Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CACNB2 Sequence: fasta or formatted (608aa) NCBI GI: 147904948
Description:

calcium channel, voltage-dependent, beta 2 subunit isoform 8

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [660aa] calcium channel, voltage-dependent, beta 2 subunit isoform 2
alt prot [622aa] calcium channel, voltage-dependent, beta 2 subunit isoform 5
alt prot [632aa] calcium channel, voltage-dependent, beta 2 subunit isoform 6
alt prot [606aa] calcium channel, voltage-dependent, beta 2 subunit isoform 3
alt prot [605aa] calcium channel, voltage-dependent, beta 2 subunit isoform 1
alt prot [612aa] calcium channel, voltage-dependent, beta 2 subunit isoform 7
alt prot [636aa] calcium channel, voltage-dependent, beta 2 subunit isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         43           2
 C cysteine            0.8          5           1
 D aspartate           6.7         41           2
 E glutamate           7.2         44           3
 F phenylalanine       2.6         16           1
 G glycine             4.6         28           2
 H histidine           4.3         26           2
 I isoleucine          3.6         22           2
 K lysine              6.6         40           2
 L leucine             6.7         41           2
 M methionine          1.2          7           2
 N asparagine          3.6         22           2
 P proline             5.1         31           2
 Q glutamine           4.8         29           1
 R arginine            8.1         49           2
 S serine             13.3         81           4
 T threonine           4.4         27           2
 V valine              5.9         36           2
 W tryptophan          1.0          6           2
 Y tyrosine            2.3         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, beta 2 subunit ... 
CACNB2                0.981   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.948   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.935   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.930   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.879   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.878   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.878   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB1                0.592   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.544   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.539   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB4                0.513   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.513   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.498   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.431   calcium channel, voltage-dependent, beta 4 subunit ...
CACNB3                0.430   calcium channel, voltage-dependent, beta 3 subunit [...
GPATCH8               0.028   G patch domain containing 8 
DLG3                  0.023   synapse-associated protein 102 isoform a 
DLG1                  0.022   discs, large homolog 1 isoform 1 
DLG1                  0.021   discs, large homolog 1 isoform 2 
HRC                   0.021   histidine rich calcium binding protein precursor [Hom...
SRRM2                 0.020   splicing coactivator subunit SRm300 
DLG2                  0.019   chapsyn-110 isoform 1 
DLG2                  0.019   chapsyn-110 isoform 2 
CCNL1                 0.019   cyclin L1 
RSRC2                 0.018   arginine/serine-rich coiled-coil 2 isoform a 
PRPF38B               0.018   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
CCDC55                0.017   coiled-coil domain containing 55 isoform 1 
SFRS8                 0.017   splicing factor, arginine/serine-rich 8 
LOC100170229          0.016   hypothetical protein LOC100170229 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press