Guide to the Human Genome
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Name: LIMA1 Sequence: fasta or formatted (759aa) NCBI GI: 7705373
Description:

LIM domain and actin binding 1 isoform b

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [760aa] LIM domain and actin binding 1 isoform a
alt prot [600aa] LIM domain and actin binding 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         48           2
 C cysteine            1.1          8           1
 D aspartate           4.2         32           2
 E glutamate          11.9         90           2
 F phenylalanine       2.2         17           1
 G glycine             4.7         36           2
 H histidine           2.5         19           1
 I isoleucine          3.2         24           1
 K lysine              9.7         74           3
 L leucine             6.5         49           2
 M methionine          1.7         13           2
 N asparagine          5.3         40           2
 P proline             5.9         45           3
 Q glutamine           4.6         35           2
 R arginine            5.5         42           2
 S serine             12.5         95           3
 T threonine           4.5         34           2
 V valine              4.7         36           2
 W tryptophan          1.2          9           1
 Y tyrosine            1.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain and actin binding 1 isoform b 
LIMA1                 0.995   LIM domain and actin binding 1 isoform a 
LIMA1                 0.782   LIM domain and actin binding 1 isoform c 
XIRP2                 0.131   xin actin-binding repeat containing 2 isoform 2 [Ho...
LIMD2                 0.078   LIM domain containing 2 
MICAL3                0.031   microtubule associated monoxygenase, calponin and L...
MICAL3                0.027   microtubule associated monoxygenase, calponin and L...
MICAL3                0.027   microtubule associated monoxygenase, calponin and L...
MICAL2                0.027   microtubule associated monoxygenase, calponin and LIM...
MICALL2               0.023   MICAL-like 2 isoform 1 
CSRP3                 0.019   cysteine and glycine-rich protein 3 
CSRP3                 0.019   cysteine and glycine-rich protein 3 
CSRP1                 0.019   cysteine and glycine-rich protein 1 isoform 1 
MICALL1               0.019   molecule interacting with Rab13 
CSRP2                 0.019   cysteine and glycine-rich protein 2 
CRIP2                 0.018   cysteine-rich protein 2 
LIMS2                 0.017   LIM and senescent cell antigen-like domains 2 isofor...
CSRP1                 0.017   cysteine and glycine-rich protein 1 isoform 2 [Homo...
XIRP2                 0.017   xin actin-binding repeat containing 2 isoform 1 [Ho...
MICAL1                0.016   microtubule associated monoxygenase, calponin and L...
MICAL1                0.016   microtubule associated monoxygenase, calponin and L...
CRIP3                 0.016   cysteine-rich protein 3 
FBLIM1                0.015   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.015   filamin-binding LIM protein-1 isoform a 
LASP1                 0.015   LIM and SH3 protein 1 
NEBL                  0.015   nebulette non-muscle isoform 
LIMS2                 0.014   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.014   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.014   LIM and senescent cell antigen-like domains 2 isofo...
NRAP                  0.014   nebulin-related anchoring protein isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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