG GLP LP N P
Sbjct: 560 KGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGP 619
Query: 244 F-------PGP--------------DPGFPGPGGEDGGKPLNPPASTAFPQEP----HSG 278
PGP PG PGP G D G+ + P P P G
Sbjct: 620 MGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKG-DPGQTITQPGKPGLPGNPGRDGDVG 678
Query: 279 SPAAAVNGNQPSFP--PNSSGRGG-------GTPDANSL----APPGKAG-----GGSGP 320
P QP P P S G G G P PPG G G GP
Sbjct: 679 LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGP 738
Query: 321 QPPPGLVYPCG 331
PPG P G
Sbjct: 739 PGPPGFPGPKG 749
Score = 68.9 bits (167), Expect = 8e-12
Identities = 88/291 (30%), Positives = 102/291 (35%), Gaps = 64/291 (21%)
Query: 81 DFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPL-----RRQPPP 135
D G P G P + P GF G+ G PG+ G GPQ + +
Sbjct: 79 DDGIP--GPPGPKGIRGPPGLPGFPGTPGLPGM--PGHD--GAPGPQGIPGCNGTKGERG 132
Query: 136 FPPNPMGPAFNMPPQGPGYP----------------PPGNMNFPSQPFNQPLGQNFSPPS 179
FP +P P PP PG P P GN +P P Q L P
Sbjct: 133 FPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPG 192
Query: 180 GQMMPGPVGGFGPMISP-------TMG---QPPRAELGPPSLSQRFAQPGAPFGPSPLQR 229
PGP G GP P MG Q P+ E G L PG P S +R
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQ---GPPGPPGQISEQKR 249
Query: 230 P-----GQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEP-HSGSPAAA 283
P +G LP + P PGP PG GP G GG+ EP G P
Sbjct: 250 PIDVEFQKGDQGLPGDRGP-PGP-PGIRGPPGPPGGE----KGEKGEQGEPGKRGKPGKD 303
Query: 284 VNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG-----GGSGPQPPPGLVYP 329
QP P G D PG+ G G +GP PPGLV P
Sbjct: 304 GENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIP 347
Score = 53.1 bits (126), Expect = 4e-07
Identities = 62/180 (34%), Positives = 67/180 (37%), Gaps = 26/180 (14%)
Query: 158 GNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQP-PRAELGPPSLSQRFA 216
G FP + L F P G PGP G G P G P P+ GPP L
Sbjct: 48 GERGFPGLEGHPGL-PGFPGPEGP--PGPRGQKGDDGIP--GPPGPKGIRGPPGLPGFPG 102
Query: 217 QPGAPFGPSPLQRPG-QGLPSLPPNTSP--FPGPDPGFPGPGGEDGGKPLNPPASTAFPQ 273
PG P P PG QG+P FPG PGFPG G G PP
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPG-SPGFPGLQGPPG-----PPGIPGMKG 156
Query: 274 EPHS--GSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
EP S S GN P +P G P L P G GP PPGL+ P G
Sbjct: 157 EPGSIIMSSLPGPKGN-PGYP--------GPPGIQGLPGPTGIPGPIGPPGPPGLMGPPG 207
Score = 42.4 bits (98), Expect = 8e-04
Identities = 71/270 (26%), Positives = 93/270 (34%), Gaps = 57/270 (21%)
Query: 4 SAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQG--PAYSHLTEF 61
S P + +G GP PP P +G GL K + + Q P L
Sbjct: 1242 SPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGD 1301
Query: 62 APPPTPMVDHLVASNPFEDDFGAPKV-GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYST 120
PP + NP G P + G+ P L F G + G+ G S
Sbjct: 1302 QGPPG------LQGNP-----GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPG------SA 1344
Query: 121 GGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
G G P + PP P P G + + +G PP P QP + L P
Sbjct: 1345 GPEGEPGLIGPPGPPGLPGPSGQSIII--KGDAGPP----GIPGQPGLKGLP---GPQGP 1395
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPN 240
Q +PGP GPP R PG F + ++ GLP P
Sbjct: 1396 QGLPGPT-------------------GPPGDPGRNGLPG--FDGAGGRKGDPGLPG-QPG 1433
Query: 241 TSPFPGPDPGFPGPGGEDGGKPLNPPASTA 270
T GP PGP G G P PP +++
Sbjct: 1434 TRGLDGP----PGPDGLQG--PPGPPGTSS 1457
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 78.2 bits (191), Expect = 1e-14
Identities = 104/374 (27%), Positives = 131/374 (35%), Gaps = 79/374 (21%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P L G PP PP +G GL + P+ ++ + QGP P P
Sbjct: 196 PPGPPGLMG------PPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP---------PGP 240
Query: 66 TPMVDHLVASNPFEDDF-----GAP-KVGVAAPPFL-GSPVPFGGFRVQGGMAGQ----- 113
+ P + +F G P G PP + G P P GG + + G G+
Sbjct: 241 PGQISE--QKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 114 ------------VP-----PGYSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPP 156
+P PGY G G ++ PP P G P G
Sbjct: 299 KPGKDGENGQPGIPGLPGDPGY-PGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGE 357
Query: 157 PGNMNFPSQP----------FNQPLGQNFSPPSGQMM--PGPVGGFGPMISPTMGQPPRA 204
GN+ P P P G PP +M PGP G G PP
Sbjct: 358 KGNIGLPGLPGEKGERGFPGIQGPPGLP-GPPGAAVMGPPGPPGFPGERGQKGDEGPPGI 416
Query: 205 EL-GPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPL 263
+ GPP L QPGAP P P PG P +PP+ +PG PGP G G K L
Sbjct: 417 SIPGPPGLD---GQPGAPGLPGP---PGPAGPHIPPSDEIC---EPGPPGPPGSPGDKGL 467
Query: 264 NPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG-----GGS 318
+ G G S PP G G SL PG+ G G +
Sbjct: 468 QGEQGV----KGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGAT 523
Query: 319 GPQPPPGLVYPCGA 332
GP+ PG+ GA
Sbjct: 524 GPKGLPGIPGAPGA 537
Score = 76.3 bits (186), Expect = 5e-14
Identities = 102/341 (29%), Positives = 121/341 (35%), Gaps = 80/341 (23%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP P +G G A P P +G G + P K N L P
Sbjct: 627 PPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLP--GDPG 684
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPP----FLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
P L + + G P +G+ PP F G P P G G + + PPG
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPG---- 740
Query: 122 GGGGPQPLRRQPPPFPPNPMGPAFNMP--PQGPGYP-------PPGNMNFPSQPFNQPLG 172
PP FP P F +P P PG P P G+ FP P
Sbjct: 741 -----------PPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP------ 783
Query: 173 QNFSPPSG---QMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ--PGAPFGPSPL 227
PP +PGP G GP GQP +GPP L Q PG P P P+
Sbjct: 784 ---GPPGRTGLDGLPGPKGDVGPN-----GQP--GPMGPPGLPGIGVQGPPGPPGIPGPI 833
Query: 228 QRPG-QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNG 286
+PG G+P + P PG D PGP GE G S P G+P
Sbjct: 834 GQPGLHGIPGEKGDPGP-PGLD--VPGPPGERG--------SPGIP-----GAPG----- 872
Query: 287 NQPSFPPNSSGRGGGTPDANSLAPPGKAG--GGSGPQPPPG 325
P PP S G G A + PG G G GP PPG
Sbjct: 873 --PIGPPGSPGLPG---KAGASGFPGTKGEMGMMGPPGPPG 908
Score = 75.5 bits (184), Expect = 8e-14
Identities = 100/349 (28%), Positives = 121/349 (34%), Gaps = 47/349 (13%)
Query: 7 PPPDKLEGGGGPAPPPAPPST----GRKQGKAGLQMKS---PEKKRRKSNTQGPAYSHLT 59
P P +EG GP+ P P + G+K K + S P K P Y
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGY---- 1090
Query: 60 EFAPPPTPMVDHLVASNPFEDDFGAP--KVGVAAPPFLGSPVPFGGFRVQG-----GMAG 112
P P + V G P K P F G+P P G + G G+ G
Sbjct: 1091 ----PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPG 1146
Query: 113 QVPPGYSTGGG--GGPQPLRRQPPPFPPNPMGPAFNM-PPQGPGYPPPGNMNFPSQPFNQ 169
+ PG GGG G P P + P GPA P PG+ PG P +
Sbjct: 1147 E--PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQK 1204
Query: 170 PLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQR 229
G P +PGP G G P + PP GPP PG P P
Sbjct: 1205 GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPP----GPP------GSPG-PALEGPKGN 1253
Query: 230 PGQGLPSLPPNTSPFPGPD--PGFPGPGGEDGGKPLNPPASTAFPQEP----HSGSPAAA 283
PG P P PGP+ PG PG GG G K P P P G P
Sbjct: 1254 PGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEK--GNPGQPGLPGLPGLKGDQGPPGLQ 1311
Query: 284 VNGNQPSFPPNSSGRG-GGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
N +P G G P + P G +GP+ PGL+ P G
Sbjct: 1312 GNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPG 1360
Score = 75.1 bits (183), Expect = 1e-13
Identities = 104/364 (28%), Positives = 120/364 (32%), Gaps = 69/364 (18%)
Query: 16 GGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLVA- 74
G P P AP G K G+ G + P K K P L P TP D L
Sbjct: 530 GIPGAPGAPGFPGSK-GEPGDILTFPGMKGDKGELGSPGAPGLPGL--PGTPGQDGLPGL 586
Query: 75 --------SNPFEDDFGAP----------KVGVAAPPFLGSPVPFGGFRVQGGMAGQVPP 116
F+ + G P +G PP G P P G +QG P
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQP 646
Query: 117 GYSTGGGGGPQPLRRQP--PPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQN 174
G G G P QP P P NP P PG P G P P ++ G+
Sbjct: 647 GIP-GPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLP--GQPGLPGIPGSK--GEP 701
Query: 175 FSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGL 234
P G +PGP G P P + PP A G P PG P P P PG L
Sbjct: 702 GIPGIG--LPGPPG---PKGFPGIPGPPGAP-GTPGRIGLEGPPGPPGFPGPKGEPGFAL 755
Query: 235 PSLPPNTSPFPG--------PDPGFPGPGGEDGGK-------------------PLNPPA 267
P PP PG D GFPGP G G P+ PP
Sbjct: 756 PG-PPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG 814
Query: 268 STAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGG-GTPDANSLAPPGKAG-----GGSGPQ 321
+ G P QP +G G P + PPG+ G G GP
Sbjct: 815 LPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPI 874
Query: 322 PPPG 325
PPG
Sbjct: 875 GPPG 878
Score = 74.3 bits (181), Expect = 2e-13
Identities = 98/333 (29%), Positives = 121/333 (36%), Gaps = 40/333 (12%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
P PP G P PP AP + GR + ++ P +G L PP
Sbjct: 709 PGPPGPKGFPGIPGPPGAPGTPGR------IGLEGPPGPPGFPGPKGEPGFALP--GPPG 760
Query: 66 TPMVDHLVASNPFEDDFGAPKVGVAAPP----FLGSPVPFGGFRVQGGMAGQVPPGYSTG 121
P + + + D G P G PP G P P G G PPG
Sbjct: 761 PPGLPGFKGALGPKGDRGFP--GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGI 818
Query: 122 GGGGPQPLRRQPPPFPPNPMG-PAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSG 180
G GP PP P P+G P + P G P P ++ P P G+ SP
Sbjct: 819 GVQGPPG-----PPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP-----GERGSPG-- 866
Query: 181 QMMPGPVGGFGPMISPTMGQPPRAEL-GPPSLSQRFAQPGAPFGPSPLQRPGQ-GLPSLP 238
+PG G GP SP G P +A G P G P P PL PG+ G+P L
Sbjct: 867 --IPGAPGPIGPPGSP--GLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 239 PNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPH-SGSPAAAVNGNQPSFPPNSSG 297
+ G PG PGP GE G K P +P+ GS P P S
Sbjct: 923 GDDG-LQG-QPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGP 980
Query: 298 RG----GGTPDANSLAPPGKAGGGSGPQPPPGL 326
+G G P L+ G GP+ PGL
Sbjct: 981 KGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGL 1013
Score = 73.2 bits (178), Expect = 4e-13
Identities = 102/344 (29%), Positives = 117/344 (34%), Gaps = 70/344 (20%)
Query: 14 GGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLV 73
GGGG P PP K G+ G+ P +K P + + PP P +
Sbjct: 1152 GGGGHPGQPGPPGEKGKPGQDGI----PGPAGQKGEPGQPGFGNP---GPPGLPGLSGQ- 1203
Query: 74 ASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQP 133
+ D G P G+ P L P GF G+ G PPG
Sbjct: 1204 -----KGDGGLP--GIPGNPGLPGPKGEPGFHGFPGVQG--PPG---------------- 1238
Query: 134 PPFPPNPM--GPAFNMPPQGPGYPP-----PGNMNFPSQPFNQPLGQNFSPPSGQMMPGP 186
PP P P GP N PQGP P PG P P N + P +PG
Sbjct: 1239 PPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1298
Query: 187 VGGFGPMISPTM-GQPPRAEL----GPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNT 241
G G P + G P R L G P L PG P P PG P P
Sbjct: 1299 PGLKGDQGPPGLQGNPGRPGLNGMKGDPGLP---GVPGFPGMKGPSGVPGSAGPEGEPGL 1355
Query: 242 SPFPGPDPGFPGPGGE------DGGKPLNP--PASTAFP--QEPH-----SGSPAAAVNG 286
PGP PG PGP G+ D G P P P P Q P +G P
Sbjct: 1356 IGPPGP-PGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRN 1414
Query: 287 NQPSFPPNSSGRGG-----GTPDANSLAPPGKAGGGSGPQPPPG 325
P F + GR G G P L P G GP PPG
Sbjct: 1415 GLPGFD-GAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPG 1457
Score = 72.4 bits (176), Expect = 7e-13
Identities = 111/394 (28%), Positives = 125/394 (31%), Gaps = 83/394 (21%)
Query: 7 PPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPT 66
P L G G PP P G+ GL P + G E P P+
Sbjct: 990 PGQPGLSGQPGLPGPPGPKGNPGLPGQPGLI--GPPGLKGTIGDMGFPGPQGVEGPPGPS 1047
Query: 67 -----PMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQV-PPGYST 120
P L + D G +G+ P G+ G+ G V PG
Sbjct: 1048 GVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLP- 1106
Query: 121 GGGGGPQPLRRQP--PPFP--PNPMGP-AFNMPPQGPGYP----PPGNMNFPSQPFNQPL 171
G G + QP P FP P P GP + PP PG P P G P QP P
Sbjct: 1107 -GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP--GPP 1163
Query: 172 GQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQ---------PGAPF 222
G+ P +PGP G G P G P GPP L Q PG P
Sbjct: 1164 GEK-GKPGQDGIPGPAGQKGEPGQPGFGNP-----GPPGLPGLSGQKGDGGLPGIPGNPG 1217
Query: 223 GPSPLQRPG-QGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPH-SGSP 280
P P PG G P + P P P GP G G P PP F P G P
Sbjct: 1218 LPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPG--PQGPPGRPGFQGLPGPEGPP 1275
Query: 281 AAAVNGN---------QPSFP--PNSSGRGG--------GTPDANSL------------- 308
NG QP P P G G G P N +
Sbjct: 1276 GLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFP 1335
Query: 309 ------APPGKAG-----GGSGPQPPPGLVYPCG 331
PG AG G GP PPGL P G
Sbjct: 1336 GMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSG 1369
Score = 71.6 bits (174), Expect = 1e-12
Identities = 116/431 (26%), Positives = 136/431 (31%), Gaps = 111/431 (25%)
Query: 7 PPPDKLEGGGGPAPPPAPPS----------TGRKQGKAGLQMKSPEKKRRK-SNTQGP-- 53
P D +G G PP PP T ++G GL EK R QGP
Sbjct: 324 PGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG 383
Query: 54 --AYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMA 111
PP P + D G P + + PP L G G A
Sbjct: 384 LPGPPGAAVMGPPGPP---GFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 112 GQV--------------PPGYSTGGGG--GPQPLRRQPPPFPPNPMGPAFNMPPQGPGYP 155
G PPG S G G G Q ++ N +G + PP PG P
Sbjct: 441 GPHIPPSDEICEPGPPGPPG-SPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLP 499
Query: 156 ----PPGNMNFPSQPFNQ-------PLGQNFSP--PSGQMMPGPVGGFGPMISPTMGQPP 202
PPG++ FP Q + P G P P PG G G +++ +
Sbjct: 500 GLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD 559
Query: 203 RAELGPPS------LSQRFAQPGAPFGPSPLQRPG-------------QGLPSLPPNTSP 243
+ ELG P L Q G P P P PG GLP LP N P
Sbjct: 560 KGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGP 619
Query: 244 F-------PGP--------------DPGFPGPGGEDGGKPLNPPASTAFPQEP----HSG 278
PGP PG PGP G D G+ + P P P G
Sbjct: 620 MGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKG-DPGQTITQPGKPGLPGNPGRDGDVG 678
Query: 279 SPAAAVNGNQPSFP--PNSSGRGG-------GTPDANSL----APPGKAG-----GGSGP 320
P QP P P S G G G P PPG G G GP
Sbjct: 679 LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGP 738
Query: 321 QPPPGLVYPCG 331
PPG P G
Sbjct: 739 PGPPGFPGPKG 749
Score = 68.9 bits (167), Expect = 8e-12
Identities = 88/291 (30%), Positives = 102/291 (35%), Gaps = 64/291 (21%)
Query: 81 DFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPL-----RRQPPP 135
D G P G P + P GF G+ G PG+ G GPQ + +
Sbjct: 79 DDGIP--GPPGPKGIRGPPGLPGFPGTPGLPGM--PGHD--GAPGPQGIPGCNGTKGERG 132
Query: 136 FPPNPMGPAFNMPPQGPGYP----------------PPGNMNFPSQPFNQPLGQNFSPPS 179
FP +P P PP PG P P GN +P P Q L P
Sbjct: 133 FPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPG 192
Query: 180 GQMMPGPVGGFGPMISP-------TMG---QPPRAELGPPSLSQRFAQPGAPFGPSPLQR 229
PGP G GP P MG Q P+ E G L PG P S +R
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQ---GPPGPPGQISEQKR 249
Query: 230 P-----GQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEP-HSGSPAAA 283
P +G LP + P PGP PG GP G GG+ EP G P
Sbjct: 250 PIDVEFQKGDQGLPGDRGP-PGP-PGIRGPPGPPGGE----KGEKGEQGEPGKRGKPGKD 303
Query: 284 VNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG-----GGSGPQPPPGLVYP 329
QP P G D PG+ G G +GP PPGLV P
Sbjct: 304 GENGQPGIP-------GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIP 347
Score = 67.0 bits (162), Expect = 3e-11
Identities = 102/368 (27%), Positives = 127/368 (34%), Gaps = 77/368 (20%)
Query: 2 AASAPPPPDKLEGGGGPAPP------PAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGP-- 53
A PP P L G G P P PP + G GL P+ + GP
Sbjct: 754 ALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLP--GPKGDVGPNGQPGPMG 811
Query: 54 --AYSHLTEFAPPPTPMVDHLVASNPF------EDDFGAPKVGVAAPP-------FLGSP 98
+ PP P + + + D G P + V PP G+P
Sbjct: 812 PPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAP 871
Query: 99 VPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNPMG-PAFNMPP-------- 149
P G G G ++G G + PP PP P+G P + P
Sbjct: 872 GPIG----PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927
Query: 150 QG-PGYPPP-------GNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQP 201
QG PG P P G P P P+ N G+ + G + P Q
Sbjct: 928 QGQPGLPGPTGEKGSKGEPGLPGPP--GPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQG 985
Query: 202 PRAELGPPSLSQRFAQPGAPFGPSPLQRPG-QGLPSL--PPNTSPFPGPDPGFPGPGGED 258
+ G P LS QPG P P P PG G P L PP G D GFPGP G +
Sbjct: 986 LPGDPGQPGLS---GQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG-DMGFPGPQGVE 1041
Query: 259 GGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGS 318
G PP + P +P GSP P G G P +S+ PG
Sbjct: 1042 G-----PPGPSGVPGQP--GSPGL----------PGQKG-DKGDPGISSIGLPGL----P 1079
Query: 319 GPQPPPGL 326
GP+ PGL
Sbjct: 1080 GPKGEPGL 1087
Score = 53.1 bits (126), Expect = 4e-07
Identities = 62/180 (34%), Positives = 67/180 (37%), Gaps = 26/180 (14%)
Query: 158 GNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQP-PRAELGPPSLSQRFA 216
G FP + L F P G PGP G G P G P P+ GPP L
Sbjct: 48 GERGFPGLEGHPGL-PGFPGPEGP--PGPRGQKGDDGIP--GPPGPKGIRGPPGLPGFPG 102
Query: 217 QPGAPFGPSPLQRPG-QGLPSLPPNTSP--FPGPDPGFPGPGGEDGGKPLNPPASTAFPQ 273
PG P P PG QG+P FPG PGFPG G G PP
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPG-SPGFPGLQGPPG-----PPGIPGMKG 156
Query: 274 EPHS--GSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCG 331
EP S S GN P +P G P L P G GP PPGL+ P G
Sbjct: 157 EPGSIIMSSLPGPKGN-PGYP--------GPPGIQGLPGPTGIPGPIGPPGPPGLMGPPG 207
Score = 40.8 bits (94), Expect = 0.002
Identities = 69/266 (25%), Positives = 89/266 (33%), Gaps = 65/266 (24%)
Query: 6 PPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPP 65
PP +G GP PP P G +G+ G P L PP
Sbjct: 1259 PPGRPGFQGLPGPEGPPGLPGNGGIKGEKG----------NPGQPGLPGLPGLKGDQGPP 1308
Query: 66 TPMVDHLVASNPFEDDFGAPKV-GVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGG 124
+ NP G P + G+ P L F G + G+ G S G G
Sbjct: 1309 G------LQGNP-----GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPG------SAGPEG 1351
Query: 125 GPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMP 184
P + PP P P G + + +G PP P QP + L P Q +P
Sbjct: 1352 EPGLIGPPGPPGLPGPSGQSIII--KGDAGPP----GIPGQPGLKGLP---GPQGPQGLP 1402
Query: 185 GPVGGFGPMISPTMGQPPRAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPF 244
GP GPP R PG F + ++ GLP P T
Sbjct: 1403 GPT-------------------GPPGDPGRNGLPG--FDGAGGRKGDPGLPG-QPGTRGL 1440
Query: 245 PGPDPGFPGPGGEDGGKPLNPPASTA 270
GP PGP G G P PP +++
Sbjct: 1441 DGP----PGPDGLQG--PPGPPGTSS 1460
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,512,071
Number of Sequences: 37866
Number of extensions: 2589094
Number of successful extensions: 32336
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 1802
Number of HSP's that attempted gapping in prelim test: 11878
Number of HSP's gapped (non-prelim): 11054
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.