Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CACNB2 Sequence: fasta or formatted (622aa) NCBI GI: 147901383
Description:

calcium channel, voltage-dependent, beta 2 subunit isoform 5

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [660aa] calcium channel, voltage-dependent, beta 2 subunit isoform 2
alt prot [608aa] calcium channel, voltage-dependent, beta 2 subunit isoform 8
alt prot [632aa] calcium channel, voltage-dependent, beta 2 subunit isoform 6
alt prot [606aa] calcium channel, voltage-dependent, beta 2 subunit isoform 3
alt prot [605aa] calcium channel, voltage-dependent, beta 2 subunit isoform 1
alt prot [612aa] calcium channel, voltage-dependent, beta 2 subunit isoform 7
alt prot [636aa] calcium channel, voltage-dependent, beta 2 subunit isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         52           4
 C cysteine            0.8          5           1
 D aspartate           6.3         39           2
 E glutamate           7.4         46           3
 F phenylalanine       2.3         14           1
 G glycine             4.2         26           2
 H histidine           4.2         26           2
 I isoleucine          3.5         22           2
 K lysine              6.6         41           2
 L leucine             6.4         40           2
 M methionine          1.4          9           2
 N asparagine          3.5         22           2
 P proline             5.5         34           2
 Q glutamine           5.1         32           1
 R arginine            7.9         49           2
 S serine             13.2         82           4
 T threonine           4.2         26           2
 V valine              6.3         39           2
 W tryptophan          0.6          4           2
 Y tyrosine            2.3         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, beta 2 subunit ... 
CACNB2                0.982   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.978   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.921   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.917   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.868   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.867   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.867   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB1                0.604   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.557   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.529   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB4                0.523   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.523   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.508   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.443   calcium channel, voltage-dependent, beta 4 subunit ...
CACNB3                0.439   calcium channel, voltage-dependent, beta 3 subunit [...
GPATCH8               0.027   G patch domain containing 8 
DLG3                  0.026   synapse-associated protein 102 isoform b 
DLG1                  0.025   discs, large homolog 1 isoform 1 
DLG3                  0.023   synapse-associated protein 102 isoform a 
DLG1                  0.022   discs, large homolog 1 isoform 2 
HRC                   0.021   histidine rich calcium binding protein precursor [Hom...
DLG2                  0.020   chapsyn-110 isoform 1 
DLG2                  0.020   chapsyn-110 isoform 2 
SRRM2                 0.020   splicing coactivator subunit SRm300 
CCNL1                 0.019   cyclin L1 
RSRC2                 0.018   arginine/serine-rich coiled-coil 2 isoform a 
DLG2                  0.018   chapsyn-110 isoform 3 
DLG2                  0.018   chapsyn-110 isoform 4 
PRPF38B               0.017   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press