Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ABI3BP Sequence: fasta or formatted (1075aa) NCBI GI: 33667044
Description:

ABI gene family, member 3 (NESH) binding protein

Referenced in:

Fibronectin Family
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         44           1
 C cysteine            1.1         12           1
 D aspartate           3.5         38           1
 E glutamate           6.1         66           2
 F phenylalanine       3.0         32           1
 G glycine             5.2         56           2
 H histidine           1.7         18           2
 I isoleucine          5.4         58           2
 K lysine              8.0         86           2
 L leucine             6.4         69           3
 M methionine          0.6          6           1
 N asparagine          3.4         37           2
 P proline            12.9        139           3
 Q glutamine           4.3         46           2
 R arginine            5.0         54           2
 S serine              8.9         96           3
 T threonine          10.9        117           2
 V valine              6.0         65           2
 W tryptophan          1.0         11           1
 Y tyrosine            2.3         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ABI gene family, member 3 (NESH) binding protein [Ho... 
FNDC1                 0.134   fibronectin type III domain containing 1 
MUC2                  0.044   mucin 2 precursor 
PRG4                  0.040   proteoglycan 4 isoform D 
PRG4                  0.040   proteoglycan 4 isoform C 
PRG4                  0.040   proteoglycan 4 isoform B 
PRG4                  0.040   proteoglycan 4 isoform A 
NACA                  0.039   nascent polypeptide-associated complex alpha subuni...
ZAN                   0.039   zonadhesin isoform 3 
ZAN                   0.039   zonadhesin isoform 6 
LOC284297             0.035   hypothetical protein LOC284297 
LOC100294420          0.033   PREDICTED: similar to mucin 2 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.028   myeloid/lymphoid or mixed-lineage leukemia 2 
MUC17                 0.028   mucin 17 
TTN                   0.027   titin isoform N2-A 
MUC7                  0.027   mucin 7, secreted precursor 
MUC7                  0.027   mucin 7, secreted precursor 
MUC7                  0.027   mucin 7, secreted precursor 
PCLO                  0.026   piccolo isoform 2 
PCLO                  0.026   piccolo isoform 1 
MUC6                  0.025   mucin 6, gastric 
DPCR1                 0.025   diffuse panbronchiolitis critical region 1 protein ...
MDC1                  0.024   mediator of DNA-damage checkpoint 1 
MUC12                 0.024   PREDICTED: mucin 12 
MUC12                 0.023   PREDICTED: mucin 12 
PRAM1                 0.023   PML-RARA regulated adaptor molecule 1 
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
KIAA0754              0.022   hypothetical protein LOC643314 
LOC100128719          0.022   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press