Guide to the Human Genome
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Name: DPF1 Sequence: fasta or formatted (332aa) NCBI GI: 205830434
Description:

D4, zinc and double PHD fingers family 1 isoform c

Referenced in:

Neurons
PHD Finger Proteins

Other entries for this name:
alt prot [414aa] D4, zinc and double PHD fingers family 1 isoform a
alt prot [380aa] D4, zinc and double PHD fingers family 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         21           2
 C cysteine            6.6         22           1
 D aspartate           6.0         20           2
 E glutamate           9.6         32           3
 F phenylalanine       1.8          6           1
 G glycine             7.2         24           2
 H histidine           3.9         13           1
 I isoleucine          3.6         12           1
 K lysine              8.4         28           2
 L leucine             9.3         31           2
 M methionine          1.5          5           1
 N asparagine          2.7          9           2
 P proline             6.6         22           2
 Q glutamine           3.0         10           2
 R arginine            6.9         23           2
 S serine              3.9         13           1
 T threonine           4.8         16           1
 V valine              2.1          7           1
 W tryptophan          1.2          4           1
 Y tyrosine            4.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   D4, zinc and double PHD fingers family 1 isoform c ... 
DPF1                  1.000   D4, zinc and double PHD fingers family 1 isoform a ...
DPF1                  0.816   D4, zinc and double PHD fingers family 1 isoform b ...
DPF2                  0.534   D4, zinc and double PHD fingers family 2 
DPF3                  0.386   D4, zinc and double PHD fingers, family 3 
MYST3                 0.161   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.161   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.161   MYST histone acetyltransferase (monocytic leukemia)...
MYST4                 0.157   MYST histone acetyltransferase (monocytic leukemia)...
PHF10                 0.142   PHD finger protein 10 isoform b 
PHF10                 0.142   PHD finger protein 10 isoform a 
MLL3                  0.102   myeloid/lymphoid or mixed-lineage leukemia 3 
MLL2                  0.098   myeloid/lymphoid or mixed-lineage leukemia 2 
KDM5D                 0.060   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.060   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.060   jumonji, AT rich interactive domain 1D isoform 1 [H...
KDM5C                 0.059   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.059   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5A                 0.058   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.058   retinoblastoma binding protein 2 isoform 2 
KDM5B                 0.058   jumonji, AT rich interactive domain 1B 
LOC100133760          0.058   PREDICTED: similar to Jumonji, AT rich interactive ...
PHRF1                 0.058   PHD and ring finger domains 1 
BAZ2A                 0.055   bromodomain adjacent to zinc finger domain, 2A [Homo...
CHD5                  0.052   chromodomain helicase DNA binding protein 5 
BAZ1B                 0.049   bromodomain adjacent to zinc finger domain, 1B [Homo...
UHRF1                 0.047   ubiquitin-like with PHD and ring finger domains 1 i...
UHRF1                 0.047   ubiquitin-like with PHD and ring finger domains 1 i...
BAZ2B                 0.045   bromodomain adjacent to zinc finger domain, 2B [Homo...
RSF1                  0.043   remodeling and spacing factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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