Guide to the Human Genome
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Name: UHRF2 Sequence: fasta or formatted (802aa) NCBI GI: 23312364
Description:

ubiquitin-like with PHD and ring finger domains 2

Referenced in:

PHD Finger Proteins
Ring Finger Proteins
Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         43           2
 C cysteine            3.9         31           2
 D aspartate           6.4         51           3
 E glutamate           6.5         52           3
 F phenylalanine       3.0         24           2
 G glycine             7.7         62           2
 H histidine           2.2         18           1
 I isoleucine          4.9         39           2
 K lysine              7.4         59           3
 L leucine             7.1         57           2
 M methionine          1.2         10           1
 N asparagine          4.4         35           1
 P proline             6.2         50           2
 Q glutamine           3.5         28           3
 R arginine            7.0         56           2
 S serine              7.6         61           3
 T threonine           4.5         36           2
 V valine              6.4         51           2
 W tryptophan          1.6         13           1
 Y tyrosine            3.2         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-like with PHD and ring finger domains 2 [H... 
UHRF1                 0.513   ubiquitin-like with PHD and ring finger domains 1 i...
UHRF1                 0.513   ubiquitin-like with PHD and ring finger domains 1 i...
BAZ1B                 0.022   bromodomain adjacent to zinc finger domain, 1B [Homo...
PHRF1                 0.022   PHD and ring finger domains 1 
PHF14                 0.021   PHD finger protein 14 isoform 2 
PHF14                 0.021   PHD finger protein 14 isoform 1 
MLL3                  0.021   myeloid/lymphoid or mixed-lineage leukemia 3 
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
RSF1                  0.019   remodeling and spacing factor 1 
CHD5                  0.019   chromodomain helicase DNA binding protein 5 
CHD4                  0.018   chromodomain helicase DNA binding protein 4 
DPF1                  0.018   D4, zinc and double PHD fingers family 1 isoform c ...
DPF1                  0.018   D4, zinc and double PHD fingers family 1 isoform a ...
KDM5C                 0.018   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.018   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5B                 0.018   jumonji, AT rich interactive domain 1B 
LOC100133760          0.018   PREDICTED: similar to Jumonji, AT rich interactive ...
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform...
BAZ1A                 0.017   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.017   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ2B                 0.016   bromodomain adjacent to zinc finger domain, 2B [Homo...
KDM5A                 0.016   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.016   retinoblastoma binding protein 2 isoform 2 
KDM5D                 0.016   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.016   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.016   jumonji, AT rich interactive domain 1D isoform 1 [H...
BPTF                  0.015   bromodomain PHD finger transcription factor isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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