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Name: CACNB3 Sequence: fasta or formatted (484aa) NCBI GI: 40316928
Description:

calcium channel, voltage-dependent, beta 3 subunit

Referenced in:

Calcium and TRP Cation Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         34           1
 C cysteine            0.8          4           1
 D aspartate           6.8         33           2
 E glutamate           7.6         37           2
 F phenylalanine       2.3         11           1
 G glycine             5.0         24           2
 H histidine           3.3         16           2
 I isoleucine          3.9         19           2
 K lysine              5.0         24           1
 L leucine             8.9         43           2
 M methionine          1.7          8           2
 N asparagine          2.9         14           2
 P proline             7.0         34           3
 Q glutamine           6.4         31           3
 R arginine            7.4         36           2
 S serine             11.2         54           2
 T threonine           2.5         12           1
 V valine              6.2         30           2
 W tryptophan          1.2          6           2
 Y tyrosine            2.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, beta 3 subunit [... 
CACNB4                0.629   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.608   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.608   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB2                0.560   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.540   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.540   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.535   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.535   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.535   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.535   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.535   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB1                0.535   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.534   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB4                0.518   calcium channel, voltage-dependent, beta 4 subunit ...
CACNB1                0.503   calcium channel, voltage-dependent, beta 1 subunit i...
DLG3                  0.031   synapse-associated protein 102 isoform a 
DLG1                  0.027   discs, large homolog 1 isoform 1 
DLG4                  0.022   post-synaptic density protein 95 isoform 1 
DLG4                  0.022   post-synaptic density protein 95 isoform 2 
DLG3                  0.021   synapse-associated protein 102 isoform b 
DLG1                  0.021   discs, large homolog 1 isoform 2 
DLG2                  0.018   chapsyn-110 isoform 3 
DLG2                  0.018   chapsyn-110 isoform 4 
CASK                  0.017   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.017   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.017   calcium/calmodulin-dependent serine protein kinase ...
DLG2                  0.016   chapsyn-110 isoform 1 
DLG2                  0.016   chapsyn-110 isoform 2 
MPP5                  0.016   membrane protein, palmitoylated 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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