Guide to the Human Genome
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Name: DPF1 Sequence: fasta or formatted (414aa) NCBI GI: 205830430
Description:

D4, zinc and double PHD fingers family 1 isoform a

Referenced in:

Neurons
PHD Finger Proteins

Other entries for this name:
alt prot [380aa] D4, zinc and double PHD fingers family 1 isoform b
alt prot [332aa] D4, zinc and double PHD fingers family 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         29           2
 C cysteine            6.3         26           1
 D aspartate           5.8         24           2
 E glutamate           8.7         36           3
 F phenylalanine       1.9          8           1
 G glycine             8.0         33           2
 H histidine           3.4         14           1
 I isoleucine          3.6         15           1
 K lysine              7.0         29           2
 L leucine             9.2         38           2
 M methionine          1.7          7           1
 N asparagine          2.9         12           2
 P proline             6.8         28           2
 Q glutamine           3.1         13           2
 R arginine            7.2         30           2
 S serine              4.6         19           1
 T threonine           5.1         21           1
 V valine              2.2          9           1
 W tryptophan          1.4          6           1
 Y tyrosine            4.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   D4, zinc and double PHD fingers family 1 isoform a ... 
DPF1                  0.853   D4, zinc and double PHD fingers family 1 isoform b ...
DPF1                  0.800   D4, zinc and double PHD fingers family 1 isoform c ...
DPF2                  0.519   D4, zinc and double PHD fingers family 2 
DPF3                  0.419   D4, zinc and double PHD fingers, family 3 
MYST3                 0.129   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.129   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.129   MYST histone acetyltransferase (monocytic leukemia)...
MYST4                 0.125   MYST histone acetyltransferase (monocytic leukemia)...
PHF10                 0.114   PHD finger protein 10 isoform b 
PHF10                 0.114   PHD finger protein 10 isoform a 
MLL3                  0.082   myeloid/lymphoid or mixed-lineage leukemia 3 
MLL2                  0.078   myeloid/lymphoid or mixed-lineage leukemia 2 
KDM5D                 0.048   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.048   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.048   jumonji, AT rich interactive domain 1D isoform 1 [H...
KDM5C                 0.047   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.047   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5A                 0.046   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.046   retinoblastoma binding protein 2 isoform 2 
KDM5B                 0.046   jumonji, AT rich interactive domain 1B 
LOC100133760          0.046   PREDICTED: similar to Jumonji, AT rich interactive ...
PHRF1                 0.046   PHD and ring finger domains 1 
BAZ2A                 0.044   bromodomain adjacent to zinc finger domain, 2A [Homo...
CHD5                  0.041   chromodomain helicase DNA binding protein 5 
BAZ1B                 0.039   bromodomain adjacent to zinc finger domain, 1B [Homo...
UHRF1                 0.038   ubiquitin-like with PHD and ring finger domains 1 i...
UHRF1                 0.038   ubiquitin-like with PHD and ring finger domains 1 i...
BAZ2B                 0.036   bromodomain adjacent to zinc finger domain, 2B [Homo...
RSF1                  0.035   remodeling and spacing factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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