Guide to the Human Genome
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Name: UHRF1 Sequence: fasta or formatted (806aa) NCBI GI: 115430233
Description:

ubiquitin-like with PHD and ring finger domains 1 isoform 2

Referenced in:

DNA Methylation
PHD Finger Proteins
Ring Finger Proteins
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [793aa] ubiquitin-like with PHD and ring finger domains 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         47           3
 C cysteine            3.3         27           2
 D aspartate           7.1         57           3
 E glutamate           7.6         61           4
 F phenylalanine       2.7         22           2
 G glycine             7.7         62           3
 H histidine           1.9         15           1
 I isoleucine          2.6         21           2
 K lysine              6.3         51           3
 L leucine             6.9         56           2
 M methionine          2.1         17           1
 N asparagine          4.0         32           1
 P proline             5.2         42           2
 Q glutamine           4.1         33           2
 R arginine            8.4         68           2
 S serine              7.4         60           3
 T threonine           4.6         37           2
 V valine              7.1         57           2
 W tryptophan          1.7         14           1
 Y tyrosine            3.3         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-like with PHD and ring finger domains 1 i... 
UHRF1                 0.984   ubiquitin-like with PHD and ring finger domains 1 i...
UHRF2                 0.513   ubiquitin-like with PHD and ring finger domains 2 [H...
PHRF1                 0.027   PHD and ring finger domains 1 
MLL2                  0.022   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL3                  0.022   myeloid/lymphoid or mixed-lineage leukemia 3 
KDM5B                 0.021   jumonji, AT rich interactive domain 1B 
LOC100133760          0.021   PREDICTED: similar to Jumonji, AT rich interactive ...
KDM5A                 0.021   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.021   retinoblastoma binding protein 2 isoform 2 
BAZ1B                 0.020   bromodomain adjacent to zinc finger domain, 1B [Homo...
MYST4                 0.020   MYST histone acetyltransferase (monocytic leukemia)...
DPF1                  0.020   D4, zinc and double PHD fingers family 1 isoform c ...
DPF1                  0.020   D4, zinc and double PHD fingers family 1 isoform a ...
BAZ1A                 0.020   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.020   bromodomain adjacent to zinc finger domain, 1A isofo...
CHD5                  0.019   chromodomain helicase DNA binding protein 5 
RSF1                  0.018   remodeling and spacing factor 1 
KDM5C                 0.018   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.018   jumonji, AT rich interactive domain 1C isoform 1 [H...
DPF2                  0.018   D4, zinc and double PHD fingers family 2 
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform...
BAZ2B                 0.018   bromodomain adjacent to zinc finger domain, 2B [Homo...
KDM5D                 0.017   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.017   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.017   jumonji, AT rich interactive domain 1D isoform 1 [H...
PHF14                 0.016   PHD finger protein 14 isoform 2 
PHF14                 0.016   PHD finger protein 14 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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