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Search of human proteins with 23312364
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23312364 ubiquitin-like with PHD and ring finger domains 2
[Homo sapiens]
(802 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 1675 0.0
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 872 0.0
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 872 0.0
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 61 4e-09
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 61 4e-09
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 59 1e-08
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 59 1e-08
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 59 2e-08
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 59 2e-08
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 57 7e-08
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 56 2e-07
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 55 2e-07
gi|205830434 D4, zinc and double PHD fingers family 1 isoform c ... 54 6e-07
gi|205830430 D4, zinc and double PHD fingers family 1 isoform a ... 54 6e-07
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 54 8e-07
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 54 8e-07
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens] 54 8e-07
gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive ... 54 8e-07
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 54 8e-07
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 54 8e-07
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 54 8e-07
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo... 53 1e-06
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo... 53 1e-06
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 52 2e-06
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 52 3e-06
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 52 3e-06
gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [H... 51 4e-06
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 51 4e-06
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 51 4e-06
gi|38788260 bromodomain PHD finger transcription factor isoform ... 50 6e-06
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [Homo
sapiens]
Length = 802
Score = 1675 bits (4339), Expect = 0.0
Identities = 802/802 (100%), Positives = 802/802 (100%)
Query: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
Query: 61 YDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPPKVKKAPRVGPSNQPSTSARARLI 120
YDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPPKVKKAPRVGPSNQPSTSARARLI
Sbjct: 61 YDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPPKVKKAPRVGPSNQPSTSARARLI 120
Query: 121 DPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKTPLKNGSSCKRTNGNIKH 180
DPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKTPLKNGSSCKRTNGNIKH
Sbjct: 121 DPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKTPLKNGSSCKRTNGNIKH 180
Query: 181 KSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDEYPESGTLEMNVKDLRPRARTILKWN 240
KSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDEYPESGTLEMNVKDLRPRARTILKWN
Sbjct: 181 KSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDEYPESGTLEMNVKDLRPRARTILKWN 240
Query: 241 ELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKELRVKIFLGGSEGTLNDCKII 300
ELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKELRVKIFLGGSEGTLNDCKII
Sbjct: 241 ELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKELRVKIFLGGSEGTLNDCKII 300
Query: 301 SVDEIFKIERPGAHPLSFADGKFLRRNDPECDLCGGDPEKKCHSCSCRVCGGKHEPNMQL 360
SVDEIFKIERPGAHPLSFADGKFLRRNDPECDLCGGDPEKKCHSCSCRVCGGKHEPNMQL
Sbjct: 301 SVDEIFKIERPGAHPLSFADGKFLRRNDPECDLCGGDPEKKCHSCSCRVCGGKHEPNMQL 360
Query: 361 LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEVVKAGERLKMSKKKAKMPSAST 420
LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEVVKAGERLKMSKKKAKMPSAST
Sbjct: 361 LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEVVKAGERLKMSKKKAKMPSAST 420
Query: 421 ESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHG 480
ESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHG
Sbjct: 421 ESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHG 480
Query: 481 RSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALN 540
RSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALN
Sbjct: 481 RSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALN 540
Query: 541 CDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSS 600
CDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSS
Sbjct: 541 CDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSS 600
Query: 601 HGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYPSDKEGKKPKGQSKKQPSG 660
HGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYPSDKEGKKPKGQSKKQPSG
Sbjct: 601 HGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYPSDKEGKKPKGQSKKQPSG 660
Query: 661 TTKRPISDDDCPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEG 720
TTKRPISDDDCPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEG
Sbjct: 661 TTKRPISDDDCPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEG 720
Query: 721 PNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI 780
PNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI
Sbjct: 721 PNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI 780
Query: 781 MIPNEILQTLLDLFFPGYSKGR 802
MIPNEILQTLLDLFFPGYSKGR
Sbjct: 781 MIPNEILQTLLDLFFPGYSKGR 802
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 872 bits (2252), Expect = 0.0
Identities = 445/832 (53%), Positives = 569/832 (68%), Gaps = 69/832 (8%)
Query: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
MWIQVRT+DG +T T++ +SR +EELR ++ LF V P QRLFYRGKQ+E+G+TLFD
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60
Query: 61 YDVGLNDIIQLLVRPDPDHLPGTSTQIEAK------PCSNSPPKVKKAPRVGPSNQPSTS 114
Y+V LND IQLLVR LP ++ + +++ C + K+ G + + S
Sbjct: 61 YEVRLNDTIQLLVRQSLV-LPHSTKERDSELSDTDSGCCLGQSESDKSSTHGEAAAETDS 119
Query: 115 ARA---RLIDPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKTPLKNGSSC 171
A + G+YKVNE VDARD +GAWFEA + VTR K P ++
Sbjct: 120 RPADEDMWDETELGLYKVNEYVDARDTNMGAWFEAQVVRVTR--------KAPSRD---- 167
Query: 172 KRTNGNIKHKSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDEYPESGTLEMNVKDLRP 231
+ STS A +EDVIYH++YD+YPE+G ++MN +D+R
Sbjct: 168 ------------------EPCSSTSRP---ALEEDVIYHVKYDDYPENGVVQMNSRDVRA 206
Query: 232 RARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKELRVKIFLGGSE 291
RARTI+KW +L VG VVM+NYN ++P +RGFW+DAEI+ K +RT +EL + LG +
Sbjct: 207 RARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISR-KRETRTARELYANVVLG--D 263
Query: 292 GTLNDCKIISVDEIFKIERPGAHPLSFADGKFLRRNDPECDLCGGDPEKKCHSCSCRVCG 351
+LNDC+II VDE+FKIERPG D R++ P C C D + C C+C +CG
Sbjct: 264 DSLNDCRIIFVDEVFKIERPGEGS-PMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCG 322
Query: 352 GKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEVVKAGERLKMSKK 411
G+ +P+ QL+CDEC++A+HIYCL+PPL VP E+ WYCP C+ D+SEVV AGERL+ SKK
Sbjct: 323 GRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDASEVVLAGERLRESKK 382
Query: 412 KAKMPSASTESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVH 471
KAKM SA++ S+RDWG+GMACVGRT+ECTIVPSNHYGPIPGIPVG+ WRFRVQVSE+GVH
Sbjct: 383 KAKMASATSSSQRDWGKGMACVGRTKECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVH 442
Query: 472 RPHVGGIHGRSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLT 531
RPHV GIHGRSNDGAYSLVLAGG+ D+VD G+ FTYTGSGG++L+GNKR S DQ LT
Sbjct: 443 RPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLT 502
Query: 532 NMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVV 591
N NRALALNC AP++D+ GAE+++WR+GKPVRV+R+ KG K SKYAP EGNRYDGIYKVV
Sbjct: 503 NTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVV 562
Query: 592 KYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGY-----PSDKE 646
KYWPE S GFLVWRYLLRRDD EP PWT EG +R ++L L +QYP GY ++E
Sbjct: 563 KYWPEKGKS-GFLVWRYLLRRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALANRERE 621
Query: 647 GKKPKGQSKKQPSGTTKRP---------ISDDDCPSASKVYKASDSAEAIEAFQLTPQQQ 697
+ K + ++Q G P S PS + + + +E + LT QQ
Sbjct: 622 KENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAGSPRRTSKKTKVEPYSLTAQQS 681
Query: 698 HLIREDCQNQKLWDEVLSHLVEGPN-------FLKKLEQSFMCVCCQELVYQPVTTECFH 750
LIRED N KLW+EVL+ L + P FL K+E++F C+CCQELV++P+TT C H
Sbjct: 682 SLIREDKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQH 741
Query: 751 NVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR 802
NVCKDCL RSF+AQVFSCPACR+DLG++Y M N+ LQT+L+ FPGY GR
Sbjct: 742 NVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYGNGR 793
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 872 bits (2252), Expect = 0.0
Identities = 445/832 (53%), Positives = 569/832 (68%), Gaps = 69/832 (8%)
Query: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
MWIQVRT+DG +T T++ +SR +EELR ++ LF V P QRLFYRGKQ+E+G+TLFD
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73
Query: 61 YDVGLNDIIQLLVRPDPDHLPGTSTQIEAK------PCSNSPPKVKKAPRVGPSNQPSTS 114
Y+V LND IQLLVR LP ++ + +++ C + K+ G + + S
Sbjct: 74 YEVRLNDTIQLLVRQSLV-LPHSTKERDSELSDTDSGCCLGQSESDKSSTHGEAAAETDS 132
Query: 115 ARA---RLIDPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKTPLKNGSSC 171
A + G+YKVNE VDARD +GAWFEA + VTR K P ++
Sbjct: 133 RPADEDMWDETELGLYKVNEYVDARDTNMGAWFEAQVVRVTR--------KAPSRD---- 180
Query: 172 KRTNGNIKHKSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDEYPESGTLEMNVKDLRP 231
+ STS A +EDVIYH++YD+YPE+G ++MN +D+R
Sbjct: 181 ------------------EPCSSTSRP---ALEEDVIYHVKYDDYPENGVVQMNSRDVRA 219
Query: 232 RARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKELRVKIFLGGSE 291
RARTI+KW +L VG VVM+NYN ++P +RGFW+DAEI+ K +RT +EL + LG +
Sbjct: 220 RARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISR-KRETRTARELYANVVLG--D 276
Query: 292 GTLNDCKIISVDEIFKIERPGAHPLSFADGKFLRRNDPECDLCGGDPEKKCHSCSCRVCG 351
+LNDC+II VDE+FKIERPG D R++ P C C D + C C+C +CG
Sbjct: 277 DSLNDCRIIFVDEVFKIERPGEGS-PMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCG 335
Query: 352 GKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEVVKAGERLKMSKK 411
G+ +P+ QL+CDEC++A+HIYCL+PPL VP E+ WYCP C+ D+SEVV AGERL+ SKK
Sbjct: 336 GRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDASEVVLAGERLRESKK 395
Query: 412 KAKMPSASTESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVH 471
KAKM SA++ S+RDWG+GMACVGRT+ECTIVPSNHYGPIPGIPVG+ WRFRVQVSE+GVH
Sbjct: 396 KAKMASATSSSQRDWGKGMACVGRTKECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVH 455
Query: 472 RPHVGGIHGRSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLT 531
RPHV GIHGRSNDGAYSLVLAGG+ D+VD G+ FTYTGSGG++L+GNKR S DQ LT
Sbjct: 456 RPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLT 515
Query: 532 NMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVV 591
N NRALALNC AP++D+ GAE+++WR+GKPVRV+R+ KG K SKYAP EGNRYDGIYKVV
Sbjct: 516 NTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVV 575
Query: 592 KYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGY-----PSDKE 646
KYWPE S GFLVWRYLLRRDD EP PWT EG +R ++L L +QYP GY ++E
Sbjct: 576 KYWPEKGKS-GFLVWRYLLRRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALANRERE 634
Query: 647 GKKPKGQSKKQPSGTTKRP---------ISDDDCPSASKVYKASDSAEAIEAFQLTPQQQ 697
+ K + ++Q G P S PS + + + +E + LT QQ
Sbjct: 635 KENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAGSPRRTSKKTKVEPYSLTAQQS 694
Query: 698 HLIREDCQNQKLWDEVLSHLVEGPN-------FLKKLEQSFMCVCCQELVYQPVTTECFH 750
LIRED N KLW+EVL+ L + P FL K+E++F C+CCQELV++P+TT C H
Sbjct: 695 SLIREDKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQH 754
Query: 751 NVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR 802
NVCKDCL RSF+AQVFSCPACR+DLG++Y M N+ LQT+L+ FPGY GR
Sbjct: 755 NVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYGNGR 806
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 61.2 bits (147), Expect = 4e-09
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 339 EKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 393
+ + C+VC K E + +LCDECN A+H++CL P L +VP+ E W CP+C+
Sbjct: 1179 DMSAENARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGE-WQCPACQ 1232
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 61.2 bits (147), Expect = 4e-09
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 321 GKFLRRNDPECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDK 380
GK LR+ E + E C VCG + LLCD C+ YH+ CL+PPL +
Sbjct: 163 GKILRKIPVENTKASEEEEDPTF---CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQE 219
Query: 381 VPEEEYWYCPSCKTDSSEVVKAGERLKMSKKKAKMPSA----STESRRDWGRGMACVGRT 436
VP +E W+CP C VV A + +S+++ + A +T R + RT
Sbjct: 220 VPVDE-WFCPECAAPG--VVLAADAGPVSEEEVSLLLADVVPTTSRLRPRAGRTRAIART 276
Query: 437 RE 438
R+
Sbjct: 277 RQ 278
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 346 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVP---EEEYWYCPSCKTDSSEVVKA 402
SC +C H+ ++ LLCD C + YH+ CL+PPL ++P + YW C C S ++A
Sbjct: 727 SCGICKKNHDQHLLLLCDTCKLHYHLGCLDPPLTRMPRKTKNSYWQCSECDQAGSSDMEA 786
Query: 403 GERLKMSKKKAKMPSASTESRR 424
++ +P + SRR
Sbjct: 787 DMAME------TLPDGTKRSRR 802
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 346 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVP---EEEYWYCPSCKTDSSEVVKA 402
SC +C H+ ++ LLCD C + YH+ CL+PPL ++P + YW C C S ++A
Sbjct: 727 SCGICKKNHDQHLLLLCDTCKLHYHLGCLDPPLTRMPRKTKNSYWQCSECDQAGSSDMEA 786
Query: 403 GERLKMSKKKAKMPSASTESRR 424
++ +P + SRR
Sbjct: 787 DMAME------TLPDGTKRSRR 802
Score = 50.4 bits (119), Expect = 6e-06
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEE--YWYCPSCKTDSS-EVVKAG 403
C C G + + CDEC + YH CL+PPL K P++ W C C + SS E
Sbjct: 871 CATCKGTGDNENLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQECDSSSSKEDENEA 930
Query: 404 ERLKMSKK 411
ER +S++
Sbjct: 931 ERKNISQE 938
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 58.9 bits (141), Expect = 2e-08
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 341 KCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
+C C+ C CG +P LLCD+C+++YH YCL+PPL VP+ W C C
Sbjct: 1003 RCLECTVCEACGKATDPGRLLLCDDCDISYHTYCLDPPLQTVPKGG-WKCKWC 1054
Score = 45.8 bits (107), Expect = 2e-04
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 341 KCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 393
+C C C+ C E + L+CD C+ YH +CL P + VP W C +C+
Sbjct: 384 QCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNG-WKCKNCR 436
Score = 38.1 bits (87), Expect = 0.033
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 338 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSS 397
PE+ +C VC + Q C C YH CL+ + + + W CP CK
Sbjct: 335 PERSKEDANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPL-KRAGWQCPECKV-CQ 392
Query: 398 EVVKAGERLKM 408
++GE KM
Sbjct: 393 NCKQSGEDSKM 403
Score = 37.7 bits (86), Expect = 0.043
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 347 CRVCG--GKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C VCG G+ L C +C YH YC++ + KV + W C C
Sbjct: 960 CVVCGSFGQGAEGRLLACSQCGQCYHPYCVSIKITKVVLSKGWRCLEC 1007
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 341 KCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
+C C C VCG +P+ LLCD+C+++YH YCL+PPL VP+ W C C
Sbjct: 1423 RCVECIVCEVCGQASDPSRLLLCDDCDISYHTYCLDPPLLTVPKGG-WKCKWC 1474
Score = 47.8 bits (112), Expect = 4e-05
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 341 KCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 393
+C C C+ C + L+C+ C+ YH +CL PP++++P W C +C+
Sbjct: 269 QCPECKVCQACRKPGNDSKMLVCETCDKGYHTFCLKPPMEELPAHS-WKCKACR 321
Score = 40.0 bits (92), Expect = 0.009
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 347 CRVCG--GKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C VCG G+ L C +C+ YH YC+N + KV + W C C
Sbjct: 1380 CVVCGSFGRGAEGHLLACSQCSQCYHPYCVNSKITKVMLLKGWRCVEC 1427
Score = 35.4 bits (80), Expect = 0.21
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 315 PLSFADGKFLRRNDPECDLCGGDPEKKCH--SCSCRVCGGKHEPNMQLLCDECNVAYHIY 372
P + A G FL + LC E + C VC G E C C YH
Sbjct: 196 PCATASGSFLSMKTLQL-LCPEHSEGAAYLEEARCAVCEGPGELCDLFFCTSCGHHYHGA 254
Query: 373 CLNPPLDKVPEEEYWYCPSCK 393
CL+ L + W CP CK
Sbjct: 255 CLDTAL-TARKRAGWQCPECK 274
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 57.0 bits (136), Expect = 7e-08
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 393
C+ CG + P + LLCD C+ YH CL PPL +P+ E W+CP C+
Sbjct: 894 CKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGE-WFCPPCQ 939
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 327 NDPECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEY 386
+D E + G + E+ H CRVC E L CD C +YH++CLNPPL ++P E
Sbjct: 399 DDDEEEEGGCEEEEDDHMEFCRVCKDGGE---LLCCDACPSSYHLHCLNPPLPEIPNGE- 454
Query: 387 WYCPSC 392
W CP C
Sbjct: 455 WLCPRC 460
Score = 53.1 bits (126), Expect = 1e-06
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 317 SFADGKFLRRNDPECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNP 376
S A GK +R + + GD + H C VC + +LCD C AYH+ CL+P
Sbjct: 316 SAALGKKSKRRRKKKRIDDGDGYETDHQDYCEVC---QQGGEIILCDTCPRAYHLVCLDP 372
Query: 377 PLDKVPEEEYWYCPSCKTD 395
L+K PE + W CP C+ +
Sbjct: 373 ELEKAPEGK-WSCPHCEKE 390
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 55.5 bits (132), Expect = 2e-07
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 335 GGDPEKKC--HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
GGD E++ H CRVC E L CD C +YHI+CLNPPL ++P E W CP C
Sbjct: 438 GGDLEEEDDHHMEFCRVCKDGGE---LLCCDTCPSSYHIHCLNPPLPEIPNGE-WLCPRC 493
Score = 47.8 bits (112), Expect = 4e-05
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 343 HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 395
H C VC + +LCD C AYH+ CL+P ++K PE + W CP C+ +
Sbjct: 369 HQDYCEVC---QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGK-WSCPHCEKE 417
>gi|205830434 D4, zinc and double PHD fingers family 1 isoform c
[Homo sapiens]
Length = 332
Score = 53.9 bits (128), Expect = 6e-07
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 341 KCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEV 399
+C C SC +CG + L CD+C+ YH+YCL+PP+ + PE W C C E
Sbjct: 266 QCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLSPPMAEPPEGS-WSCHLCLRHLKEK 324
Query: 400 VKA 402
A
Sbjct: 325 ASA 327
>gi|205830430 D4, zinc and double PHD fingers family 1 isoform a
[Homo sapiens]
Length = 414
Score = 53.9 bits (128), Expect = 6e-07
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 341 KCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEV 399
+C C SC +CG + L CD+C+ YH+YCL+PP+ + PE W C C E
Sbjct: 348 QCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLSPPMAEPPEGS-WSCHLCLRHLKEK 406
Query: 400 VKA 402
A
Sbjct: 407 ASA 409
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 53.5 bits (127), Expect = 8e-07
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
CR+C E + LLCD C+ YHI+CL PPL ++P + W CP C
Sbjct: 260 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIP-KGVWRCPKC 304
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 53.5 bits (127), Expect = 8e-07
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
CR+C E + LLCD C+ YHI+CL PPL ++P + W CP C
Sbjct: 327 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIP-KGVWRCPKC 371
>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
Length = 1544
Score = 53.5 bits (127), Expect = 8e-07
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C +CG ++ + LLCD C+ +YH +CL PPL VP+ + W CP C
Sbjct: 312 CLLCGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGD-WRCPKC 356
>gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive
domain 1B (RBP2-like), partial [Homo sapiens]
Length = 977
Score = 53.5 bits (127), Expect = 8e-07
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C +CG ++ + LLCD C+ +YH +CL PPL VP+ + W CP C
Sbjct: 312 CLLCGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGD-WRCPKC 356
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 53.5 bits (127), Expect = 8e-07
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 335 GGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
G E+ H CRVC E L CD C +YHI+CLNPPL +P E W CP C
Sbjct: 447 GEKEEEDDHMEYCRVCKDGGE---LLCCDACISSYHIHCLNPPLPDIPNGE-WLCPRC 500
Score = 49.3 bits (116), Expect = 1e-05
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 343 HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 395
H C VC + +LCD C AYH+ CL+P LD+ PE + W CP C+ +
Sbjct: 378 HQDYCEVC---QQGGEIILCDTCPRAYHLVCLDPELDRAPEGK-WSCPHCEKE 426
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 53.5 bits (127), Expect = 8e-07
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 335 GGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
G E+ H CRVC E L CD C +YHI+CLNPPL +P E W CP C
Sbjct: 447 GEKEEEDDHMEYCRVCKDGGE---LLCCDACISSYHIHCLNPPLPDIPNGE-WLCPRC 500
Score = 49.3 bits (116), Expect = 1e-05
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 343 HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 395
H C VC + +LCD C AYH+ CL+P LD+ PE + W CP C+ +
Sbjct: 378 HQDYCEVC---QQGGEIILCDTCPRAYHLVCLDPELDRAPEGK-WSCPHCEKE 426
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 53.5 bits (127), Expect = 8e-07
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 335 GGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
G E+ H CRVC E L CD C +YHI+CLNPPL +P E W CP C
Sbjct: 506 GEKEEEDDHMEYCRVCKDGGE---LLCCDACISSYHIHCLNPPLPDIPNGE-WLCPRC 559
Score = 49.3 bits (116), Expect = 1e-05
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 343 HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 395
H C VC + +LCD C AYH+ CL+P LD+ PE + W CP C+ +
Sbjct: 437 HQDYCEVC---QQGGEIILCDTCPRAYHLVCLDPELDRAPEGK-WSCPHCEKE 485
>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform b
[Homo sapiens]
Length = 1524
Score = 53.1 bits (126), Expect = 1e-06
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 340 KKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 393
K + C++C K + +LCD C+ +H YC+ P L VPE + W+CP C+
Sbjct: 1112 KSILNARCKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKTVPEGD-WFCPECR 1164
>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform a
[Homo sapiens]
Length = 1556
Score = 53.1 bits (126), Expect = 1e-06
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 340 KKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 393
K + C++C K + +LCD C+ +H YC+ P L VPE + W+CP C+
Sbjct: 1144 KSILNARCKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKTVPEGD-WFCPECR 1196
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 52.0 bits (123), Expect = 2e-06
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 339 EKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSE 398
EK C++C + LLCD C+ H YC P + +P+ + W+CP+C +S
Sbjct: 1926 EKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGD-WFCPACIAKAS- 1983
Query: 399 VVKAGERLKMSKKKAKMPSASTESRRDWGRGMACVGRTRE 438
G+ LK+ K K + ES++ G+ + G T +
Sbjct: 1984 ----GQTLKIKKLHVK-GKKTNESKK--GKKVTLTGDTED 2016
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 51.6 bits (122), Expect = 3e-06
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C CG + + LLCD C+ +YH +CL PPL VP+ + W CP C
Sbjct: 296 CMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGD-WRCPKC 340
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 51.6 bits (122), Expect = 3e-06
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C CG + + LLCD C+ +YH +CL PPL VP+ + W CP C
Sbjct: 296 CMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGD-WRCPKC 340
>gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [Homo
sapiens]
Length = 1482
Score = 51.2 bits (121), Expect = 4e-06
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C+VC E + L CD C+ YHI+CL PPL ++P W CP C
Sbjct: 260 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIP-RGIWRCPKC 304
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 51.2 bits (121), Expect = 4e-06
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C+VC E + L CD C+ YHI+CL PPL ++P W CP C
Sbjct: 317 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIP-RGIWRCPKC 361
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 51.2 bits (121), Expect = 4e-06
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
C+VC E + L CD C+ YHI+CL PPL ++P W CP C
Sbjct: 317 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIP-RGIWRCPKC 361
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 50.4 bits (119), Expect = 6e-06
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 347 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 392
CRVC H+ L C+ C+ YH+ C+ PPL++VPE+E W C C
Sbjct: 393 CRVC---HKLGDLLCCETCSAVYHLECVKPPLEEVPEDE-WQCEVC 434
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,575,582
Number of Sequences: 37866
Number of extensions: 1762314
Number of successful extensions: 5646
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 5223
Number of HSP's gapped (non-prelim): 488
length of query: 802
length of database: 18,247,518
effective HSP length: 110
effective length of query: 692
effective length of database: 14,082,258
effective search space: 9744922536
effective search space used: 9744922536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.