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Name: CACNB2 Sequence: fasta or formatted (632aa) NCBI GI: 148223541
Description:

calcium channel, voltage-dependent, beta 2 subunit isoform 6

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [660aa] calcium channel, voltage-dependent, beta 2 subunit isoform 2
alt prot [622aa] calcium channel, voltage-dependent, beta 2 subunit isoform 5
alt prot [608aa] calcium channel, voltage-dependent, beta 2 subunit isoform 8
alt prot [606aa] calcium channel, voltage-dependent, beta 2 subunit isoform 3
alt prot [605aa] calcium channel, voltage-dependent, beta 2 subunit isoform 1
alt prot [612aa] calcium channel, voltage-dependent, beta 2 subunit isoform 7
alt prot [636aa] calcium channel, voltage-dependent, beta 2 subunit isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         45           2
 C cysteine            0.8          5           1
 D aspartate           6.8         43           2
 E glutamate           7.3         46           3
 F phenylalanine       2.5         16           2
 G glycine             4.3         27           2
 H histidine           4.4         28           2
 I isoleucine          4.0         25           2
 K lysine              6.8         43           2
 L leucine             6.5         41           2
 M methionine          1.3          8           2
 N asparagine          4.0         25           2
 P proline             5.7         36           2
 Q glutamine           4.3         27           1
 R arginine            7.9         50           2
 S serine             13.4         85           4
 T threonine           4.3         27           2
 V valine              5.9         37           2
 W tryptophan          0.6          4           2
 Y tyrosine            2.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, beta 2 subunit ... 
CACNB2                0.981   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.933   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.933   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.933   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.914   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.897   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.896   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB1                0.567   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.555   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.521   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB4                0.490   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.490   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.475   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.411   calcium channel, voltage-dependent, beta 4 subunit ...
CACNB3                0.411   calcium channel, voltage-dependent, beta 3 subunit [...
GPATCH8               0.027   G patch domain containing 8 
DLG3                  0.023   synapse-associated protein 102 isoform b 
DLG1                  0.022   discs, large homolog 1 isoform 2 
HRC                   0.020   histidine rich calcium binding protein precursor [Hom...
SRRM2                 0.019   splicing coactivator subunit SRm300 
CCNL1                 0.019   cyclin L1 
RSRC2                 0.018   arginine/serine-rich coiled-coil 2 isoform a 
PRPF38B               0.017   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
CCDC55                0.016   coiled-coil domain containing 55 isoform 1 
SFRS8                 0.016   splicing factor, arginine/serine-rich 8 
LOC100170229          0.015   hypothetical protein LOC100170229 
LOC100286959          0.015   PREDICTED: hypothetical protein XP_002343921 
RNASEN                0.015   ribonuclease III, nuclear isoform 2 
RNASEN                0.015   ribonuclease III, nuclear isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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