LIMA1 6814

Name: LIMA1	Sequence: fasta or formatted (760aa)		NCBI GI: 165905589
Description: LIM domain and actin binding 1 isoform a		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [600aa] LIM domain and actin binding 1 isoform c alt prot [759aa] LIM domain and actin binding 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.3 48 2 C cysteine 1.1 8 1 D aspartate 4.2 32 2 E glutamate 11.8 90 2 F phenylalanine 2.2 17 1 G glycine 4.9 37 2 H histidine 2.5 19 1 I isoleucine 3.2 24 1 K lysine 9.7 74 3 L leucine 6.4 49 2 M methionine 1.7 13 2 N asparagine 5.3 40 2 P proline 6.1 46 3 Q glutamine 4.6 35 2 R arginine 5.4 41 2 S serine 12.5 95 3 T threonine 4.5 34 2 V valine 4.7 36 2 W tryptophan 1.2 9 1 Y tyrosine 1.7 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM domain and actin binding 1 isoform a LIMA1 0.993 LIM domain and actin binding 1 isoform b LIMA1 0.787 LIM domain and actin binding 1 isoform c XIRP2 0.132 xin actin-binding repeat containing 2 isoform 2 [Ho... LIMD2 0.078 LIM domain containing 2 MICAL3 0.031 microtubule associated monoxygenase, calponin and L... MICAL3 0.027 microtubule associated monoxygenase, calponin and L... MICAL3 0.027 microtubule associated monoxygenase, calponin and L... MICAL2 0.027 microtubule associated monoxygenase, calponin and LIM... MICALL2 0.023 MICAL-like 2 isoform 1 CSRP3 0.019 cysteine and glycine-rich protein 3 CSRP3 0.019 cysteine and glycine-rich protein 3 CSRP1 0.019 cysteine and glycine-rich protein 1 isoform 1 MICALL1 0.019 molecule interacting with Rab13 CSRP2 0.019 cysteine and glycine-rich protein 2 CRIP2 0.018 cysteine-rich protein 2 FBLIM1 0.018 filamin-binding LIM protein-1 isoform b FBLIM1 0.018 filamin-binding LIM protein-1 isoform a LIMS2 0.017 LIM and senescent cell antigen-like domains 2 isofor... MICAL1 0.017 microtubule associated monoxygenase, calponin and L... MICAL1 0.017 microtubule associated monoxygenase, calponin and L... CSRP1 0.017 cysteine and glycine-rich protein 1 isoform 2 [Homo... CRIP3 0.016 cysteine-rich protein 3 LASP1 0.015 LIM and SH3 protein 1 NEBL 0.015 nebulette non-muscle isoform LOC100288695 0.015 PREDICTED: hypothetical protein XP_002342298 LIMS2 0.014 LIM and senescent cell antigen-like domains 2 isofo... LIMS2 0.014 LIM and senescent cell antigen-like domains 2 isofo... LIMS2 0.014 LIM and senescent cell antigen-like domains 2 isofo... NRAP 0.014 nebulin-related anchoring protein isoform C Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.