Guide to the Human Genome
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Name: FAM47B Sequence: fasta or formatted (645aa) NCBI GI: 22749289
Description:

hypothetical protein LOC170062

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         30           2
 C cysteine            2.6         17           1
 D aspartate           6.0         39           2
 E glutamate           8.7         56           2
 F phenylalanine       2.9         19           1
 G glycine             3.9         25           1
 H histidine           2.6         17           1
 I isoleucine          1.9         12           1
 K lysine              8.2         53           3
 L leucine             9.3         60           3
 M methionine          2.2         14           1
 N asparagine          0.8          5           1
 P proline            12.1         78           2
 Q glutamine           3.1         20           1
 R arginine            8.8         57           4
 S serine              7.9         51           2
 T threonine           5.4         35           2
 V valine              5.1         33           1
 W tryptophan          1.2          8           1
 Y tyrosine            2.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC170062 
FAM47A                0.558   hypothetical protein LOC158724 
FAM47C                0.446   hypothetical protein LOC442444 
FAM47E                0.073   hypothetical protein LOC100129583 
LOC651986             0.045   PREDICTED: similar to forkhead box L2 
ESX1                  0.030   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
MLL2                  0.028   myeloid/lymphoid or mixed-lineage leukemia 2 
WASL                  0.027   Wiskott-Aldrich syndrome gene-like protein 
DGKK                  0.025   diacylglycerol kinase kappa 
SRRM1                 0.025   serine/arginine repetitive matrix 1 
PCDH11Y               0.022   protocadherin 11 Y-linked isoform c 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
PCDH11X               0.021   protocadherin 11 X-linked isoform d 
PCDH11X               0.021   protocadherin 11 X-linked isoform c 
PRG4                  0.020   proteoglycan 4 isoform D 
PRG4                  0.020   proteoglycan 4 isoform C 
PRG4                  0.020   proteoglycan 4 isoform B 
PRG4                  0.020   proteoglycan 4 isoform A 
WASF1                 0.020   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.020   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.020   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.020   Wiskott-Aldrich syndrome protein family member 1 [Hom...
PRAM1                 0.020   PML-RARA regulated adaptor molecule 1 
TTN                   0.020   titin isoform N2-A 
SPEG                  0.020   SPEG complex locus 
FMN1                  0.019   formin 1 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
ABI3BP                0.019   ABI gene family, member 3 (NESH) binding protein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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