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Name: CACNB4 Sequence: fasta or formatted (458aa) NCBI GI: 224831262
Description:

calcium channel, voltage-dependent, beta 4 subunit isoform d

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [520aa] calcium channel, voltage-dependent, beta 4 subunit isoform b
alt prot [502aa] calcium channel, voltage-dependent, beta 4 subunit isoform c
alt prot [486aa] calcium channel, voltage-dependent, beta 4 subunit isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         28           2
 C cysteine            0.7          3           1
 D aspartate           5.5         25           1
 E glutamate           5.7         26           2
 F phenylalanine       2.4         11           1
 G glycine             4.8         22           2
 H histidine           3.5         16           1
 I isoleucine          5.2         24           2
 K lysine              6.1         28           1
 L leucine             7.0         32           1
 M methionine          1.5          7           2
 N asparagine          3.7         17           2
 P proline             5.5         25           2
 Q glutamine           4.8         22           2
 R arginine            9.2         42           2
 S serine             13.8         63           4
 T threonine           5.5         25           3
 V valine              6.1         28           2
 W tryptophan          0.4          2           2
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, beta 4 subunit ... 
CACNB4                0.947   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.898   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.840   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB2                0.609   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.585   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.585   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB1                0.584   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.584   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB2                0.579   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.579   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.563   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.563   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB3                0.560   calcium channel, voltage-dependent, beta 3 subunit [...
CACNB2                0.559   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB1                0.548   calcium channel, voltage-dependent, beta 1 subunit i...
DLG3                  0.023   synapse-associated protein 102 isoform a 
DLG3                  0.022   synapse-associated protein 102 isoform b 
DLG1                  0.019   discs, large homolog 1 isoform 1 
DLG4                  0.017   post-synaptic density protein 95 isoform 1 
DLG4                  0.017   post-synaptic density protein 95 isoform 2 
DLG1                  0.015   discs, large homolog 1 isoform 2 
DLG2                  0.015   chapsyn-110 isoform 3 
DLG2                  0.015   chapsyn-110 isoform 4 
MPP6                  0.014   membrane protein, palmitoylated 6 
DLG2                  0.014   chapsyn-110 isoform 1 
DLG2                  0.014   chapsyn-110 isoform 2 
MPP5                  0.013   membrane protein, palmitoylated 5 
CASK                  0.013   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.013   calcium/calmodulin-dependent serine protein kinase ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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