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Search of human proteins with 224591401
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224591401 phosphatidylinositol 4-kinase type 2 beta [Homo
sapiens]
(481 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224591401 phosphatidylinositol 4-kinase type 2 beta [Homo sap... 993 0.0
gi|13559514 phosphatidylinositol 4-kinase type 2 alpha [Homo sap... 560 e-159
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 37 0.040
gi|171543850 RUN domain containing 1 [Homo sapiens] 34 0.34
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 33 0.44
gi|112807221 N-acetylgalactosaminyltransferase 12 [Homo sapiens] 33 0.57
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 33 0.57
gi|4757760 adiponectin precursor [Homo sapiens] 33 0.75
gi|66932918 MER receptor tyrosine kinase precursor [Homo sapiens] 33 0.75
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 33 0.75
gi|185136021 spinster homolog 2 [Homo sapiens] 32 0.98
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 32 0.98
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 32 0.98
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 32 0.98
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 32 0.98
gi|88758613 CD93 antigen precursor [Homo sapiens] 32 1.7
gi|31543148 hypothetical protein LOC79173 [Homo sapiens] 32 1.7
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 31 2.2
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 31 2.2
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 31 2.2
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 31 2.2
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 31 2.2
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 31 2.2
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 31 2.2
gi|169167057 PREDICTED: hypothetical protein [Homo sapiens] 31 2.9
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 31 2.9
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 31 2.9
gi|165905591 LIM domain and actin binding 1 isoform c [Homo sapi... 31 2.9
gi|165905589 LIM domain and actin binding 1 isoform a [Homo sapi... 31 2.9
gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens] 31 2.9
>gi|224591401 phosphatidylinositol 4-kinase type 2 beta [Homo
sapiens]
Length = 481
Score = 993 bits (2566), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MEDPSEPDRLASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAG 60
MEDPSEPDRLASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAG
Sbjct: 1 MEDPSEPDRLASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAG 60
Query: 61 DEELPLPPGDVGVSRSSSAELDRSRPAVSVTIGTSEMNAFLDDPEFADIMLRAEQAIEVG 120
DEELPLPPGDVGVSRSSSAELDRSRPAVSVTIGTSEMNAFLDDPEFADIMLRAEQAIEVG
Sbjct: 61 DEELPLPPGDVGVSRSSSAELDRSRPAVSVTIGTSEMNAFLDDPEFADIMLRAEQAIEVG 120
Query: 121 IFPERISQGSSGSYFVKDPKRKIIGVFKPKSEEPYGQLNPKWTKYVHKVCCPCCFGRGCL 180
IFPERISQGSSGSYFVKDPKRKIIGVFKPKSEEPYGQLNPKWTKYVHKVCCPCCFGRGCL
Sbjct: 121 IFPERISQGSSGSYFVKDPKRKIIGVFKPKSEEPYGQLNPKWTKYVHKVCCPCCFGRGCL 180
Query: 181 IPNQGYLSEAGAYLVDNKLHLSIVPKTKVVWLVSETFNYNAIDRAKSRGKKYALEKVPKV 240
IPNQGYLSEAGAYLVDNKLHLSIVPKTKVVWLVSETFNYNAIDRAKSRGKKYALEKVPKV
Sbjct: 181 IPNQGYLSEAGAYLVDNKLHLSIVPKTKVVWLVSETFNYNAIDRAKSRGKKYALEKVPKV 240
Query: 241 GRKFHRIGLPPKIGSFQLFVEGYKEAEYWLRKFEADPLPENIRKQFQSQFERLVILDYII 300
GRKFHRIGLPPKIGSFQLFVEGYKEAEYWLRKFEADPLPENIRKQFQSQFERLVILDYII
Sbjct: 241 GRKFHRIGLPPKIGSFQLFVEGYKEAEYWLRKFEADPLPENIRKQFQSQFERLVILDYII 300
Query: 301 RNTDRGNDNWLVRYEKQKCEKEIDHKESKWIDDEEFLIKIAAIDNGLAFPFKHPDEWRAY 360
RNTDRGNDNWLVRYEKQKCEKEIDHKESKWIDDEEFLIKIAAIDNGLAFPFKHPDEWRAY
Sbjct: 301 RNTDRGNDNWLVRYEKQKCEKEIDHKESKWIDDEEFLIKIAAIDNGLAFPFKHPDEWRAY 360
Query: 361 PFHWAWLPQAKVPFSEEIRNLILPYISDMNFVQDLCEDLYELFKTDKGFDKATFESQMSV 420
PFHWAWLPQAKVPFSEEIRNLILPYISDMNFVQDLCEDLYELFKTDKGFDKATFESQMSV
Sbjct: 361 PFHWAWLPQAKVPFSEEIRNLILPYISDMNFVQDLCEDLYELFKTDKGFDKATFESQMSV 420
Query: 421 MRGQILNLTQALRDGKSPFQLVQIPCVIVERSQGGSQGRIVHLSNSFTQTVNCRKPFFSS 480
MRGQILNLTQALRDGKSPFQLVQIPCVIVERSQGGSQGRIVHLSNSFTQTVNCRKPFFSS
Sbjct: 421 MRGQILNLTQALRDGKSPFQLVQIPCVIVERSQGGSQGRIVHLSNSFTQTVNCRKPFFSS 480
Query: 481 W 481
W
Sbjct: 481 W 481
>gi|13559514 phosphatidylinositol 4-kinase type 2 alpha [Homo
sapiens]
Length = 479
Score = 560 bits (1443), Expect = e-159
Identities = 285/463 (61%), Positives = 341/463 (73%), Gaps = 39/463 (8%)
Query: 43 PGSAVRLLDAAGEEGEAGDEELPLPPGDVGVSRSSSAELDRSRPAVSV----TIGTS--- 95
PG AVR+ AAG P PPG G R LDR+R A + T+
Sbjct: 32 PGGAVRVAAAAGSG--------PSPPGSPGHDRERQPLLDRARGAAAQGQTQTVAAQAQA 83
Query: 96 ----------------EMNAFLDDPEFADIMLRAEQAIEVGIFPERISQGSSGSYFVKDP 139
E N F +DPEF ++ +AE AIE IFPERI QGSSGSYFVKDP
Sbjct: 84 LAAQAAAAAHAAQAHRERNEFPEDPEFEAVVRQAELAIERCIFPERIYQGSSGSYFVKDP 143
Query: 140 KRKIIGVFKPKSEEPYGQLNPKWTKYVHKVCCPCCFGRGCLIPNQGYLSEAGAYLVDNKL 199
+ +II VFKPK+EEPYG LNPKWTK++ K+CCPCCFGR CL+ NQGYLSEAGA LVD KL
Sbjct: 144 QGRIIAVFKPKNEEPYGHLNPKWTKWLQKLCCPCCFGRDCLVLNQGYLSEAGASLVDQKL 203
Query: 200 HLSIVPKTKVVWLVSETFNYNAIDRAKSRGKKYALEKVPKVGRKFHRIGLPPKIGSFQLF 259
L+IVP+TKVV+L SETFNY+AIDR KSRGK+ ALEKVPKVG++F+RIGLPPK+GSFQLF
Sbjct: 204 ELNIVPRTKVVYLASETFNYSAIDRVKSRGKRLALEKVPKVGQRFNRIGLPPKVGSFQLF 263
Query: 260 VEGYKEAEYWLRKFEADPLPENIRKQFQSQFERLVILDYIIRNTDRGNDNWLVRYEKQKC 319
VEGYK+A+YWLR+FEA+PLPEN +Q QFERLV+LDYIIRNTDRGNDNWL++Y+ C
Sbjct: 264 VEGYKDADYWLRRFEAEPLPENTNRQLLLQFERLVVLDYIIRNTDRGNDNWLIKYD---C 320
Query: 320 EKE-IDHKESKWIDDEEFLIKIAAIDNGLAFPFKHPDEWRAYPFHWAWLPQAKVPFSEEI 378
+ +++ W+ +E +IK+AAIDNGLAFP KHPD WRAYPF+WAWLPQAKVPFS+EI
Sbjct: 321 PMDSSSSRDTDWVVVKEPVIKVAAIDNGLAFPLKHPDSWRAYPFYWAWLPQAKVPFSQEI 380
Query: 379 RNLILPYISDMNFVQDLCEDLYELFKTDKGFDKATFESQMSVMRGQILNLTQALRDGKSP 438
++LILP ISD NFV+DL EDLYELFK D GFD+ F Q++VMRGQILNLTQAL+D KSP
Sbjct: 381 KDLILPKISDPNFVKDLEEDLYELFKKDPGFDRGQFHKQIAVMRGQILNLTQALKDNKSP 440
Query: 439 FQLVQIPCVIVERSQGGSQGRIVHLSNSFTQTVNCRKPFFSSW 481
LVQ+P VIVE ++ + S S+TQ+ RKPFFS W
Sbjct: 441 LHLVQMPPVIVETARSHQRSS----SESYTQSFQSRKPFFSWW 479
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 37.0 bits (84), Expect = 0.040
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 4 PSEPDRLASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAGDEE 63
P P RL G+ E+ E G+R PR P G PG A GE G G
Sbjct: 1702 PGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDP--GLPG-------APGERGIEGFRG 1752
Query: 64 LPLPPGDVGVSRSSSAELDRSRPAV 88
P P GD GV + + DR P +
Sbjct: 1753 PPGPQGDPGVRGPAGEKGDRGPPGL 1777
Score = 31.2 bits (69), Expect = 2.2
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 4 PSEPDRLASADGGSPEEEEDGER-EPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAGDE 62
P P DG E+ ++G +P LP A RGAPG G GE GD+
Sbjct: 1623 PPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPG-------VRGPVGEKGDQ 1675
Query: 63 ELPLPPGDVGVSRSSSAELDRSRP 86
P G G SS + DR P
Sbjct: 1676 GDPGEDGRNGSPGSSGPKGDRGEP 1699
Score = 29.6 bits (65), Expect = 6.4
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 14 DGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAGDEELPLPPGDVGV 73
D G P E+ D P R P V GE GE GDE PPGD G+
Sbjct: 1608 DSGPPGEKGD--------------PGRPGPPGPVGPRGRDGEVGEKGDEG---PPGDPGL 1650
Query: 74 SRSSSAELDRSRPAVSVTIG 93
+ R P V +G
Sbjct: 1651 PGKAGERGLRGAPGVRGPVG 1670
>gi|171543850 RUN domain containing 1 [Homo sapiens]
Length = 613
Score = 33.9 bits (76), Expect = 0.34
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 1 MEDPSEPDRLASADGGSPEEEEDGEREPLLP--RIAWA---HPRRGAPGSAVRLLDAAGE 55
+E +EP + +A G ++EE+ E EPL P + WA PG+ L +A E
Sbjct: 4 VEAAAEPVTVVAAVGPKAKDEEEEEEEPLPPCEAVRWAPVGAVAEARPGATAFLEEATAE 63
Query: 56 EGEAGDEELPLPPG 69
E A P PG
Sbjct: 64 EPGAAPGSPPDSPG 77
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.5 bits (75), Expect = 0.44
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 11 ASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAV-RLLDAAGEEGEAGD--EELPLP 67
+S DGG E + P A P G PGS R A +G+ + E PLP
Sbjct: 1670 SSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPREQPLP 1729
Query: 68 PGDVGVSRSSSAELDRS--------RPAVSVTIGTSEMNAFL 101
PG +G RS + RP V GTS+ ++ L
Sbjct: 1730 PGPIGTERSQRTDRGTEPGPIRPSHRPGPPVQFGTSDKDSDL 1771
>gi|112807221 N-acetylgalactosaminyltransferase 12 [Homo sapiens]
Length = 581
Score = 33.1 bits (74), Expect = 0.57
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 12 SADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAGDEELPLPPGDV 71
+A+ G P G REP++PR GA G AVR L GEE +E + L +
Sbjct: 47 AAEPGPPRTPRPGRREPVMPRPPVPANALGARGEAVR-LQLQGEELRLQEESVRL--HQI 103
Query: 72 GVSRSSSAELDRSRP 86
+ S L R P
Sbjct: 104 NIYLSDRISLHRRLP 118
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 33.1 bits (74), Expect = 0.57
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 280 ENIRKQFQSQFERLVI-----------LDYIIRNTDRGNDNWLVRYEKQKCEKEIDHKES 328
E +++ Q++ E L+I LD RN D+ W +YE+ + E E KES
Sbjct: 1419 EKTKQRLQNEVEDLMIDVERSNAACIALDKKQRNFDKVLAEWKQKYEETQAELEASQKES 1478
Query: 329 KWIDDEEFLIKIA 341
+ + E F +K A
Sbjct: 1479 RSLSTELFKVKNA 1491
>gi|4757760 adiponectin precursor [Homo sapiens]
Length = 244
Score = 32.7 bits (73), Expect = 0.75
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 37 HP-RRGAPGSAVRLLDAAGEEGEAGDEELPLPPGDVGVSRSSSAELDRSRPAVSVTIGTS 95
HP GAPG R GE+GE GD L P GD+G + AE R P + G
Sbjct: 46 HPGHNGAPGRDGRD-GTPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEP 104
Query: 96 EMNAFL 101
A++
Sbjct: 105 GEGAYV 110
>gi|66932918 MER receptor tyrosine kinase precursor [Homo sapiens]
Length = 999
Score = 32.7 bits (73), Expect = 0.75
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 392 VQDLCEDLYELFKTDKGFDKATFESQMSVMRGQILNLTQALRDGKSPFQLVQIPCVIVER 451
+ +L E +Y ++TD D+ TF SV+R Q+ L ++L D ++ ++ + ++E
Sbjct: 826 LDELYEIMYSCWRTDP-LDRPTF----SVLRLQLEKLLESLPDVRNQADVIYVNTQLLES 880
Query: 452 SQGGSQG 458
S+G +QG
Sbjct: 881 SEGLAQG 887
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 32.7 bits (73), Expect = 0.75
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 280 ENIRKQFQSQFERLVI-----------LDYIIRNTDRGNDNWLVRYEKQKCEKEIDHKES 328
E +++ Q++ E L++ LD RN D+ W +YE+ + E E KES
Sbjct: 1418 EKTKQRLQNEVEDLMLDVERSNAACAALDKKQRNFDKVLSEWKQKYEETQAELEASQKES 1477
Query: 329 KWIDDEEFLIK 339
+ + E F +K
Sbjct: 1478 RSLSTELFKVK 1488
>gi|185136021 spinster homolog 2 [Homo sapiens]
Length = 549
Score = 32.3 bits (72), Expect = 0.98
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 29/129 (22%)
Query: 11 ASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEG--EAGDEELPL-- 66
++A GG+ EEE D ER R +RGA GS AG G AGDE L
Sbjct: 8 SAAAGGAEEEEADAER-----RRRRRGAQRGAGGSGCCGARGAGGAGVSAAGDEVQTLSG 62
Query: 67 --------PPG------------DVGVSRSSSAELDRSRPAVSVTIGTSEMNAFLDDPEF 106
PPG G + A L R R A + + + +LD
Sbjct: 63 SVRRAPTGPPGTPGTPGCAATAKGPGAQQPKPASLGRGRGAAAAILSLGNVLNYLDRYTV 122
Query: 107 ADIMLRAEQ 115
A ++L +Q
Sbjct: 123 AGVLLDIQQ 131
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 32.3 bits (72), Expect = 0.98
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 4 PSEPDRLASADGGSPEEEEDGEREPLLPRIA----------WAHPRRGAPGSAVRLLDAA 53
P P L G E+ E+G+ P+ P A +G PGS V +
Sbjct: 1205 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS-VGSVGGV 1263
Query: 54 GEEGEAGDEELPLPPGDVGV 73
GE+GE G+ P PPG+ GV
Sbjct: 1264 GEKGEPGEAGNPGPPGEAGV 1283
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 32.3 bits (72), Expect = 0.98
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 4 PSEPDRLASADGGSPEEEEDGEREPLLPRIA----------WAHPRRGAPGSAVRLLDAA 53
P P L G E+ E+G+ P+ P A +G PGS V +
Sbjct: 1154 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS-VGSVGGV 1212
Query: 54 GEEGEAGDEELPLPPGDVGV 73
GE+GE G+ P PPG+ GV
Sbjct: 1213 GEKGEPGEAGNPGPPGEAGV 1232
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 32.3 bits (72), Expect = 0.98
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 4 PSEPDRLASADGGSPEEEEDGEREPLLPRIA----------WAHPRRGAPGSAVRLLDAA 53
P P L G E+ E+G+ P+ P A +G PGS V +
Sbjct: 1193 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS-VGSVGGV 1251
Query: 54 GEEGEAGDEELPLPPGDVGV 73
GE+GE G+ P PPG+ GV
Sbjct: 1252 GEKGEPGEAGNPGPPGEAGV 1271
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 32.3 bits (72), Expect = 0.98
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 23/138 (16%)
Query: 12 SADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAG------EEGEAGDEELP 65
SAD GS ++ +D P + G + ++G EEGE G + +P
Sbjct: 1809 SADAGSQKDSDDSAATPQDETVEERGRNEGLSSGTLSKSSSSGMQSCGEEEGEEGADAVP 1868
Query: 66 LPPGDVGVSRSSSAELDRS----------RPAVSVTIGTSEMNAFLDDPEFADIMLRAEQ 115
LPP + + + S + D RP S T +E+ + +++ +++++
Sbjct: 1869 LPP-PMAIQQHSLLQPDSQDDKASSRLLVRPTSSETPSAAELVSAIEE------LVKSKM 1921
Query: 116 AIEVGIFPERISQGSSGS 133
A+E + QG S S
Sbjct: 1922 ALEDRPSSLLVDQGDSSS 1939
Score = 29.6 bits (65), Expect = 6.4
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 4 PSEPDRLASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAGDEE 63
PS P R G+ E + E EP+ PR+GA ++ DA ++ A
Sbjct: 2387 PSAPSRRPP---GADAEGSEREAEPIPKMKVLESPRKGAANASGSSPDAPAKDARASLGT 2443
Query: 64 LPLPPGDVGVSRSSSAELDRSRPAV 88
LPL G + ++ L + P++
Sbjct: 2444 LPLGKPRAGAASPLNSPLSSAVPSL 2468
>gi|88758613 CD93 antigen precursor [Homo sapiens]
Length = 652
Score = 31.6 bits (70), Expect = 1.7
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 16 GSPEEEEDGERE-PLLPRIAWAHPRRGAPGS--AVRLLDAAGEEGEAGDEELPL----PP 68
G P+EE+ GE+E +PR A A P RG G+ A +A PL P
Sbjct: 479 GPPDEEDKGEKEGSTVPRAATASPTRGPEGTPKATPTTSRPSLSSDAPITSAPLKMLAPS 538
Query: 69 GDVGVSRSSS 78
G GV R S
Sbjct: 539 GSPGVWREPS 548
>gi|31543148 hypothetical protein LOC79173 [Homo sapiens]
Length = 637
Score = 31.6 bits (70), Expect = 1.7
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 3 DPSEPDRLASADGGSPEEEEDGEREPLLP-----RIAWAHPRRGAPGSAVRLLDAAGEEG 57
DP+E + A G DG+ + P + A RR PG + GE G
Sbjct: 345 DPTELEERALEVAGP-----DGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESG 399
Query: 58 EAGDEELPLPPGDVGVSRSSSAEL 81
EAG + PPGDV V ++S L
Sbjct: 400 EAGQD--GKPPGDVLVGPTASLAL 421
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 31.2 bits (69), Expect = 2.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 4 PSEPDRLASADGGSPEEE--EDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAGD 61
P +P + D GS + + + GE+ + P RG PG+ G++G+AG
Sbjct: 932 PGKPGSMDKVDMGSMKGQKGDQGEKGQIGP--IGEKGSRGDPGTP----GVPGKDGQAGQ 985
Query: 62 EELPLPPGDVGVSRSSSA 79
P P GD G+S + A
Sbjct: 986 PGQPGPKGDPGISGTPGA 1003
>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
Length = 1950
Score = 31.2 bits (69), Expect = 2.2
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 41 GAPGSAVRLLDAAGEEGEAGDEELP-LPPGDVGVSRSSSAELDRSRPAVSVTIGTS 95
GAPG A D +G+ +AG + PPG SSS + D+ +P S G +
Sbjct: 92 GAPGKAE---DKSGDSQDAGSSKSEDTPPGGFFYGSSSSGDSDKKKPLFSFEFGAT 144
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 31.2 bits (69), Expect = 2.2
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 216 TFNYNAIDRAKSRGKKYALEKVPKVGRKFHRI------GLPPKIGSFQLFVEGYKEAEYW 269
T N N++ R KK+ + V K+GR ++ L P+ + VE ++
Sbjct: 109 TENINSLVRTSKEEKKHEIHLVQKLGRSLFKLKNQTAEPLAPQPPAGPSKVEQLQDETNH 168
Query: 270 LRKFEADPLPENIRKQFQSQFERLVILDYIIRNTD---RGNDNWLVRYEKQKCEKE--ID 324
LRK E++ +Q Q++ E +L + R + R + L E++ CE+E +
Sbjct: 169 LRK-----ELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQEERLCEQEERLC 223
Query: 325 HKESKWIDDEEFL 337
+E + + EE L
Sbjct: 224 EQEERLREQEERL 236
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 31.2 bits (69), Expect = 2.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 34 AWAHPRRGAPGSAVRLLDAAGEEGEAGDEELPLPPGDVG 72
A A +G PG + L+ GE+GE GD LP P G G
Sbjct: 1318 AGAKGEKGHPG-LIGLIGPPGEQGEKGDRGLPGPQGSPG 1355
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 31.2 bits (69), Expect = 2.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 34 AWAHPRRGAPGSAVRLLDAAGEEGEAGDEELPLPPGDVG 72
A A +G PG + L+ GE+GE GD LP P G G
Sbjct: 1297 AGAKGEKGHPG-LIGLIGPPGEQGEKGDRGLPGPQGSPG 1334
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 31.2 bits (69), Expect = 2.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 34 AWAHPRRGAPGSAVRLLDAAGEEGEAGDEELPLPPGDVG 72
A A +G PG + L+ GE+GE GD LP P G G
Sbjct: 1404 AGAKGEKGHPG-LIGLIGPPGEQGEKGDRGLPGPQGSPG 1441
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 31.2 bits (69), Expect = 2.2
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 216 TFNYNAIDRAKSRGKKYALEKVPKVGRKFHRI------GLPPKIGSFQLFVEGYKEAEYW 269
T N N++ R KK+ + V K+GR ++ L P+ + VE ++
Sbjct: 109 TENINSLVRTSKEEKKHEIHLVQKLGRSLFKLKNQTAEPLAPQPPAGPSKVEQLQDETNH 168
Query: 270 LRKFEADPLPENIRKQFQSQFERLVILDYIIRNTD---RGNDNWLVRYEKQKCEKE--ID 324
LRK E++ +Q Q++ E +L + R + R + L E++ CE+E +
Sbjct: 169 LRK-----ELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQEERLCEQEERLC 223
Query: 325 HKESKWIDDEEFL 337
+E + + EE L
Sbjct: 224 EQEERLREQEERL 236
>gi|169167057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 30.8 bits (68), Expect = 2.9
Identities = 36/109 (33%), Positives = 45/109 (41%), Gaps = 25/109 (22%)
Query: 4 PSEPDRLASADGGSPEEEEDGERE-------PL-------LPRIAWAHPRRGAP------ 43
P R +SA+ G E+ +D E PL LPR A AHPRR P
Sbjct: 148 PPREKRASSAEPGHWEKRQDKRLETHPCRAPPLPPARRSPLPRAACAHPRRPRPLAGTTF 207
Query: 44 GSAVRLLDAAGEEGEAGD-EELPLPPGDVGVSRSSSAELDRSRP-AVSV 90
R+L G GD PL P R++SA L + P A+SV
Sbjct: 208 CGGARVLSNPPPSGSGGDARPSPLVPRR---CRATSASLPQETPFALSV 253
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 41 GAPGSAVRLLDAAGEEGEAGDEELP-LPPGDVGVSRSSSAELDRSRPAVSVTIGTS 95
GAPG A D +G+ +AG + PPG SSS + D+ +P S G +
Sbjct: 103 GAPGKAE---DKSGDSQDAGGSKSEDTPPGGFFYGSSSSGDSDKKKPLFSFEFGAT 155
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 41 GAPGSAVRLLDAAGEEGEAGDEELP-LPPGDVGVSRSSSAELDRSRPAVSVTIGTS 95
GAPG A D +G+ +AG + PPG SSS + D+ +P S G +
Sbjct: 103 GAPGKAE---DKSGDSQDAGGSKSEDTPPGGFFYGSSSSGDSDKKKPLFSFEFGAT 155
>gi|165905591 LIM domain and actin binding 1 isoform c [Homo
sapiens]
Length = 600
Score = 30.8 bits (68), Expect = 2.9
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 13 ADGGSPEEEEDGEREPLLPRIAWAHPRR-GAPGSAVRLLDAAGEEGEAGDEELPLP--PG 69
A S +E+ED E RIAW P G+ GSA+ + ++E+ P P
Sbjct: 351 AKASSQQEKEDKPAETKKLRIAWPPPTELGSSGSALEEGIKMSKPKWPPEDEISKPEVPE 410
Query: 70 DVGVS----RSSSAELDRSRPAVSVTIGTSEMNAFLDDPE 105
DV + R SS+ +RSRP T+ S + + P+
Sbjct: 411 DVDLDLKKLRRSSSLKERSRP---FTVAASFQSTSVKSPK 447
>gi|165905589 LIM domain and actin binding 1 isoform a [Homo
sapiens]
Length = 760
Score = 30.8 bits (68), Expect = 2.9
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 13 ADGGSPEEEEDGEREPLLPRIAWAHPRR-GAPGSAVRLLDAAGEEGEAGDEELPLP--PG 69
A S +E+ED E RIAW P G+ GSA+ + ++E+ P P
Sbjct: 511 AKASSQQEKEDKPAETKKLRIAWPPPTELGSSGSALEEGIKMSKPKWPPEDEISKPEVPE 570
Query: 70 DVGVS----RSSSAELDRSRPAVSVTIGTSEMNAFLDDPE 105
DV + R SS+ +RSRP T+ S + + P+
Sbjct: 571 DVDLDLKKLRRSSSLKERSRP---FTVAASFQSTSVKSPK 607
>gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens]
Length = 759
Score = 30.8 bits (68), Expect = 2.9
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 13 ADGGSPEEEEDGEREPLLPRIAWAHPRR-GAPGSAVRLLDAAGEEGEAGDEELPLP--PG 69
A S +E+ED E RIAW P G+ GSA+ + ++E+ P P
Sbjct: 510 AKASSQQEKEDKPAETKKLRIAWPPPTELGSSGSALEEGIKMSKPKWPPEDEISKPEVPE 569
Query: 70 DVGVS----RSSSAELDRSRPAVSVTIGTSEMNAFLDDPE 105
DV + R SS+ +RSRP T+ S + + P+
Sbjct: 570 DVDLDLKKLRRSSSLKERSRP---FTVAASFQSTSVKSPK 606
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,237,573
Number of Sequences: 37866
Number of extensions: 977799
Number of successful extensions: 3600
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 3379
Number of HSP's gapped (non-prelim): 263
length of query: 481
length of database: 18,247,518
effective HSP length: 106
effective length of query: 375
effective length of database: 14,233,722
effective search space: 5337645750
effective search space used: 5337645750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.